Wall clock time and date at job start Tue Mar 31 2020 14:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.82600 * 2 1 4 4 N 1.46497 * 109.47357 * 305.57084 * 3 2 1 5 5 C 1.34774 * 120.00182 * 179.97438 * 4 3 2 6 6 O 1.21344 * 119.99980 * 359.97438 * 5 4 3 7 7 C 1.49447 * 119.99991 * 179.97438 * 5 4 3 8 8 O 1.21353 * 119.99964 * 353.45391 * 7 5 4 9 9 N 1.34778 * 119.99744 * 173.17777 * 7 5 4 10 10 C 1.46919 * 120.63136 * 353.18888 * 9 7 5 11 11 C 1.53625 * 108.54138 * 126.37134 * 10 9 7 12 12 C 1.53043 * 109.24411 * 54.85975 * 11 10 9 13 13 C 1.50693 * 109.46182 * 178.49479 * 12 11 10 14 14 H 1.08000 * 120.00548 * 120.06428 * 13 12 11 15 15 C 1.37881 * 119.99918 * 300.06257 * 13 12 11 16 16 N 1.31518 * 119.99957 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99964 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46827 * 89.99549 * 17 15 13 19 19 H 1.48493 * 109.47285 * 210.00105 * 17 15 13 20 20 H 1.48499 * 109.46702 * 330.00139 * 17 15 13 21 21 C 1.53045 * 109.53398 * 298.51242 * 12 11 10 22 22 C 1.46928 * 120.62787 * 173.47546 * 9 7 5 23 23 C 1.54381 * 109.90576 * 120.93872 * 2 1 3 24 24 C 1.55312 * 102.25474 * 98.19523 * 23 2 1 25 25 C 1.54945 * 100.93992 * 34.13569 * 24 23 2 26 26 O 1.43239 * 109.82768 * 239.11304 * 2 1 3 27 27 H 1.09005 * 109.46939 * 59.29650 * 1 2 3 28 28 H 1.08996 * 109.47370 * 179.29724 * 1 2 3 29 29 H 1.08997 * 109.46797 * 299.29788 * 1 2 3 30 30 H 1.08996 * 109.46885 * 185.56781 * 3 2 1 31 31 H 1.09006 * 109.46891 * 65.56938 * 3 2 1 32 32 H 0.97007 * 119.99656 * 359.97438 * 4 3 2 33 33 H 1.08994 * 109.59129 * 246.20119 * 10 9 7 34 34 H 1.08998 * 109.58681 * 6.63507 * 10 9 7 35 35 H 1.09007 * 109.63553 * 294.86517 * 11 10 9 36 36 H 1.08998 * 109.43435 * 174.72723 * 11 10 9 37 37 H 1.08993 * 109.45031 * 58.52294 * 12 11 10 38 38 H 0.97001 * 119.99290 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.50028 * 301.41325 * 21 12 11 40 40 H 1.09000 * 109.49615 * 181.31841 * 21 12 11 41 41 H 1.09001 * 109.58754 * 353.36825 * 22 9 7 42 42 H 1.08999 * 109.58761 * 113.65591 * 22 9 7 43 43 H 1.09000 * 110.84750 * 216.38692 * 23 2 1 44 44 H 1.09005 * 110.84733 * 340.00731 * 23 2 1 45 45 H 1.08995 * 111.12317 * 276.21767 * 24 23 2 46 46 H 1.09004 * 111.15904 * 152.06578 * 24 23 2 47 47 H 1.08995 * 110.30962 * 204.64049 * 25 24 23 48 48 H 1.09000 * 110.31151 * 82.46879 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0489 1.4393 0.0000 4 7 1.4587 2.1712 -1.1234 5 6 1.7730 3.4664 -1.3234 6 8 2.5444 4.0265 -0.5727 7 6 1.1714 4.2129 -2.4699 8 8 0.4950 3.6254 -3.2884 9 7 1.3753 5.5396 -2.5915 10 6 2.0589 6.2922 -1.5309 11 6 3.2317 7.0624 -2.1565 12 6 2.7105 7.9288 -3.3055 13 6 3.8510 8.7147 -3.8990 14 1 4.1100 8.5884 -4.9399 15 6 4.5641 9.5951 -3.1132 16 7 5.5592 10.2814 -3.6314 17 14 4.1167 9.8132 -1.3127 18 1 4.8856 8.8444 -0.4909 19 1 4.4461 11.1965 -0.8849 20 1 2.6628 9.5719 -1.1313 21 6 2.0934 7.0334 -4.3824 22 6 0.9128 6.2618 -3.7845 23 6 2.0556 -0.7463 1.2450 24 6 2.3713 -2.1563 0.6754 25 6 2.8424 -1.7963 -0.7561 26 8 2.0159 -0.6917 -1.1564 27 1 -0.3633 0.5247 -0.8837 28 1 -0.3634 -1.0275 -0.0126 29 1 -0.3633 0.5029 0.8962 30 1 3.1343 1.4341 -0.0997 31 1 1.7723 1.9252 0.9357 32 1 0.8417 1.7235 -1.7234 33 1 1.3613 6.9929 -1.0722 34 1 2.4349 5.6010 -0.7766 35 1 3.9705 6.3578 -2.5384 36 1 3.6919 7.6989 -1.4008 37 1 1.9538 8.6161 -2.9274 38 1 6.0610 10.9005 -3.0784 39 1 2.8429 6.3290 -4.7433 40 1 1.7435 7.6492 -5.2109 41 1 0.5322 5.5505 -4.5175 42 1 0.1218 6.9583 -3.5062 43 1 2.9588 -0.2719 1.6291 44 1 1.2876 -0.8026 2.0165 45 1 1.4770 -2.7788 0.6498 46 1 3.1677 -2.6399 1.2411 47 1 2.6941 -2.6424 -1.4271 48 1 3.8913 -1.4998 -0.7460 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326570720.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:03 Heat of formation + Delta-G solvation = -121.418449 kcal Electronic energy + Delta-G solvation = -28537.405702 eV Core-core repulsion = 24592.027442 eV Total energy + Delta-G solvation = -3945.378260 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.12566 -40.94079 -39.76936 -38.74741 -36.40950 -35.25724 -33.50803 -33.36417 -32.27763 -32.08042 -28.86453 -28.11112 -26.92557 -25.50943 -24.26475 -23.61118 -22.66572 -21.71585 -21.24220 -20.45922 -18.95486 -18.76750 -18.15764 -17.46190 -17.18143 -16.97576 -16.70882 -16.50065 -16.24235 -15.88074 -15.48519 -15.16843 -15.06486 -14.92545 -14.56342 -14.42787 -14.12703 -13.99938 -13.75548 -13.64050 -13.47350 -13.44712 -13.02875 -12.88801 -12.64280 -12.53881 -12.22412 -12.12939 -12.01345 -11.93708 -11.76217 -11.62412 -11.52799 -11.27485 -11.04601 -10.70504 -10.57997 -10.40544 -10.07556 -9.74882 -8.29460 -6.33428 0.25802 1.24204 1.32949 1.36782 1.47815 2.05041 2.33370 2.39409 2.78852 3.06044 3.23152 3.44599 3.63341 3.82518 3.99487 4.02967 4.11776 4.14240 4.19464 4.25012 4.34803 4.42146 4.48825 4.55862 4.60899 4.67925 4.72799 4.76055 4.82377 4.85873 4.91943 4.92855 4.97435 5.01964 5.04667 5.06902 5.18987 5.27197 5.30837 5.35163 5.50030 5.66198 5.72107 5.94568 6.08715 6.20115 6.30546 6.63393 6.73308 6.86876 7.31912 8.87464 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.021579 B = 0.002793 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.251243 B =10020.978274 C =10559.923336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.092 3.908 3 C 0.111 3.889 4 N -0.678 5.678 5 C 0.510 3.490 6 O -0.525 6.525 7 C 0.503 3.497 8 O -0.547 6.547 9 N -0.571 5.571 10 C 0.054 3.946 11 C -0.125 4.125 12 C 0.011 3.989 13 C -0.519 4.519 14 H 0.031 0.969 15 C 0.008 3.992 16 N -0.952 5.952 17 Si 0.949 3.051 18 H -0.268 1.268 19 H -0.300 1.300 20 H -0.237 1.237 21 C -0.107 4.107 22 C 0.112 3.888 23 C -0.140 4.140 24 C -0.147 4.147 25 C 0.039 3.961 26 O -0.396 6.396 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.418 0.582 33 H 0.076 0.924 34 H 0.154 0.846 35 H 0.045 0.955 36 H 0.048 0.952 37 H 0.034 0.966 38 H 0.265 0.735 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.086 0.914 46 H 0.100 0.900 47 H 0.092 0.908 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.235 -26.555 14.011 32.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.052 3.948 3 C -0.012 4.012 4 N -0.330 5.330 5 C 0.292 3.708 6 O -0.404 6.404 7 C 0.286 3.714 8 O -0.426 6.426 9 N -0.302 5.302 10 C -0.067 4.067 11 C -0.163 4.163 12 C -0.008 4.008 13 C -0.557 4.557 14 H 0.049 0.951 15 C -0.188 4.188 16 N -0.593 5.593 17 Si 0.775 3.225 18 H -0.194 1.194 19 H -0.227 1.227 20 H -0.161 1.161 21 C -0.145 4.145 22 C -0.010 4.010 23 C -0.178 4.178 24 C -0.184 4.184 25 C -0.037 4.037 26 O -0.316 6.316 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.257 0.743 33 H 0.094 0.906 34 H 0.170 0.830 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.125 0.875 45 H 0.105 0.895 46 H 0.118 0.882 47 H 0.110 0.890 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.979 -26.308 13.920 32.084 hybrid contribution 0.557 0.608 -0.087 0.829 sum -11.422 -25.699 13.833 31.341 Atomic orbital electron populations 1.22108 0.92442 1.03605 1.03028 1.22452 0.95447 0.89845 0.87044 1.22102 0.98492 0.91398 0.89233 1.45774 1.46616 1.09400 1.31249 1.20092 0.82107 0.83654 0.84965 1.90342 1.36312 1.66163 1.47581 1.20151 0.81642 0.82979 0.86650 1.90707 1.39535 1.68036 1.44372 1.48114 1.54847 1.06463 1.20797 1.23372 0.94323 0.98066 0.90956 1.22214 0.97450 0.98250 0.98386 1.19159 0.94908 0.93480 0.93285 1.21373 1.15120 1.22363 0.96817 0.95108 1.25946 0.94448 0.94954 1.03492 1.70065 1.22454 1.28238 1.38509 0.85840 0.80934 0.75936 0.79782 1.19379 1.22744 1.16087 1.21720 0.96461 0.97767 0.98556 1.21891 0.96690 0.95827 0.86556 1.23172 1.03163 0.95061 0.96405 1.23246 1.03211 0.96983 0.95007 1.23587 0.94436 0.88908 0.96809 1.88478 1.67536 1.44753 1.30853 0.92849 0.90666 0.89576 0.91376 0.88426 0.74338 0.90596 0.83009 0.93567 0.93346 0.94779 0.92628 0.93914 0.90639 0.88768 0.89202 0.89579 0.87540 0.89496 0.88179 0.88966 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.51 71.98 0.61 -1.09 16 2 C 0.09 1.20 0.93 -10.33 -0.01 1.20 16 3 C 0.11 1.92 4.73 86.38 0.41 2.32 16 4 N -0.68 -15.16 5.21 -464.43 -2.42 -17.57 16 5 C 0.51 14.72 7.78 87.27 0.68 15.40 16 6 O -0.52 -16.89 13.10 -3.23 -0.04 -16.93 16 7 C 0.50 16.29 7.74 87.27 0.68 16.97 16 8 O -0.55 -18.79 15.94 -3.26 -0.05 -18.84 16 9 N -0.57 -19.29 2.97 -819.66 -2.43 -21.72 16 10 C 0.05 1.87 6.30 86.51 0.54 2.42 16 11 C -0.12 -5.37 4.86 30.82 0.15 -5.22 16 12 C 0.01 0.49 1.65 -11.51 -0.02 0.47 16 13 C -0.52 -29.96 9.14 25.60 0.23 -29.73 16 14 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 15 C 0.01 0.48 5.45 84.65 0.46 0.94 16 16 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 17 Si 0.95 45.13 24.38 68.60 1.67 46.81 16 18 H -0.27 -12.26 6.86 99.48 0.68 -11.58 16 19 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 20 H -0.24 -10.17 6.53 99.48 0.65 -9.52 16 21 C -0.11 -4.23 5.30 30.67 0.16 -4.06 16 22 C 0.11 3.65 6.41 86.36 0.55 4.20 16 23 C -0.14 -1.08 6.09 31.86 0.19 -0.89 16 24 C -0.15 -1.00 7.16 32.05 0.23 -0.77 16 25 C 0.04 0.46 7.78 72.65 0.56 1.02 16 26 O -0.40 -7.02 10.65 -148.98 -1.59 -8.61 16 27 H 0.05 0.73 6.55 -2.38 -0.02 0.71 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.42 9.02 6.46 -92.70 -0.60 8.42 16 33 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.15 5.26 3.78 -78.78 -0.30 4.96 16 35 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.05 2.16 3.24 -2.39 -0.01 2.15 16 37 H 0.03 1.54 7.20 -2.39 -0.02 1.53 16 38 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 39 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 41 H 0.09 2.94 7.05 -2.39 -0.02 2.92 16 42 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.09 0.64 7.85 -2.39 -0.02 0.62 16 44 H 0.11 0.46 7.83 -2.38 -0.02 0.44 16 45 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 47 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -72.54 368.63 0.88 -71.66 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.00 Total: 22.39 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 5.44 Total: 3.18 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -4.55 Total: -99.65 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -1.68 Total: -44.38 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.67 Total: 46.81 kcal Total: -72.54 0.88 -71.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326570720.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.757 kcal (2) G-P(sol) polarization free energy of solvation -72.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds