Wall clock time and date at job start Tue Mar 31 2020 15:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46949 * 2 1 4 4 O 1.42904 * 109.47147 * 240.00144 * 2 1 3 5 5 C 1.52997 * 109.47139 * 119.99978 * 2 1 3 6 6 C 1.53502 * 114.20747 * 180.02562 * 5 2 1 7 7 N 1.47067 * 87.98479 * 220.34335 * 6 5 2 8 8 C 1.34771 * 136.05862 * 207.07928 * 7 6 5 9 9 O 1.21347 * 120.00383 * 0.02562 * 8 7 6 10 10 C 1.49455 * 120.00213 * 180.02562 * 8 7 6 11 11 O 1.21348 * 119.99772 * 353.45114 * 10 8 7 12 12 N 1.34775 * 120.00272 * 173.46114 * 10 8 7 13 13 C 1.46927 * 120.62771 * 353.00978 * 12 10 8 14 14 C 1.53193 * 108.77079 * 126.41824 * 13 12 10 15 15 C 1.53039 * 109.31520 * 54.63677 * 14 13 12 16 16 C 1.53040 * 109.53486 * 298.63379 * 15 14 13 17 17 H 1.09001 * 109.52694 * 301.39332 * 16 15 14 18 18 C 1.50706 * 109.49574 * 181.31553 * 16 15 14 19 19 H 1.08006 * 119.99944 * 0.15685 * 18 16 15 20 20 C 1.37869 * 120.00015 * 180.43816 * 18 16 15 21 21 N 1.31512 * 120.00162 * 359.72380 * 20 18 16 22 22 Si 1.86797 * 120.00188 * 179.72476 * 20 18 16 23 23 H 1.48499 * 109.47194 * 59.99687 * 22 20 18 24 24 H 1.48499 * 109.47561 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47379 * 299.99861 * 22 20 18 26 26 C 1.46921 * 120.63073 * 173.03946 * 12 10 8 27 27 C 1.47074 * 87.88573 * 27.34112 * 7 6 5 28 28 H 1.08997 * 109.47002 * 299.99788 * 1 2 3 29 29 H 1.08997 * 109.46924 * 60.00526 * 1 2 3 30 30 H 1.09001 * 109.46594 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47086 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47542 * 299.99827 * 3 2 1 33 33 H 1.09007 * 109.47016 * 60.00225 * 3 2 1 34 34 H 0.96698 * 113.99799 * 299.99505 * 4 2 1 35 35 H 1.08999 * 113.41594 * 313.20238 * 5 2 1 36 36 H 1.08995 * 113.47043 * 105.56667 * 6 5 2 37 37 H 1.08997 * 113.46520 * 335.12315 * 6 5 2 38 38 H 1.08997 * 109.58736 * 246.20471 * 13 12 10 39 39 H 1.08998 * 109.58676 * 6.63091 * 13 12 10 40 40 H 1.09006 * 109.49586 * 174.58565 * 14 13 12 41 41 H 1.08997 * 109.50152 * 294.67955 * 14 13 12 42 42 H 1.08996 * 109.46225 * 178.61049 * 15 14 13 43 43 H 1.09009 * 109.45957 * 58.65272 * 15 14 13 44 44 H 0.97001 * 120.00528 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.58735 * 113.79657 * 26 12 10 46 46 H 1.08997 * 109.70776 * 353.43884 * 26 12 10 47 47 H 1.08998 * 113.46516 * 87.43462 * 27 7 6 48 48 H 1.08998 * 113.46810 * 217.87339 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 6 3.5698 -0.7841 1.3593 7 7 3.4262 -2.1642 1.8464 8 6 4.1360 -2.9929 2.6375 9 8 5.1776 -2.6152 3.1324 10 6 3.6404 -4.3773 2.9052 11 8 2.5443 -4.7163 2.5100 12 7 4.4107 -5.2490 3.5857 13 6 5.7957 -4.9076 3.9378 14 6 5.9824 -5.0990 5.4462 15 6 5.5683 -6.5211 5.8311 16 6 4.0898 -6.7318 5.4969 17 1 3.4869 -5.9994 6.0337 18 6 3.6748 -8.1217 5.9059 19 1 4.3928 -8.7876 6.3614 20 6 2.3800 -8.5451 5.6934 21 7 1.5057 -7.7343 5.1386 22 14 1.8676 -10.2704 6.1933 23 1 2.0656 -10.4416 7.6550 24 1 0.4352 -10.4773 5.8608 25 1 2.6944 -11.2638 5.4621 26 6 3.8816 -6.5590 3.9890 27 6 2.1704 -2.2445 1.0852 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.7211 -1.5952 -1.2329 35 1 1.5388 -0.4081 2.1651 36 1 3.9799 -0.1016 2.1036 37 1 4.0774 -0.7139 0.3973 38 1 6.4814 -5.5613 3.3989 39 1 5.9944 -3.8689 3.6738 40 1 7.0293 -4.9420 5.7060 41 1 5.3622 -4.3815 5.9835 42 1 5.7235 -6.6678 6.9000 43 1 6.1722 -7.2383 5.2750 44 1 0.5947 -8.0320 4.9894 45 1 4.4113 -7.3474 3.4543 46 1 2.8176 -6.6125 3.7586 47 1 2.3091 -2.5592 0.0509 48 1 1.3882 -2.8061 1.5959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327728875.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:58 Heat of formation + Delta-G solvation = -65.781797 kcal Electronic energy + Delta-G solvation = -28819.939214 eV Core-core repulsion = 24876.973540 eV Total energy + Delta-G solvation = -3942.965674 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.14445 -39.79429 -38.01106 -36.99835 -36.51785 -33.30366 -32.76221 -31.73791 -29.74347 -29.62349 -27.97677 -26.16730 -25.55659 -24.99329 -23.53032 -21.88365 -21.56134 -20.26981 -19.36425 -18.57943 -17.67024 -16.80531 -16.76748 -16.06556 -15.92529 -15.64146 -15.15095 -14.94721 -14.57122 -14.02365 -13.86759 -13.79350 -13.62380 -13.25952 -13.06822 -12.80665 -12.67542 -12.59050 -12.49457 -12.44988 -12.19883 -12.08086 -11.98047 -11.77324 -11.42240 -11.25540 -10.97368 -10.73250 -10.67290 -10.47610 -10.29750 -10.26053 -10.01381 -9.85171 -9.20777 -9.12309 -8.86933 -8.51961 -8.41118 -7.82489 -6.03153 -4.11307 1.78836 2.41206 3.30447 3.35954 3.37798 3.60609 3.72534 3.82933 3.89467 4.39724 4.42650 4.51399 4.59724 4.75302 4.83914 5.02985 5.20953 5.27278 5.28677 5.31060 5.36288 5.44177 5.52309 5.61114 5.66905 5.69649 5.70668 5.77641 5.89558 5.94477 5.95252 6.21592 6.38481 6.45858 6.61006 6.71534 6.87609 6.99169 7.07658 7.16956 7.30870 7.48620 7.58448 7.80281 7.91391 7.95166 8.16679 8.34679 8.58920 8.92457 9.54113 11.02396 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017950 B = 0.003101 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.556493 B = 9027.417897 C =10245.448370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.141 3.859 3 C -0.139 4.139 4 O -0.559 6.559 5 C -0.158 4.158 6 C 0.114 3.886 7 N -0.620 5.620 8 C 0.539 3.461 9 O -0.515 6.515 10 C 0.500 3.500 11 O -0.522 6.522 12 N -0.568 5.568 13 C 0.050 3.950 14 C -0.127 4.127 15 C -0.113 4.113 16 C 0.041 3.959 17 H 0.029 0.971 18 C -0.519 4.519 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.883 5.883 22 Si 0.895 3.105 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.110 3.890 27 C 0.107 3.893 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.377 0.623 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.142 0.858 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.264 0.736 45 H 0.047 0.953 46 H 0.123 0.877 47 H 0.088 0.912 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.785 16.866 -10.692 19.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.099 3.901 3 C -0.196 4.196 4 O -0.367 6.367 5 C -0.177 4.177 6 C -0.009 4.009 7 N -0.355 5.355 8 C 0.326 3.674 9 O -0.393 6.393 10 C 0.281 3.719 11 O -0.399 6.399 12 N -0.300 5.300 13 C -0.071 4.071 14 C -0.165 4.165 15 C -0.151 4.151 16 C 0.022 3.978 17 H 0.047 0.953 18 C -0.558 4.558 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.521 5.521 22 Si 0.722 3.278 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.010 4.010 27 C -0.016 4.016 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.227 0.773 35 H 0.132 0.868 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.073 0.927 39 H 0.158 0.842 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.141 0.859 47 H 0.106 0.894 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.968 17.271 -10.643 20.310 hybrid contribution -0.509 -1.699 0.492 1.841 sum 0.459 15.571 -10.150 18.593 Atomic orbital electron populations 1.22473 0.95087 1.03041 1.02979 1.20992 0.92895 0.92749 0.83437 1.21745 1.02116 0.93089 1.02618 1.86573 1.77253 1.29354 1.43520 1.23879 0.96890 0.96371 1.00565 1.23070 0.95584 0.82343 0.99858 1.49270 1.25310 1.15137 1.45828 1.20447 0.82651 0.86108 0.78234 1.90309 1.22614 1.75472 1.50855 1.19641 0.85914 0.85100 0.81265 1.90718 1.20632 1.77721 1.50817 1.48434 1.12925 1.17361 1.51243 1.23062 0.81627 1.06167 0.96267 1.21855 1.00204 0.99020 0.95459 1.21669 0.99446 0.93978 1.00013 1.18969 0.90499 0.97309 0.91035 0.95292 1.21065 0.95655 0.98445 1.40596 0.92281 1.25055 0.96611 0.97494 0.94892 1.69860 1.04308 1.35399 1.42529 0.86618 0.77503 0.84636 0.79020 1.20258 1.21241 1.20225 1.22480 1.02722 0.78057 0.97755 1.23181 0.86585 0.95022 0.96768 0.91293 0.91607 0.91827 0.91669 0.91679 0.90943 0.77292 0.86753 0.90152 0.88747 0.92687 0.84179 0.92251 0.92358 0.93049 0.93229 0.92601 0.93423 0.85884 0.89415 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 8.82 37.16 0.33 -0.78 16 2 C 0.14 0.99 1.03 -90.62 -0.09 0.90 16 3 C -0.14 -0.87 8.65 37.16 0.32 -0.55 16 4 O -0.56 -4.50 12.19 -35.23 -0.43 -4.93 16 5 C -0.16 -1.33 3.44 -89.97 -0.31 -1.64 16 6 C 0.11 1.17 7.17 -8.49 -0.06 1.10 16 7 N -0.62 -8.75 3.69 -185.53 -0.68 -9.44 16 8 C 0.54 9.63 8.03 -11.59 -0.09 9.53 16 9 O -0.51 -9.58 13.88 5.50 0.08 -9.50 16 10 C 0.50 10.46 7.74 -11.58 -0.09 10.37 16 11 O -0.52 -11.92 14.62 5.50 0.08 -11.84 16 12 N -0.57 -12.22 2.97 -173.28 -0.51 -12.73 16 13 C 0.05 0.94 6.27 -3.71 -0.02 0.91 16 14 C -0.13 -2.34 6.08 -26.61 -0.16 -2.50 16 15 C -0.11 -2.38 5.11 -26.69 -0.14 -2.52 16 16 C 0.04 1.03 2.25 -91.65 -0.21 0.83 16 17 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 18 C -0.52 -14.13 8.57 -34.44 -0.30 -14.43 16 19 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 21 N -0.88 -25.43 11.38 55.43 0.63 -24.80 16 22 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.11 2.70 5.37 -3.71 -0.02 2.68 16 27 C 0.11 1.19 7.00 -8.36 -0.06 1.13 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.43 7.48 -51.93 -0.39 0.04 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 34 H 0.38 2.23 6.88 45.56 0.31 2.55 16 35 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.91 7.80 -51.93 -0.41 0.50 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.14 2.58 3.78 -56.76 -0.21 2.36 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 46 H 0.12 3.45 5.16 -51.93 -0.27 3.18 16 47 H 0.09 0.81 5.90 -51.93 -0.31 0.50 16 48 H 0.10 1.27 7.28 -51.93 -0.38 0.89 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -32.01 374.73 -8.32 -40.33 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -7.11 Total: 4.45 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -0.99 Total: 6.66 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.57 Total: -46.97 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.27 Total: -26.27 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.01 -8.32 -40.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327728875.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.454 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds