Wall clock time and date at job start Tue Mar 31 2020 13:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00023 * 2 1 4 4 H 1.48497 * 109.46853 * 239.99754 * 3 2 1 5 5 H 1.48497 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47134 * 119.99641 * 3 2 1 7 7 C 1.37872 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99695 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00399 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.49685 * 59.93614 * 9 7 2 11 11 C 1.53040 * 109.50079 * 180.02562 * 9 7 2 12 12 C 1.53043 * 109.53799 * 181.31714 * 11 9 7 13 13 C 1.53186 * 109.31137 * 298.63089 * 12 11 9 14 14 N 1.46922 * 108.77690 * 54.63688 * 13 12 11 15 15 C 1.34778 * 120.63288 * 126.36464 * 14 13 12 16 16 O 1.21350 * 120.00074 * 185.15449 * 15 14 13 17 17 C 1.49449 * 119.99833 * 5.15579 * 15 14 13 18 18 O 1.21352 * 119.99745 * 274.87299 * 17 15 14 19 19 N 1.34772 * 120.00187 * 94.60007 * 17 15 14 20 20 C 1.46926 * 120.63008 * 4.84100 * 19 17 15 21 21 C 1.52761 * 109.00819 * 233.58359 * 20 19 17 22 22 C 1.53041 * 109.38176 * 305.58370 * 21 20 19 23 23 C 1.53006 * 109.45770 * 181.25917 * 22 21 20 24 24 O 1.42906 * 109.46909 * 64.93696 * 23 22 21 25 25 C 1.53041 * 109.53332 * 61.24549 * 22 21 20 26 26 C 1.46923 * 120.63531 * 185.11880 * 19 17 15 27 27 C 1.46930 * 118.73980 * 306.64382 * 14 13 12 28 28 H 0.96999 * 120.00156 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46054 * 61.29533 * 11 9 7 30 30 H 1.09003 * 109.44653 * 301.32876 * 11 9 7 31 31 H 1.09004 * 109.49517 * 178.67519 * 12 11 9 32 32 H 1.09003 * 109.49696 * 58.58696 * 12 11 9 33 33 H 1.08996 * 109.58819 * 294.84448 * 13 12 11 34 34 H 1.09001 * 109.70133 * 174.49179 * 13 12 11 35 35 H 1.09005 * 109.58935 * 353.41971 * 20 19 17 36 36 H 1.09002 * 109.58867 * 113.83862 * 20 19 17 37 37 H 1.09007 * 109.55930 * 185.55074 * 21 20 19 38 38 H 1.08998 * 109.38678 * 65.51408 * 21 20 19 39 39 H 1.08996 * 109.45337 * 301.22526 * 22 21 20 40 40 H 1.08999 * 109.46641 * 184.93278 * 23 22 21 41 41 H 1.09000 * 109.47308 * 304.94065 * 23 22 21 42 42 H 0.96699 * 113.99608 * 179.97438 * 24 23 22 43 43 H 1.09009 * 109.49305 * 178.67963 * 25 22 21 44 44 H 1.08992 * 109.50359 * 58.58216 * 25 22 21 45 45 H 1.09001 * 109.58692 * 246.16339 * 26 19 17 46 46 H 1.09003 * 109.58707 * 6.58048 * 26 19 17 47 47 H 1.08999 * 109.58814 * 173.14425 * 27 14 13 48 48 H 1.09001 * 109.58250 * 293.56714 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6237 -2.5571 -0.8889 11 6 2.2450 -3.6628 0.0018 12 6 1.4810 -4.9885 -0.0313 13 6 0.6049 -5.0997 1.2203 14 7 -0.2537 -3.9105 1.3037 15 6 -1.5903 -4.0355 1.4244 16 8 -2.2968 -3.0492 1.3983 17 6 -2.2022 -5.3888 1.5903 18 8 -2.4551 -6.0642 0.6143 19 7 -2.4682 -5.8614 2.8241 20 6 -2.2611 -5.0183 4.0094 21 6 -1.3675 -5.7629 4.9997 22 6 -1.9764 -7.1340 5.3019 23 6 -1.0992 -7.8687 6.3176 24 8 -1.1167 -7.1634 7.5603 25 6 -2.0580 -7.9532 4.0118 26 6 -2.9649 -7.2316 3.0100 27 6 0.3717 -2.5821 1.2469 28 1 -0.4850 0.8400 -0.0004 29 1 2.8555 -3.6180 0.9037 30 1 2.8877 -3.5921 -0.8757 31 1 2.1898 -5.8164 -0.0541 32 1 0.8515 -5.0235 -0.9205 33 1 1.2380 -5.1562 2.1057 34 1 -0.0149 -5.9941 1.1567 35 1 -1.7800 -4.0856 3.7149 36 1 -3.2218 -4.8042 4.4779 37 1 -1.2880 -5.1886 5.9228 38 1 -0.3761 -5.8927 4.5655 39 1 -2.9773 -7.0039 5.7134 40 1 -1.4835 -8.8776 6.4669 41 1 -0.0765 -7.9209 5.9439 42 1 -0.5807 -7.5736 8.2529 43 1 -2.4701 -8.9381 4.2318 44 1 -1.0605 -8.0625 3.5864 45 1 -3.9841 -7.2017 3.3952 46 1 -2.9480 -7.7590 2.0561 47 1 -0.4019 -1.8158 1.1984 48 1 0.9855 -2.4291 2.1346 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327258180.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:28 Heat of formation + Delta-G solvation = -153.181392 kcal Electronic energy + Delta-G solvation = -29372.238160 eV Core-core repulsion = 25425.482555 eV Total energy + Delta-G solvation = -3946.755605 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.15947 -40.35160 -39.09228 -38.45275 -37.30080 -35.35548 -34.26895 -33.57252 -32.26138 -31.68594 -28.91568 -27.43090 -26.80587 -24.91719 -24.45333 -23.56958 -23.04902 -21.55510 -20.81420 -19.76519 -19.02552 -18.27905 -18.13290 -17.98323 -17.51156 -16.57773 -16.19177 -16.03013 -15.96231 -15.72475 -15.40226 -15.31873 -15.10074 -14.74292 -14.54704 -14.42786 -14.32192 -13.98643 -13.89577 -13.61115 -13.48238 -13.19055 -12.85598 -12.77869 -12.61468 -12.33169 -12.27948 -12.24040 -11.88934 -11.78789 -11.69879 -11.59133 -11.54031 -11.12789 -10.99106 -10.76464 -10.59699 -10.51670 -9.95190 -9.63987 -8.10968 -6.28913 0.92446 1.07013 1.42422 1.43125 1.48341 1.52711 2.30202 2.43252 3.07086 3.17797 3.33670 3.64831 3.76613 3.89042 3.98386 4.05680 4.15867 4.22116 4.23575 4.31004 4.48573 4.51452 4.57077 4.64481 4.67882 4.70227 4.73796 4.76314 4.81685 4.90481 4.95562 5.02690 5.02868 5.12566 5.15430 5.20942 5.27558 5.38342 5.40908 5.42516 5.57541 5.85115 5.89053 5.94863 6.26615 6.31542 6.59583 6.79613 6.87613 6.99384 7.41828 8.92515 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.003440 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.527769 B = 8136.498482 C = 8474.975813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.010 3.990 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.263 1.263 7 C -0.534 4.534 8 H 0.067 0.933 9 C 0.035 3.965 10 H -0.019 1.019 11 C -0.102 4.102 12 C -0.127 4.127 13 C 0.106 3.894 14 N -0.585 5.585 15 C 0.498 3.502 16 O -0.563 6.563 17 C 0.526 3.474 18 O -0.548 6.548 19 N -0.584 5.584 20 C 0.103 3.897 21 C -0.116 4.116 22 C -0.087 4.087 23 C 0.083 3.917 24 O -0.595 6.595 25 C -0.117 4.117 26 C 0.104 3.896 27 C 0.124 3.876 28 H 0.260 0.740 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.109 0.891 32 H 0.041 0.959 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.396 0.604 43 H 0.110 0.890 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 -20.941 15.467 26.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.189 4.189 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.573 4.573 8 H 0.085 0.915 9 C 0.016 3.984 10 H -0.001 1.001 11 C -0.140 4.140 12 C -0.165 4.165 13 C -0.016 4.016 14 N -0.317 5.317 15 C 0.281 3.719 16 O -0.442 6.442 17 C 0.309 3.691 18 O -0.426 6.426 19 N -0.318 5.318 20 C -0.020 4.020 21 C -0.154 4.154 22 C -0.105 4.105 23 C 0.005 3.995 24 O -0.403 6.403 25 C -0.154 4.154 26 C -0.016 4.016 27 C 0.003 3.997 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.127 0.873 32 H 0.060 0.940 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.246 0.754 43 H 0.128 0.872 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.098 0.902 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.913 -20.284 14.617 25.019 hybrid contribution 0.303 1.269 -0.271 1.333 sum -0.610 -19.015 14.346 23.828 Atomic orbital electron populations 1.70082 1.07537 1.27431 1.50496 1.25917 0.95516 1.03028 0.94485 0.85581 0.78204 0.78553 0.79159 1.19528 1.21665 1.18786 1.21457 0.93416 0.91098 1.51312 0.91512 1.18864 0.93165 0.94240 0.92154 1.00099 1.21511 0.97565 0.93312 1.01613 1.21907 0.98849 0.99105 0.96598 1.21997 0.93524 0.85800 1.00256 1.48589 1.04736 1.09969 1.68439 1.20656 0.83654 0.89646 0.77976 1.90794 1.61573 1.39569 1.52262 1.20104 0.79008 0.85483 0.84516 1.90737 1.54572 1.57958 1.39293 1.48207 1.63338 1.15723 1.04558 1.21871 1.01667 0.93078 0.85349 1.21772 0.98425 0.96821 0.98362 1.21147 1.00354 0.94264 0.94752 1.22199 0.98931 0.94585 0.83740 1.86435 1.74561 1.55819 1.23502 1.21868 1.00713 0.99493 0.93370 1.21973 0.98724 0.79464 1.01442 1.21847 0.97440 0.81451 0.98952 0.93081 0.91351 0.92637 0.87280 0.93996 0.88272 0.90035 0.92198 0.89424 0.89637 0.91437 0.90108 0.91681 0.92968 0.75420 0.87207 0.90891 0.89314 0.89334 0.90179 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.89 11.39 21.45 0.24 -55.65 16 2 C 0.01 0.56 5.30 84.65 0.45 1.01 16 3 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.53 -29.09 8.56 25.60 0.22 -28.87 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 9 C 0.03 1.77 2.24 -11.61 -0.03 1.75 16 10 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 11 C -0.10 -3.93 5.11 30.62 0.16 -3.77 16 12 C -0.13 -4.01 6.08 30.67 0.19 -3.82 16 13 C 0.11 3.26 6.33 86.36 0.55 3.81 16 14 N -0.58 -24.24 2.98 -821.32 -2.45 -26.68 16 15 C 0.50 21.96 5.48 87.27 0.48 22.44 16 16 O -0.56 -30.13 16.50 -3.25 -0.05 -30.18 16 17 C 0.53 19.15 5.61 87.27 0.49 19.64 16 18 O -0.55 -22.22 16.32 -3.25 -0.05 -22.28 16 19 N -0.58 -15.35 2.98 -821.32 -2.45 -17.80 16 20 C 0.10 2.44 6.33 86.22 0.55 2.98 16 21 C -0.12 -2.04 5.25 30.53 0.16 -1.88 16 22 C -0.09 -1.10 2.39 -10.76 -0.03 -1.13 16 23 C 0.08 0.81 6.43 71.98 0.46 1.27 16 24 O -0.59 -7.39 13.17 -148.98 -1.96 -9.35 16 25 C -0.12 -1.33 5.36 30.67 0.16 -1.16 16 26 C 0.10 1.90 6.42 86.36 0.55 2.45 16 27 C 0.12 6.12 5.39 86.22 0.46 6.59 16 28 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.11 2.51 8.14 -2.38 -0.02 2.49 16 32 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 2.45 8.14 -2.39 -0.02 2.44 16 34 H 0.08 2.34 6.22 -2.39 -0.01 2.32 16 35 H 0.06 1.81 6.30 -2.38 -0.02 1.79 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.09 1.56 7.79 -2.38 -0.02 1.54 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.40 1.54 9.12 -74.06 -0.68 0.86 16 43 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.09 1.82 7.03 -2.39 -0.02 1.80 16 47 H 0.08 4.75 5.10 -2.39 -0.01 4.73 16 48 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -78.58 376.21 0.42 -78.16 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.28 Total: 16.57 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: 4.83 Total: 21.31 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -4.65 Total: -100.13 kcal Atomic # 8 Polarization: -59.74 SS G_CDS: -2.07 Total: -61.81 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -78.58 0.42 -78.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327258180.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.018 kcal (2) G-P(sol) polarization free energy of solvation -78.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds