Wall clock time and date at job start Tue Mar 31 2020 14:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 O 1.42896 * 109.49447 * 2 1 4 4 C 1.53042 * 109.49466 * 120.06606 * 2 1 3 5 5 C 1.53040 * 109.53549 * 181.35323 * 4 2 1 6 6 C 1.53191 * 109.30946 * 298.63024 * 5 4 2 7 7 N 1.46927 * 108.89407 * 54.56578 * 6 5 4 8 8 C 1.34779 * 120.63256 * 126.46766 * 7 6 5 9 9 O 1.21348 * 119.99756 * 355.81464 * 8 7 6 10 10 C 1.49444 * 120.00172 * 175.82423 * 8 7 6 11 11 O 1.21347 * 120.00718 * 84.22895 * 10 8 7 12 12 N 1.34780 * 119.99548 * 264.22749 * 10 8 7 13 13 C 1.46925 * 120.63105 * 4.76854 * 12 10 8 14 14 C 1.53194 * 108.77309 * 233.58262 * 13 12 10 15 15 C 1.53042 * 109.31605 * 305.36648 * 14 13 12 16 16 C 1.53040 * 109.53757 * 61.36300 * 15 14 13 17 17 H 1.08995 * 109.49735 * 58.62170 * 16 15 14 18 18 C 1.50703 * 109.49686 * 178.68657 * 16 15 14 19 19 H 1.07999 * 119.99768 * 359.08427 * 18 16 15 20 20 C 1.37876 * 119.99886 * 179.08231 * 18 16 15 21 21 N 1.31508 * 120.00147 * 6.83240 * 20 18 16 22 22 Si 1.86797 * 119.99928 * 186.82288 * 20 18 16 23 23 H 1.48501 * 109.46955 * 94.99732 * 22 20 18 24 24 H 1.48498 * 109.47413 * 215.00046 * 22 20 18 25 25 H 1.48508 * 109.47344 * 335.00265 * 22 20 18 26 26 C 1.46933 * 120.62980 * 184.48692 * 12 10 8 27 27 C 1.46963 * 118.71752 * 306.64308 * 7 6 5 28 28 H 1.08998 * 109.47083 * 299.93811 * 1 2 3 29 29 H 1.08996 * 109.46810 * 59.93525 * 1 2 3 30 30 H 1.08997 * 109.46696 * 179.97438 * 1 2 3 31 31 H 0.96697 * 114.00086 * 300.06144 * 3 2 1 32 32 H 1.08989 * 109.46314 * 61.32715 * 4 2 1 33 33 H 1.09007 * 109.46067 * 301.36790 * 4 2 1 34 34 H 1.09003 * 109.49947 * 178.68235 * 5 4 2 35 35 H 1.08997 * 109.52823 * 58.59522 * 5 4 2 36 36 H 1.09006 * 109.58779 * 174.42025 * 6 5 4 37 37 H 1.08994 * 109.59131 * 294.70853 * 6 5 4 38 38 H 1.08995 * 109.58659 * 353.36714 * 13 12 10 39 39 H 1.08999 * 109.58814 * 113.65887 * 13 12 10 40 40 H 1.09004 * 109.49496 * 65.31634 * 14 13 12 41 41 H 1.08999 * 109.49754 * 185.37984 * 14 13 12 42 42 H 1.08998 * 109.46080 * 181.38873 * 15 14 13 43 43 H 1.09000 * 109.45873 * 301.34372 * 15 14 13 44 44 H 0.97006 * 120.00239 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.58010 * 246.20579 * 26 12 10 46 46 H 1.08998 * 109.58578 * 6.62590 * 26 12 10 47 47 H 1.09006 * 109.46112 * 293.57203 * 27 7 6 48 48 H 1.08989 * 109.71449 * 173.28655 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0070 1.3470 0.0000 4 6 2.0408 -0.7228 1.2486 5 6 3.5709 -0.6939 1.2667 6 6 4.1060 -1.4255 0.0317 7 7 3.5056 -0.8314 -1.1705 8 6 4.2824 -0.3906 -2.1799 9 8 5.4906 -0.4123 -2.0697 10 6 3.6557 0.1252 -3.4347 11 8 3.2858 1.2792 -3.4984 12 7 3.5013 -0.6914 -4.4958 13 6 3.8477 -2.1161 -4.4006 14 6 4.8179 -2.4644 -5.5338 15 6 4.1997 -2.0559 -6.8729 16 6 3.9629 -0.5440 -6.8874 17 1 4.9088 -0.0261 -6.7289 18 6 3.3842 -0.1382 -8.2183 19 1 3.2169 -0.8817 -8.9837 20 6 3.0682 1.1821 -8.4589 21 7 3.3942 2.1066 -7.5823 22 14 2.1771 1.6578 -10.0302 23 1 0.7165 1.7244 -9.7702 24 1 2.6590 2.9850 -10.4903 25 1 2.4472 0.6421 -11.0795 26 6 2.9778 -0.1751 -5.7679 27 6 2.0420 -0.7237 -1.2494 28 1 -0.3633 0.5129 0.8905 29 1 -0.3633 0.5148 -0.8894 30 1 -0.3632 -1.0277 -0.0005 31 1 1.7211 1.8655 -0.7645 32 1 1.6972 -1.7570 1.2355 33 1 1.6577 -0.2243 2.1390 34 1 3.9334 -1.1884 2.1679 35 1 3.9159 0.3399 1.2550 36 1 5.1903 -1.3228 -0.0126 37 1 3.8409 -2.4812 0.0889 38 1 4.3225 -2.3132 -3.4395 39 1 2.9441 -2.7187 -4.4923 40 1 5.7557 -1.9284 -5.3875 41 1 5.0083 -3.5376 -5.5328 42 1 4.8775 -2.3251 -7.6830 43 1 3.2499 -2.5735 -7.0074 44 1 3.1723 3.0356 -7.7518 45 1 2.0049 -0.6228 -5.9711 46 1 2.8784 0.9088 -5.7091 47 1 1.6065 -1.7217 -1.2978 48 1 1.7623 -0.1594 -2.1389 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327361325.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:00 Heat of formation + Delta-G solvation = -149.445597 kcal Electronic energy + Delta-G solvation = -29806.954273 eV Core-core repulsion = 25860.360665 eV Total energy + Delta-G solvation = -3946.593609 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.19148 -40.51303 -39.36574 -38.45333 -36.53426 -35.34729 -33.90421 -33.53544 -32.51294 -31.67712 -28.26981 -27.85395 -26.98396 -26.32835 -24.35425 -23.57726 -22.77358 -21.48406 -20.81920 -19.86113 -19.11923 -18.24235 -18.04775 -17.90955 -17.09870 -16.56692 -16.13850 -16.02706 -15.89013 -15.73317 -15.41472 -15.31335 -15.02971 -14.76403 -14.49427 -14.37570 -14.06296 -13.83361 -13.73647 -13.64915 -13.20185 -13.14589 -12.88358 -12.78470 -12.63565 -12.58745 -12.33808 -12.26831 -12.01230 -11.99337 -11.89079 -11.71176 -11.52189 -11.18411 -11.09880 -10.96218 -10.57108 -10.51339 -9.79279 -9.65084 -8.13916 -6.28748 0.94263 1.12861 1.38231 1.42712 1.44038 1.53926 2.31371 2.42879 3.05468 3.16421 3.28926 3.52257 3.76172 3.84171 3.88653 4.03414 4.06016 4.22471 4.24965 4.30345 4.48643 4.49163 4.53431 4.64017 4.69356 4.72269 4.75230 4.78165 4.84715 4.89290 4.98618 5.01785 5.14531 5.17207 5.19789 5.25790 5.26152 5.36072 5.40350 5.41097 5.57760 5.83916 5.90109 5.92001 6.26201 6.29396 6.60951 6.70124 6.79215 6.86913 7.41273 8.91794 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017575 B = 0.003765 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.784397 B = 7435.061200 C = 8226.979426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.110 3.890 3 O -0.575 6.575 4 C -0.101 4.101 5 C -0.127 4.127 6 C 0.103 3.897 7 N -0.577 5.577 8 C 0.525 3.475 9 O -0.554 6.554 10 C 0.500 3.500 11 O -0.560 6.560 12 N -0.585 5.585 13 C 0.105 3.895 14 C -0.128 4.128 15 C -0.102 4.102 16 C 0.034 3.966 17 H -0.019 1.019 18 C -0.533 4.533 19 H 0.067 0.933 20 C 0.012 3.988 21 N -0.918 5.918 22 Si 0.958 3.042 23 H -0.272 1.272 24 H -0.291 1.291 25 H -0.261 1.261 26 C 0.127 3.873 27 C 0.073 3.927 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.380 0.620 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.039 0.961 41 H 0.109 0.891 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.260 0.740 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.120 0.880 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.386 -14.037 18.298 24.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.069 3.931 3 O -0.382 6.382 4 C -0.138 4.138 5 C -0.165 4.165 6 C -0.018 4.018 7 N -0.310 5.310 8 C 0.307 3.693 9 O -0.432 6.432 10 C 0.283 3.717 11 O -0.439 6.439 12 N -0.317 5.317 13 C -0.016 4.016 14 C -0.166 4.166 15 C -0.140 4.140 16 C 0.015 3.985 17 H -0.001 1.001 18 C -0.572 4.572 19 H 0.085 0.915 20 C -0.188 4.188 21 N -0.556 5.556 22 Si 0.783 3.217 23 H -0.198 1.198 24 H -0.217 1.217 25 H -0.185 1.185 26 C 0.006 3.994 27 C -0.049 4.049 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.229 0.771 32 H 0.129 0.871 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.130 0.870 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.058 0.942 41 H 0.127 0.873 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.138 0.862 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.675 -13.485 18.910 24.166 hybrid contribution -0.216 1.617 -1.718 2.369 sum -6.891 -11.868 17.192 21.998 Atomic orbital electron populations 1.22384 0.92926 1.04518 1.03000 1.21803 0.94164 0.82210 0.94900 1.86507 1.77943 1.23849 1.49858 1.21610 0.94953 1.01467 0.95792 1.21820 0.96497 1.00516 0.97713 1.22016 0.99057 0.98329 0.82349 1.48067 1.07442 1.58172 1.17329 1.20159 0.86980 0.77232 0.84883 1.90740 1.14790 1.55742 1.81916 1.20588 0.79261 0.86369 0.85500 1.90768 1.50810 1.18859 1.83457 1.48595 1.61114 1.10482 1.11533 1.22039 1.00479 0.79396 0.99723 1.21918 0.97527 1.02636 0.94530 1.21506 1.00558 0.95728 0.96179 1.19023 0.93269 0.93050 0.93179 1.00088 1.21484 1.42489 0.93436 0.99751 0.91510 1.25892 0.96354 0.96677 0.99868 1.70126 1.46699 1.01224 1.37601 0.85546 0.78900 0.77437 0.79822 1.19789 1.21718 1.18538 1.21955 0.96602 1.00641 0.80251 1.22835 0.78443 1.03904 0.99721 0.90911 0.92627 0.88857 0.77130 0.87131 0.90248 0.87635 0.93880 0.90630 0.87039 0.90050 0.87591 0.94241 0.87265 0.92802 0.91113 0.93094 0.92022 0.90918 0.86170 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 8.82 71.99 0.64 -1.56 16 2 C 0.11 1.96 1.01 -10.71 -0.01 1.95 16 3 O -0.57 -14.62 12.18 -148.98 -1.81 -16.43 16 4 C -0.10 -1.31 4.92 30.62 0.15 -1.16 16 5 C -0.13 -2.09 5.94 30.67 0.18 -1.91 16 6 C 0.10 1.97 6.43 86.36 0.56 2.53 16 7 N -0.58 -14.85 2.92 -820.40 -2.40 -17.25 16 8 C 0.52 19.27 5.47 87.27 0.48 19.75 16 9 O -0.55 -23.64 16.51 -3.24 -0.05 -23.70 16 10 C 0.50 21.47 5.62 87.27 0.49 21.96 16 11 O -0.56 -28.62 16.31 -3.24 -0.05 -28.68 16 12 N -0.58 -23.54 2.97 -819.64 -2.43 -25.98 16 13 C 0.11 3.11 6.35 86.36 0.55 3.65 16 14 C -0.13 -3.98 6.08 30.67 0.19 -3.80 16 15 C -0.10 -3.86 5.10 30.62 0.16 -3.70 16 16 C 0.03 1.70 2.22 -11.32 -0.03 1.68 16 17 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 18 C -0.53 -28.77 8.56 25.60 0.22 -28.55 16 19 H 0.07 3.43 7.75 -2.91 -0.02 3.41 16 20 C 0.01 0.64 5.23 84.66 0.44 1.09 16 21 N -0.92 -55.72 11.65 21.45 0.25 -55.47 16 22 Si 0.96 43.50 29.54 68.60 2.03 45.52 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 26 C 0.13 6.10 5.41 86.51 0.47 6.57 16 27 C 0.07 1.50 5.25 86.35 0.45 1.95 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.38 9.51 9.05 -74.06 -0.67 8.84 16 32 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 0.99 8.14 -2.38 -0.02 0.98 16 34 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.04 1.03 7.61 -2.39 -0.02 1.01 16 36 H 0.08 1.78 7.00 -2.38 -0.02 1.77 16 37 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 2.20 6.31 -2.39 -0.02 2.19 16 39 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 45 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 46 H 0.07 4.22 5.37 -2.39 -0.01 4.20 16 47 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 48 H 0.07 1.73 6.22 -2.39 -0.01 1.72 16 Total: -1.00 -78.89 375.58 0.74 -78.15 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.29 Total: 23.40 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: 4.93 Total: 20.44 kcal Atomic # 7 Polarization: -94.12 SS G_CDS: -4.58 Total: -98.70 kcal Atomic # 8 Polarization: -66.88 SS G_CDS: -1.92 Total: -68.80 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -78.89 0.74 -78.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327361325.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.298 kcal (2) G-P(sol) polarization free energy of solvation -78.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds