Wall clock time and date at job start Tue Mar 31 2020 14:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42896 * 109.49447 * 2 1 4 4 C 1.53042 * 109.49466 * 120.06606 * 2 1 3 5 5 C 1.53040 * 109.53549 * 181.35323 * 4 2 1 6 6 C 1.53191 * 109.30946 * 298.63024 * 5 4 2 7 7 N 1.46927 * 108.89407 * 54.56578 * 6 5 4 8 8 C 1.34779 * 120.63256 * 126.46766 * 7 6 5 9 9 O 1.21348 * 119.99756 * 355.81464 * 8 7 6 10 10 C 1.49444 * 120.00172 * 175.82423 * 8 7 6 11 11 O 1.21347 * 120.00718 * 84.22895 * 10 8 7 12 12 N 1.34780 * 119.99548 * 264.22749 * 10 8 7 13 13 C 1.46925 * 120.63105 * 4.76854 * 12 10 8 14 14 C 1.53194 * 108.77309 * 233.58262 * 13 12 10 15 15 C 1.53042 * 109.31605 * 305.36648 * 14 13 12 16 16 C 1.53040 * 109.53757 * 61.36300 * 15 14 13 17 17 H 1.08995 * 109.49735 * 58.62170 * 16 15 14 18 18 C 1.50703 * 109.49686 * 178.68657 * 16 15 14 19 19 H 1.07999 * 119.99768 * 359.08427 * 18 16 15 20 20 C 1.37876 * 119.99886 * 179.08231 * 18 16 15 21 21 N 1.31508 * 120.00147 * 6.83240 * 20 18 16 22 22 Si 1.86797 * 119.99928 * 186.82288 * 20 18 16 23 23 H 1.48501 * 109.46955 * 94.99732 * 22 20 18 24 24 H 1.48498 * 109.47413 * 215.00046 * 22 20 18 25 25 H 1.48508 * 109.47344 * 335.00265 * 22 20 18 26 26 C 1.46933 * 120.62980 * 184.48692 * 12 10 8 27 27 C 1.46963 * 118.71752 * 306.64308 * 7 6 5 28 28 H 1.08998 * 109.47083 * 299.93811 * 1 2 3 29 29 H 1.08996 * 109.46810 * 59.93525 * 1 2 3 30 30 H 1.08997 * 109.46696 * 179.97438 * 1 2 3 31 31 H 0.96697 * 114.00086 * 300.06144 * 3 2 1 32 32 H 1.08989 * 109.46314 * 61.32715 * 4 2 1 33 33 H 1.09007 * 109.46067 * 301.36790 * 4 2 1 34 34 H 1.09003 * 109.49947 * 178.68235 * 5 4 2 35 35 H 1.08997 * 109.52823 * 58.59522 * 5 4 2 36 36 H 1.09006 * 109.58779 * 174.42025 * 6 5 4 37 37 H 1.08994 * 109.59131 * 294.70853 * 6 5 4 38 38 H 1.08995 * 109.58659 * 353.36714 * 13 12 10 39 39 H 1.08999 * 109.58814 * 113.65887 * 13 12 10 40 40 H 1.09004 * 109.49496 * 65.31634 * 14 13 12 41 41 H 1.08999 * 109.49754 * 185.37984 * 14 13 12 42 42 H 1.08998 * 109.46080 * 181.38873 * 15 14 13 43 43 H 1.09000 * 109.45873 * 301.34372 * 15 14 13 44 44 H 0.97006 * 120.00239 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.58010 * 246.20579 * 26 12 10 46 46 H 1.08998 * 109.58578 * 6.62590 * 26 12 10 47 47 H 1.09006 * 109.46112 * 293.57203 * 27 7 6 48 48 H 1.08989 * 109.71449 * 173.28655 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0070 1.3470 0.0000 4 6 2.0408 -0.7228 1.2486 5 6 3.5709 -0.6939 1.2667 6 6 4.1060 -1.4255 0.0317 7 7 3.5056 -0.8314 -1.1705 8 6 4.2824 -0.3906 -2.1799 9 8 5.4906 -0.4123 -2.0697 10 6 3.6557 0.1252 -3.4347 11 8 3.2858 1.2792 -3.4984 12 7 3.5013 -0.6914 -4.4958 13 6 3.8477 -2.1161 -4.4006 14 6 4.8179 -2.4644 -5.5338 15 6 4.1997 -2.0559 -6.8729 16 6 3.9629 -0.5440 -6.8874 17 1 4.9088 -0.0261 -6.7289 18 6 3.3842 -0.1382 -8.2183 19 1 3.2169 -0.8817 -8.9837 20 6 3.0682 1.1821 -8.4589 21 7 3.3942 2.1066 -7.5823 22 14 2.1771 1.6578 -10.0302 23 1 0.7165 1.7244 -9.7702 24 1 2.6590 2.9850 -10.4903 25 1 2.4472 0.6421 -11.0795 26 6 2.9778 -0.1751 -5.7679 27 6 2.0420 -0.7237 -1.2494 28 1 -0.3633 0.5129 0.8905 29 1 -0.3633 0.5148 -0.8894 30 1 -0.3632 -1.0277 -0.0005 31 1 1.7211 1.8655 -0.7645 32 1 1.6972 -1.7570 1.2355 33 1 1.6577 -0.2243 2.1390 34 1 3.9334 -1.1884 2.1679 35 1 3.9159 0.3399 1.2550 36 1 5.1903 -1.3228 -0.0126 37 1 3.8409 -2.4812 0.0889 38 1 4.3225 -2.3132 -3.4395 39 1 2.9441 -2.7187 -4.4923 40 1 5.7557 -1.9284 -5.3875 41 1 5.0083 -3.5376 -5.5328 42 1 4.8775 -2.3251 -7.6830 43 1 3.2499 -2.5735 -7.0074 44 1 3.1723 3.0356 -7.7518 45 1 2.0049 -0.6228 -5.9711 46 1 2.8784 0.9088 -5.7091 47 1 1.6065 -1.7217 -1.2978 48 1 1.7623 -0.1594 -2.1389 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327361325.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:01 Heat of formation + Delta-G solvation = -125.155929 kcal Electronic energy + Delta-G solvation = -29805.900994 eV Core-core repulsion = 25860.360665 eV Total energy + Delta-G solvation = -3945.540329 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.86223 -39.27565 -38.05007 -36.78439 -35.48888 -33.45117 -32.91739 -31.88965 -31.68193 -29.91803 -27.28305 -26.66987 -25.20371 -25.02168 -23.14729 -21.95440 -21.68013 -20.40271 -19.45496 -18.50236 -17.62515 -16.95603 -16.53234 -16.20516 -15.79734 -15.24537 -15.01688 -14.81483 -14.57305 -14.44614 -14.19331 -13.79346 -13.64608 -13.47187 -13.24300 -12.94719 -12.76939 -12.68738 -12.49830 -12.39160 -12.14241 -12.01271 -11.88334 -11.27705 -11.21235 -11.06572 -11.02484 -10.95744 -10.70821 -10.56906 -10.44144 -10.28945 -10.25835 -10.00080 -9.32373 -9.18191 -8.92157 -8.72767 -8.44720 -7.97626 -6.05491 -4.12413 2.38759 2.48992 2.93706 3.28215 3.36348 3.38455 3.66268 4.03502 4.31781 4.38450 4.42013 4.54473 4.63659 4.79954 5.02639 5.09122 5.20057 5.21836 5.25698 5.35497 5.36494 5.41459 5.42710 5.55187 5.59197 5.63827 5.71647 5.84330 5.85752 5.89663 6.12163 6.15624 6.24695 6.31313 6.48742 6.58079 6.76297 6.89162 6.96822 7.03953 7.11834 7.51255 7.57442 7.79332 7.86897 7.95139 7.99830 8.28469 8.46101 8.91205 9.52734 11.01215 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017575 B = 0.003765 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.784397 B = 7435.061200 C = 8226.979426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.117 3.883 3 O -0.551 6.551 4 C -0.104 4.104 5 C -0.132 4.132 6 C 0.109 3.891 7 N -0.594 5.594 8 C 0.521 3.479 9 O -0.516 6.516 10 C 0.507 3.493 11 O -0.514 6.514 12 N -0.585 5.585 13 C 0.109 3.891 14 C -0.134 4.134 15 C -0.110 4.110 16 C 0.038 3.962 17 H 0.033 0.967 18 C -0.522 4.522 19 H 0.060 0.940 20 C 0.064 3.936 21 N -0.879 5.879 22 Si 0.891 3.109 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.113 3.887 27 C 0.080 3.920 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.382 0.618 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.264 0.736 45 H 0.050 0.950 46 H 0.118 0.882 47 H 0.081 0.919 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.538 -10.264 17.029 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.075 3.925 3 O -0.358 6.358 4 C -0.141 4.141 5 C -0.170 4.170 6 C -0.013 4.013 7 N -0.329 5.329 8 C 0.305 3.695 9 O -0.391 6.391 10 C 0.288 3.712 11 O -0.389 6.389 12 N -0.319 5.319 13 C -0.015 4.015 14 C -0.172 4.172 15 C -0.147 4.147 16 C 0.019 3.981 17 H 0.051 0.949 18 C -0.560 4.560 19 H 0.078 0.922 20 C -0.139 4.139 21 N -0.516 5.516 22 Si 0.719 3.281 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.007 4.007 27 C -0.044 4.044 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.231 0.769 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.136 0.864 47 H 0.099 0.901 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.797 -9.642 17.606 20.639 hybrid contribution -0.797 0.460 -1.369 1.650 sum -5.594 -9.182 16.237 19.474 Atomic orbital electron populations 1.22443 0.94889 1.02978 1.03234 1.21501 0.92651 0.83575 0.94760 1.86516 1.77255 1.22200 1.49811 1.21518 0.96187 0.99747 0.96663 1.21843 0.95392 1.02520 0.97243 1.21674 1.00057 0.96174 0.83385 1.47971 1.06545 1.60403 1.17999 1.20716 0.87378 0.76652 0.84779 1.90757 1.13556 1.53446 1.81305 1.19999 0.79960 0.86879 0.84352 1.90805 1.48834 1.16837 1.82454 1.48591 1.61726 1.08660 1.12927 1.21697 0.98833 0.81764 0.99159 1.21946 0.98880 1.00181 0.96216 1.21627 0.99315 0.99565 0.94237 1.19065 0.95717 0.89846 0.93472 0.94870 1.21062 1.43131 0.93202 0.98655 0.92189 1.25052 0.95588 0.96569 0.96728 1.69932 1.45131 1.01149 1.35428 0.86592 0.79992 0.77988 0.83539 1.20647 1.21206 1.19856 1.22485 0.96299 1.03087 0.78788 1.22539 0.80045 1.01884 0.99895 0.91290 0.91700 0.91362 0.76908 0.90555 0.90856 0.90683 0.90283 0.88729 0.91222 0.91605 0.91318 0.91724 0.91926 0.92710 0.93061 0.92592 0.93136 0.86372 0.90127 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 8.82 37.16 0.33 -1.04 16 2 C 0.12 1.15 1.01 -90.49 -0.09 1.06 16 3 O -0.55 -6.87 12.18 -35.23 -0.43 -7.30 16 4 C -0.10 -0.86 4.92 -26.69 -0.13 -1.00 16 5 C -0.13 -1.25 5.94 -26.61 -0.16 -1.40 16 6 C 0.11 1.18 6.43 -3.71 -0.02 1.16 16 7 N -0.59 -8.04 2.92 -173.25 -0.51 -8.55 16 8 C 0.52 9.43 5.47 -11.59 -0.06 9.37 16 9 O -0.52 -10.71 16.51 5.50 0.09 -10.62 16 10 C 0.51 10.43 5.62 -11.59 -0.07 10.37 16 11 O -0.51 -12.20 16.31 5.50 0.09 -12.11 16 12 N -0.59 -11.62 2.97 -173.01 -0.51 -12.13 16 13 C 0.11 1.73 6.35 -3.71 -0.02 1.71 16 14 C -0.13 -2.22 6.08 -26.61 -0.16 -2.38 16 15 C -0.11 -2.14 5.10 -26.69 -0.14 -2.27 16 16 C 0.04 0.93 2.22 -91.43 -0.20 0.72 16 17 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 18 C -0.52 -13.83 8.56 -34.44 -0.29 -14.13 16 19 H 0.06 1.55 7.75 -52.49 -0.41 1.15 16 20 C 0.06 1.73 5.23 -17.82 -0.09 1.64 16 21 N -0.88 -25.33 11.65 55.43 0.65 -24.68 16 22 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 C 0.11 2.62 5.41 -3.48 -0.02 2.60 16 27 C 0.08 0.90 5.25 -3.69 -0.02 0.88 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.38 4.39 9.05 45.56 0.41 4.80 16 32 H 0.08 0.49 8.14 -51.94 -0.42 0.07 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.96 7.61 -51.93 -0.40 0.56 16 36 H 0.09 1.17 7.00 -51.93 -0.36 0.81 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.98 6.31 -51.93 -0.33 0.65 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.12 3.21 5.37 -51.93 -0.28 2.93 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.09 1.21 6.22 -51.94 -0.32 0.89 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -32.83 375.58 -8.30 -41.13 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -7.16 Total: 5.50 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -1.16 Total: 7.28 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.37 Total: -45.36 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.25 Total: -30.03 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.83 -8.30 -41.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327361325.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.028 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds