Wall clock time and date at job start Tue Mar 31 2020 14:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86809 * 119.99875 * 2 1 4 4 H 1.48506 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46915 * 300.00150 * 3 2 1 6 6 H 1.48497 * 109.46931 * 60.00355 * 3 2 1 7 7 C 1.37881 * 120.00333 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00026 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99705 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46788 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46939 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47021 * 180.02562 * 11 10 9 13 13 C 1.34771 * 119.99894 * 180.02562 * 12 11 10 14 14 O 1.21355 * 120.00283 * 359.97438 * 13 12 11 15 15 C 1.49454 * 120.00282 * 179.97438 * 13 12 11 16 16 O 1.21346 * 119.99241 * 0.02562 * 15 13 12 17 17 N 1.34771 * 120.00127 * 179.97438 * 15 13 12 18 18 C 1.46500 * 119.99683 * 180.02562 * 17 15 13 19 19 H 1.08995 * 109.54482 * 34.82404 * 18 17 15 20 20 C 1.53186 * 109.61676 * 274.59925 * 18 17 15 21 21 C 1.53087 * 109.16665 * 297.07435 * 20 18 17 22 22 O 1.42905 * 109.41504 * 302.39123 * 21 20 18 23 23 C 1.42905 * 114.09831 * 61.15479 * 22 21 20 24 24 H 1.08998 * 109.47767 * 58.82768 * 23 22 21 25 25 C 1.53005 * 109.47637 * 178.84865 * 23 22 21 26 26 C 1.52996 * 117.50287 * 8.75055 * 25 23 22 27 27 C 1.52999 * 117.50234 * 300.08659 * 25 23 22 28 28 C 1.53090 * 109.41466 * 298.84306 * 23 22 21 29 29 H 0.97004 * 120.00629 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.46892 * 60.00260 * 9 7 2 31 31 H 1.09004 * 109.47094 * 299.99992 * 9 7 2 32 32 H 1.09000 * 109.46977 * 60.00098 * 10 9 7 33 33 H 1.08995 * 109.46874 * 299.99807 * 10 9 7 34 34 H 1.09001 * 109.46893 * 59.99317 * 11 10 9 35 35 H 1.09004 * 109.46520 * 300.00140 * 11 10 9 36 36 H 0.96995 * 120.00224 * 359.97438 * 12 11 10 37 37 H 0.97001 * 119.99924 * 0.02562 * 17 15 13 38 38 H 1.09001 * 109.51857 * 56.97834 * 20 18 17 39 39 H 1.08995 * 109.52201 * 177.10325 * 20 18 17 40 40 H 1.08994 * 109.48330 * 182.40659 * 21 20 18 41 41 H 1.09001 * 109.48123 * 62.37055 * 21 20 18 42 42 H 1.09005 * 115.54329 * 154.41905 * 25 23 22 43 43 H 1.09002 * 117.49591 * 359.97438 * 26 25 23 44 44 H 1.08995 * 117.49995 * 145.01306 * 26 25 23 45 45 H 1.08992 * 117.49933 * 214.98176 * 27 25 23 46 46 H 1.08996 * 117.49678 * 0.02562 * 27 25 23 47 47 H 1.09007 * 109.51738 * 177.51413 * 28 23 22 48 48 H 1.08996 * 109.52412 * 297.70387 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4325 -6.1006 -0.0006 13 6 1.9833 -7.3712 -0.0015 14 8 0.7902 -7.5931 -0.0024 15 6 2.9544 -8.5072 -0.0014 16 8 4.1474 -8.2853 -0.0001 17 7 2.5052 -9.7778 -0.0019 18 6 3.4573 -10.8913 -0.0012 19 1 4.3347 -10.6205 0.5860 20 6 3.8805 -11.2069 -1.4393 21 6 2.6547 -11.6618 -2.2356 22 8 2.0692 -12.7988 -1.5980 23 6 1.6115 -12.5502 -0.2673 24 1 0.8693 -11.7522 -0.2813 25 6 0.9814 -13.8232 0.3016 26 6 1.1346 -15.1110 -0.5101 27 6 -0.2230 -14.4074 -0.4393 28 6 2.7954 -12.1311 0.6081 29 1 -0.4851 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8720 -3.6043 0.8895 33 1 2.8720 -3.6042 -0.8905 34 1 0.8540 -5.0445 -0.8913 35 1 0.8535 -5.0450 0.8886 36 1 3.3861 -5.9233 -0.0002 37 1 1.5515 -9.9551 -0.0026 38 1 4.3025 -10.3133 -1.8991 39 1 4.6273 -12.0008 -1.4332 40 1 2.9575 -11.9286 -3.2481 41 1 1.9261 -10.8521 -2.2753 42 1 0.9938 -13.9087 1.3882 43 1 1.6839 -15.0513 -1.4497 44 1 1.2474 -16.0437 0.0424 45 1 -1.0028 -14.8775 0.1597 46 1 -0.5662 -13.8851 -1.3323 47 1 2.4414 -11.8984 1.6125 48 1 3.5195 -12.9444 0.6554 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326453123.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:45 Heat of formation + Delta-G solvation = -131.628231 kcal Electronic energy + Delta-G solvation = -27105.804854 eV Core-core repulsion = 23159.983865 eV Total energy + Delta-G solvation = -3945.820990 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.02579 -40.83438 -39.53191 -37.63502 -37.17954 -36.18133 -35.21305 -33.06940 -32.67897 -31.95644 -29.02310 -27.01795 -25.86809 -24.79103 -24.27466 -23.18685 -22.38489 -21.74102 -21.61316 -20.49823 -19.60554 -18.51563 -17.95220 -17.52873 -17.23683 -17.03285 -16.80632 -16.54404 -16.28561 -16.21540 -16.12093 -15.39168 -15.30534 -14.98588 -14.60491 -14.29522 -13.96014 -13.83970 -13.77440 -13.52648 -13.40861 -12.95896 -12.86754 -12.79152 -12.55889 -12.43430 -12.37973 -12.25319 -11.99989 -11.71494 -11.62739 -11.56980 -11.24435 -11.22568 -10.97160 -10.73864 -10.56114 -10.52193 -10.32921 -10.21501 -8.20173 -6.31024 0.26453 1.23488 1.41363 1.42015 1.54905 2.06298 2.40873 2.56056 2.67064 2.97648 3.13872 3.34365 3.49591 3.67128 3.81725 3.92356 4.04643 4.06946 4.07742 4.16909 4.24321 4.30663 4.36195 4.51303 4.52879 4.66044 4.73528 4.79072 4.84825 4.87107 4.90427 4.91834 5.02710 5.03831 5.10496 5.13954 5.20442 5.24967 5.29154 5.40649 5.51142 5.69937 5.83513 5.83859 6.21715 6.23023 6.27459 6.64798 6.86047 6.86836 7.38463 8.91862 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.030768 B = 0.001821 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.831751 B =15369.098597 C =15829.607071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.024 3.976 10 C -0.106 4.106 11 C 0.127 3.873 12 N -0.685 5.685 13 C 0.499 3.501 14 O -0.548 6.548 15 C 0.518 3.482 16 O -0.535 6.535 17 N -0.687 5.687 18 C 0.139 3.861 19 H 0.096 0.904 20 C -0.162 4.162 21 C 0.061 3.939 22 O -0.383 6.383 23 C 0.114 3.886 24 H 0.056 0.944 25 C -0.157 4.157 26 C -0.163 4.163 27 C -0.181 4.181 28 C -0.144 4.144 29 H 0.263 0.737 30 H -0.004 1.004 31 H -0.003 1.003 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.419 0.581 37 H 0.414 0.586 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.042 0.958 42 H 0.131 0.869 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.411 -32.072 -0.210 32.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.014 4.014 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.338 5.338 13 C 0.280 3.720 14 O -0.427 6.427 15 C 0.298 3.702 16 O -0.411 6.411 17 N -0.341 5.341 18 C 0.035 3.965 19 H 0.114 0.886 20 C -0.200 4.200 21 C -0.016 4.016 22 O -0.302 6.302 23 C 0.056 3.944 24 H 0.073 0.927 25 C -0.175 4.175 26 C -0.200 4.200 27 C -0.218 4.218 28 C -0.182 4.182 29 H 0.072 0.928 30 H 0.015 0.985 31 H 0.015 0.985 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.257 0.743 37 H 0.252 0.748 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.060 0.940 42 H 0.149 0.851 43 H 0.112 0.888 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.103 0.897 47 H 0.113 0.887 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.265 -32.146 -0.295 32.752 hybrid contribution -0.058 1.569 0.002 1.570 sum 6.207 -30.577 -0.293 31.202 Atomic orbital electron populations 1.70098 1.07800 1.27722 1.51691 1.25982 0.95757 1.03411 0.94810 0.85392 0.79144 0.78802 0.77650 1.18446 1.20557 1.20533 1.21711 0.93724 0.92120 1.50418 0.91756 1.18944 0.94367 0.92613 0.95446 1.21641 0.98623 0.91871 1.02238 1.21480 0.91593 0.84540 1.01989 1.45880 1.12272 1.04656 1.70955 1.20384 0.88557 0.84868 0.78200 1.90756 1.17093 1.85054 1.49778 1.19912 0.87966 0.84644 0.77650 1.90761 1.16469 1.84929 1.48982 1.45942 1.12049 1.04200 1.71867 1.21297 0.92589 0.85044 0.97551 0.88595 1.22537 0.99401 1.02836 0.95251 1.22589 0.93596 0.88387 0.97004 1.87927 1.79012 1.35450 1.27816 1.21567 0.94293 0.96132 0.82418 0.92661 1.22388 1.02638 0.93418 0.99049 1.22867 0.99592 0.95264 1.02302 1.22991 0.91846 1.04338 1.02610 1.22434 0.99071 0.96618 1.00081 0.92792 0.98520 0.98507 0.91422 0.91456 0.91749 0.91716 0.74308 0.74778 0.91176 0.88272 0.87507 0.93955 0.85102 0.88781 0.87913 0.87801 0.89704 0.88724 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 3 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -30.07 9.11 25.60 0.23 -29.83 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.11 -4.02 5.27 30.60 0.16 -3.86 16 11 C 0.13 4.27 5.67 86.38 0.49 4.76 16 12 N -0.69 -19.51 5.55 -464.40 -2.58 -22.09 16 13 C 0.50 14.12 7.89 87.27 0.69 14.81 16 14 O -0.55 -17.95 16.48 -3.26 -0.05 -18.00 16 15 C 0.52 12.36 7.86 87.27 0.69 13.04 16 16 O -0.53 -14.44 16.14 -3.24 -0.05 -14.49 16 17 N -0.69 -12.26 4.40 -443.29 -1.95 -14.22 16 18 C 0.14 1.93 2.81 45.11 0.13 2.06 16 19 H 0.10 1.47 7.57 -2.39 -0.02 1.45 16 20 C -0.16 -2.16 5.81 30.69 0.18 -1.98 16 21 C 0.06 0.84 6.68 72.01 0.48 1.32 16 22 O -0.38 -5.75 8.76 -148.98 -1.31 -7.06 16 23 C 0.11 1.41 2.82 30.63 0.09 1.50 16 24 H 0.06 0.76 6.72 -2.39 -0.02 0.74 16 25 C -0.16 -1.72 5.71 -10.79 -0.06 -1.78 16 26 C -0.16 -1.87 9.88 30.62 0.30 -1.56 16 27 C -0.18 -2.16 10.19 30.62 0.31 -1.85 16 28 C -0.14 -1.44 5.06 30.68 0.16 -1.29 16 29 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 32 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.42 10.65 7.94 -92.71 -0.74 9.92 16 37 H 0.41 7.04 6.55 -92.71 -0.61 6.43 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.11 1.24 8.14 -2.39 -0.02 1.23 16 41 H 0.04 0.67 7.75 -2.39 -0.02 0.65 16 42 H 0.13 1.04 8.12 -2.38 -0.02 1.02 16 43 H 0.09 1.31 7.07 -2.39 -0.02 1.30 16 44 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 48 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -67.41 392.42 0.45 -66.96 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -0.38 Total: 22.10 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 4.45 Total: -2.93 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -4.24 Total: -92.33 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -1.41 Total: -39.55 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -67.41 0.45 -66.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326453123.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.668 kcal (2) G-P(sol) polarization free energy of solvation -67.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds