Wall clock time and date at job start Tue Mar 31 2020 13:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00023 * 2 1 4 4 H 1.48497 * 109.46853 * 239.99754 * 3 2 1 5 5 H 1.48497 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47134 * 119.99641 * 3 2 1 7 7 C 1.37872 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99695 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00399 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.49685 * 59.93614 * 9 7 2 11 11 C 1.53040 * 109.50079 * 180.02562 * 9 7 2 12 12 C 1.53043 * 109.53799 * 181.31714 * 11 9 7 13 13 C 1.53186 * 109.31137 * 298.63089 * 12 11 9 14 14 N 1.46922 * 108.77690 * 54.63688 * 13 12 11 15 15 C 1.34778 * 120.63288 * 126.36464 * 14 13 12 16 16 O 1.21350 * 120.00074 * 185.15449 * 15 14 13 17 17 C 1.49449 * 119.99833 * 5.15579 * 15 14 13 18 18 O 1.21352 * 119.99745 * 274.87299 * 17 15 14 19 19 N 1.34772 * 120.00187 * 94.60007 * 17 15 14 20 20 C 1.46926 * 120.63008 * 4.84100 * 19 17 15 21 21 C 1.52761 * 109.00819 * 233.58359 * 20 19 17 22 22 C 1.53041 * 109.38176 * 305.58370 * 21 20 19 23 23 C 1.53006 * 109.45770 * 181.25917 * 22 21 20 24 24 O 1.42906 * 109.46909 * 64.93696 * 23 22 21 25 25 C 1.53041 * 109.53332 * 61.24549 * 22 21 20 26 26 C 1.46923 * 120.63531 * 185.11880 * 19 17 15 27 27 C 1.46930 * 118.73980 * 306.64382 * 14 13 12 28 28 H 0.96999 * 120.00156 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46054 * 61.29533 * 11 9 7 30 30 H 1.09003 * 109.44653 * 301.32876 * 11 9 7 31 31 H 1.09004 * 109.49517 * 178.67519 * 12 11 9 32 32 H 1.09003 * 109.49696 * 58.58696 * 12 11 9 33 33 H 1.08996 * 109.58819 * 294.84448 * 13 12 11 34 34 H 1.09001 * 109.70133 * 174.49179 * 13 12 11 35 35 H 1.09005 * 109.58935 * 353.41971 * 20 19 17 36 36 H 1.09002 * 109.58867 * 113.83862 * 20 19 17 37 37 H 1.09007 * 109.55930 * 185.55074 * 21 20 19 38 38 H 1.08998 * 109.38678 * 65.51408 * 21 20 19 39 39 H 1.08996 * 109.45337 * 301.22526 * 22 21 20 40 40 H 1.08999 * 109.46641 * 184.93278 * 23 22 21 41 41 H 1.09000 * 109.47308 * 304.94065 * 23 22 21 42 42 H 0.96699 * 113.99608 * 179.97438 * 24 23 22 43 43 H 1.09009 * 109.49305 * 178.67963 * 25 22 21 44 44 H 1.08992 * 109.50359 * 58.58216 * 25 22 21 45 45 H 1.09001 * 109.58692 * 246.16339 * 26 19 17 46 46 H 1.09003 * 109.58707 * 6.58048 * 26 19 17 47 47 H 1.08999 * 109.58814 * 173.14425 * 27 14 13 48 48 H 1.09001 * 109.58250 * 293.56714 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6237 -2.5571 -0.8889 11 6 2.2450 -3.6628 0.0018 12 6 1.4810 -4.9885 -0.0313 13 6 0.6049 -5.0997 1.2203 14 7 -0.2537 -3.9105 1.3037 15 6 -1.5903 -4.0355 1.4244 16 8 -2.2968 -3.0492 1.3983 17 6 -2.2022 -5.3888 1.5903 18 8 -2.4551 -6.0642 0.6143 19 7 -2.4682 -5.8614 2.8241 20 6 -2.2611 -5.0183 4.0094 21 6 -1.3675 -5.7629 4.9997 22 6 -1.9764 -7.1340 5.3019 23 6 -1.0992 -7.8687 6.3176 24 8 -1.1167 -7.1634 7.5603 25 6 -2.0580 -7.9532 4.0118 26 6 -2.9649 -7.2316 3.0100 27 6 0.3717 -2.5821 1.2469 28 1 -0.4850 0.8400 -0.0004 29 1 2.8555 -3.6180 0.9037 30 1 2.8877 -3.5921 -0.8757 31 1 2.1898 -5.8164 -0.0541 32 1 0.8515 -5.0235 -0.9205 33 1 1.2380 -5.1562 2.1057 34 1 -0.0149 -5.9941 1.1567 35 1 -1.7800 -4.0856 3.7149 36 1 -3.2218 -4.8042 4.4779 37 1 -1.2880 -5.1886 5.9228 38 1 -0.3761 -5.8927 4.5655 39 1 -2.9773 -7.0039 5.7134 40 1 -1.4835 -8.8776 6.4669 41 1 -0.0765 -7.9209 5.9439 42 1 -0.5807 -7.5736 8.2529 43 1 -2.4701 -8.9381 4.2318 44 1 -1.0605 -8.0625 3.5864 45 1 -3.9841 -7.2017 3.3952 46 1 -2.9480 -7.7590 2.0561 47 1 -0.4019 -1.8158 1.1984 48 1 0.9855 -2.4291 2.1346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327258180.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:28 Heat of formation + Delta-G solvation = -128.455687 kcal Electronic energy + Delta-G solvation = -29371.165973 eV Core-core repulsion = 25425.482555 eV Total energy + Delta-G solvation = -3945.683418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.76387 -39.06191 -37.97126 -36.74958 -36.53267 -33.45316 -33.33032 -31.86326 -31.39970 -29.89671 -27.92569 -25.86832 -25.06835 -23.71293 -23.56164 -22.02662 -21.82154 -20.50180 -19.43097 -18.38333 -17.67865 -17.47073 -16.63483 -16.20139 -16.01619 -15.47072 -14.99203 -14.80446 -14.66449 -14.56649 -14.22962 -13.80123 -13.74909 -13.68520 -13.24252 -13.00912 -12.88689 -12.66722 -12.65349 -12.46678 -12.18470 -11.95721 -11.51915 -11.15518 -11.04602 -11.03165 -10.92740 -10.83740 -10.81182 -10.54892 -10.41549 -10.27659 -10.26626 -9.95193 -9.25866 -9.16022 -8.88643 -8.82940 -8.46836 -7.91471 -6.01503 -4.11024 2.35798 2.51249 3.01872 3.31318 3.37462 3.38507 3.71251 3.81779 4.37294 4.38750 4.42202 4.57129 4.76447 4.82457 5.00227 5.04142 5.10304 5.20365 5.25347 5.28736 5.29478 5.45165 5.51643 5.59652 5.60114 5.62425 5.66678 5.72787 5.89413 5.92405 6.09291 6.14874 6.27593 6.33896 6.54881 6.61404 6.79247 6.93152 7.00753 7.11346 7.14016 7.27601 7.56902 7.81886 7.90751 7.94113 8.06348 8.32173 8.51224 8.92968 9.54887 11.03740 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.003440 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.527769 B = 8136.498482 C = 8474.975813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.039 3.961 10 H 0.031 0.969 11 C -0.110 4.110 12 C -0.133 4.133 13 C 0.109 3.891 14 N -0.586 5.586 15 C 0.506 3.494 16 O -0.510 6.510 17 C 0.520 3.480 18 O -0.521 6.521 19 N -0.601 5.601 20 C 0.106 3.894 21 C -0.125 4.125 22 C -0.088 4.088 23 C 0.081 3.919 24 O -0.572 6.572 25 C -0.127 4.127 26 C 0.112 3.888 27 C 0.111 3.889 28 H 0.265 0.735 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.047 0.953 42 H 0.379 0.621 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.096 0.904 47 H 0.125 0.875 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.548 -18.153 13.426 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.019 3.981 10 H 0.049 0.951 11 C -0.148 4.148 12 C -0.171 4.171 13 C -0.015 4.015 14 N -0.320 5.320 15 C 0.287 3.713 16 O -0.385 6.385 17 C 0.303 3.697 18 O -0.395 6.395 19 N -0.337 5.337 20 C -0.017 4.017 21 C -0.163 4.163 22 C -0.107 4.107 23 C 0.003 3.997 24 O -0.378 6.378 25 C -0.166 4.166 26 C -0.010 4.010 27 C -0.009 4.009 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.225 0.775 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.114 0.886 47 H 0.143 0.857 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.626 -17.429 12.521 21.621 hybrid contribution 0.848 0.419 0.318 0.998 sum -1.778 -17.010 12.839 21.385 Atomic orbital electron populations 1.69868 1.05748 1.27064 1.49072 1.25061 0.94886 0.99296 0.94767 0.86632 0.79554 0.83088 0.78585 1.20275 1.21242 1.20228 1.21022 0.92893 0.89983 1.52138 0.92298 1.18905 0.92669 0.92463 0.94020 0.95110 1.21632 0.98523 0.93881 1.00732 1.21932 0.98555 0.99235 0.97395 1.21681 0.93573 0.87223 0.98982 1.48580 1.04298 1.09813 1.69300 1.19959 0.83661 0.88583 0.79079 1.90837 1.60331 1.37358 1.49976 1.20803 0.78528 0.87100 0.83228 1.90750 1.52792 1.57788 1.38201 1.48133 1.65355 1.14312 1.05890 1.21745 1.00556 0.93918 0.85447 1.21845 0.99093 0.95806 0.99550 1.21154 1.00140 0.95404 0.94002 1.22213 0.98910 0.94152 0.84387 1.86486 1.73824 1.54819 1.22622 1.21913 1.01199 0.98700 0.94752 1.21609 0.97030 0.81719 1.00653 1.22380 0.98862 0.80465 0.99153 0.92498 0.93083 0.92774 0.91982 0.91801 0.91598 0.91470 0.89258 0.90660 0.89527 0.91315 0.90093 0.93683 0.93511 0.77457 0.90311 0.91001 0.91091 0.88574 0.85713 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.46 11.39 55.43 0.63 -24.83 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -13.93 8.56 -34.44 -0.29 -14.22 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.04 0.95 2.24 -91.87 -0.21 0.74 16 10 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 11 C -0.11 -2.17 5.11 -26.69 -0.14 -2.30 16 12 C -0.13 -2.23 6.08 -26.61 -0.16 -2.39 16 13 C 0.11 1.78 6.33 -3.72 -0.02 1.75 16 14 N -0.59 -11.85 2.98 -173.54 -0.52 -12.36 16 15 C 0.51 10.67 5.48 -11.58 -0.06 10.60 16 16 O -0.51 -12.70 16.50 5.50 0.09 -12.61 16 17 C 0.52 9.36 5.61 -11.59 -0.07 9.30 16 18 O -0.52 -10.48 16.32 5.49 0.09 -10.39 16 19 N -0.60 -8.17 2.98 -173.54 -0.52 -8.68 16 20 C 0.11 1.29 6.33 -3.93 -0.02 1.26 16 21 C -0.12 -1.22 5.25 -26.83 -0.14 -1.36 16 22 C -0.09 -0.71 2.39 -90.57 -0.22 -0.93 16 23 C 0.08 0.55 6.43 37.16 0.24 0.79 16 24 O -0.57 -4.40 13.17 -35.23 -0.46 -4.87 16 25 C -0.13 -0.97 5.36 -26.61 -0.14 -1.11 16 26 C 0.11 1.15 6.42 -3.71 -0.02 1.13 16 27 C 0.11 2.62 5.39 -3.93 -0.02 2.59 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.03 6.22 -51.93 -0.32 0.71 16 35 H 0.09 1.30 6.30 -51.93 -0.33 0.97 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.86 7.79 -51.93 -0.40 0.46 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.38 1.28 9.12 45.56 0.42 1.69 16 43 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.10 1.08 7.03 -51.93 -0.37 0.72 16 47 H 0.13 3.45 5.10 -51.93 -0.27 3.19 16 48 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 376.21 15.07 5.67 5.67 Total: -1.00 -33.50 376.21 -8.57 -42.06 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.15 Total: 2.54 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -1.38 Total: 7.47 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.40 Total: -45.88 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.28 Total: -27.86 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.50 -8.57 -42.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327258180.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.393 kcal (2) G-P(sol) polarization free energy of solvation -33.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds