Wall clock time and date at job start Tue Mar 31 2020 15:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46949 * 2 1 4 4 O 1.42904 * 109.47147 * 240.00144 * 2 1 3 5 5 C 1.52997 * 109.47139 * 119.99978 * 2 1 3 6 6 C 1.53502 * 114.20747 * 180.02562 * 5 2 1 7 7 N 1.47067 * 87.98479 * 220.34335 * 6 5 2 8 8 C 1.34771 * 136.05862 * 207.07928 * 7 6 5 9 9 O 1.21347 * 120.00383 * 0.02562 * 8 7 6 10 10 C 1.49455 * 120.00213 * 180.02562 * 8 7 6 11 11 O 1.21348 * 119.99772 * 353.45114 * 10 8 7 12 12 N 1.34775 * 120.00272 * 173.46114 * 10 8 7 13 13 C 1.46927 * 120.62771 * 353.00978 * 12 10 8 14 14 C 1.53193 * 108.77079 * 126.41824 * 13 12 10 15 15 C 1.53039 * 109.31520 * 54.63677 * 14 13 12 16 16 C 1.53040 * 109.53486 * 298.63379 * 15 14 13 17 17 H 1.09001 * 109.52694 * 301.39332 * 16 15 14 18 18 C 1.50706 * 109.49574 * 181.31553 * 16 15 14 19 19 H 1.08006 * 119.99944 * 0.15685 * 18 16 15 20 20 C 1.37869 * 120.00015 * 180.43816 * 18 16 15 21 21 N 1.31512 * 120.00162 * 359.72380 * 20 18 16 22 22 Si 1.86797 * 120.00188 * 179.72476 * 20 18 16 23 23 H 1.48499 * 109.47194 * 59.99687 * 22 20 18 24 24 H 1.48499 * 109.47561 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47379 * 299.99861 * 22 20 18 26 26 C 1.46921 * 120.63073 * 173.03946 * 12 10 8 27 27 C 1.47074 * 87.88573 * 27.34112 * 7 6 5 28 28 H 1.08997 * 109.47002 * 299.99788 * 1 2 3 29 29 H 1.08997 * 109.46924 * 60.00526 * 1 2 3 30 30 H 1.09001 * 109.46594 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47086 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47542 * 299.99827 * 3 2 1 33 33 H 1.09007 * 109.47016 * 60.00225 * 3 2 1 34 34 H 0.96698 * 113.99799 * 299.99505 * 4 2 1 35 35 H 1.08999 * 113.41594 * 313.20238 * 5 2 1 36 36 H 1.08995 * 113.47043 * 105.56667 * 6 5 2 37 37 H 1.08997 * 113.46520 * 335.12315 * 6 5 2 38 38 H 1.08997 * 109.58736 * 246.20471 * 13 12 10 39 39 H 1.08998 * 109.58676 * 6.63091 * 13 12 10 40 40 H 1.09006 * 109.49586 * 174.58565 * 14 13 12 41 41 H 1.08997 * 109.50152 * 294.67955 * 14 13 12 42 42 H 1.08996 * 109.46225 * 178.61049 * 15 14 13 43 43 H 1.09009 * 109.45957 * 58.65272 * 15 14 13 44 44 H 0.97001 * 120.00528 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.58735 * 113.79657 * 26 12 10 46 46 H 1.08997 * 109.70776 * 353.43884 * 26 12 10 47 47 H 1.08998 * 113.46516 * 87.43462 * 27 7 6 48 48 H 1.08998 * 113.46810 * 217.87339 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 6 3.5698 -0.7841 1.3593 7 7 3.4262 -2.1642 1.8464 8 6 4.1360 -2.9929 2.6375 9 8 5.1776 -2.6152 3.1324 10 6 3.6404 -4.3773 2.9052 11 8 2.5443 -4.7163 2.5100 12 7 4.4107 -5.2490 3.5857 13 6 5.7957 -4.9076 3.9378 14 6 5.9824 -5.0990 5.4462 15 6 5.5683 -6.5211 5.8311 16 6 4.0898 -6.7318 5.4969 17 1 3.4869 -5.9994 6.0337 18 6 3.6748 -8.1217 5.9059 19 1 4.3928 -8.7876 6.3614 20 6 2.3800 -8.5451 5.6934 21 7 1.5057 -7.7343 5.1386 22 14 1.8676 -10.2704 6.1933 23 1 2.0656 -10.4416 7.6550 24 1 0.4352 -10.4773 5.8608 25 1 2.6944 -11.2638 5.4621 26 6 3.8816 -6.5590 3.9890 27 6 2.1704 -2.2445 1.0852 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.7211 -1.5952 -1.2329 35 1 1.5388 -0.4081 2.1651 36 1 3.9799 -0.1016 2.1036 37 1 4.0774 -0.7139 0.3973 38 1 6.4814 -5.5613 3.3989 39 1 5.9944 -3.8689 3.6738 40 1 7.0293 -4.9420 5.7060 41 1 5.3622 -4.3815 5.9835 42 1 5.7235 -6.6678 6.9000 43 1 6.1722 -7.2383 5.2750 44 1 0.5947 -8.0320 4.9894 45 1 4.4113 -7.3474 3.4543 46 1 2.8176 -6.6125 3.7586 47 1 2.3091 -2.5592 0.0509 48 1 1.3882 -2.8061 1.5959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327728875.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:57 Heat of formation + Delta-G solvation = -88.322339 kcal Electronic energy + Delta-G solvation = -28820.916645 eV Core-core repulsion = 24876.973540 eV Total energy + Delta-G solvation = -3943.943105 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.28347 -41.09778 -39.37616 -38.54897 -37.57907 -35.25047 -33.53925 -33.36105 -31.60127 -30.69909 -28.54662 -27.61337 -26.85256 -26.63508 -24.71079 -23.58751 -22.88592 -21.23174 -20.69194 -20.00968 -18.87327 -18.41830 -17.99922 -17.74227 -17.15610 -16.85451 -16.51701 -16.34633 -15.80772 -15.53021 -15.29184 -15.11115 -14.66908 -14.59019 -14.47081 -14.32077 -13.97253 -13.79768 -13.48990 -13.36769 -13.22549 -13.08306 -12.95675 -12.86559 -12.81071 -12.52689 -12.50242 -12.31523 -12.20727 -12.00515 -11.74300 -11.62895 -11.35375 -11.14873 -11.00352 -10.93679 -10.56045 -10.00399 -9.97787 -9.56829 -8.13552 -6.30292 0.29692 1.12145 1.41507 1.43062 1.51088 2.08288 2.31197 2.41810 2.99828 3.12308 3.17436 3.30693 3.74652 3.81691 4.04489 4.11430 4.15220 4.20530 4.27275 4.35865 4.37440 4.45214 4.51564 4.55624 4.68681 4.72628 4.78162 4.84298 4.94442 4.97490 4.98293 5.02700 5.10659 5.16458 5.18162 5.20827 5.29242 5.35659 5.41655 5.44609 5.54585 5.81252 5.91249 6.19817 6.27760 6.37863 6.60729 6.79789 6.80631 6.96008 7.39492 8.90407 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017950 B = 0.003101 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.556493 B = 9027.417897 C =10245.448370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.146 3.854 3 C -0.140 4.140 4 O -0.570 6.570 5 C -0.135 4.135 6 C 0.114 3.886 7 N -0.621 5.621 8 C 0.540 3.460 9 O -0.527 6.527 10 C 0.490 3.510 11 O -0.551 6.551 12 N -0.576 5.576 13 C 0.050 3.950 14 C -0.120 4.120 15 C -0.107 4.107 16 C 0.040 3.960 17 H -0.012 1.012 18 C -0.537 4.537 19 H 0.063 0.937 20 C 0.012 3.988 21 N -0.915 5.915 22 Si 0.961 3.039 23 H -0.270 1.270 24 H -0.286 1.286 25 H -0.268 1.268 26 C 0.123 3.877 27 C 0.099 3.901 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.385 0.615 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.151 0.849 40 H 0.098 0.902 41 H 0.045 0.955 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.262 0.738 45 H 0.043 0.957 46 H 0.085 0.915 47 H 0.109 0.891 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.756 18.013 -11.270 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.105 3.895 3 C -0.197 4.197 4 O -0.380 6.380 5 C -0.154 4.154 6 C -0.006 4.006 7 N -0.355 5.355 8 C 0.325 3.675 9 O -0.407 6.407 10 C 0.272 3.728 11 O -0.430 6.430 12 N -0.308 5.308 13 C -0.071 4.071 14 C -0.158 4.158 15 C -0.145 4.145 16 C 0.021 3.979 17 H 0.006 0.994 18 C -0.575 4.575 19 H 0.081 0.919 20 C -0.188 4.188 21 N -0.553 5.553 22 Si 0.786 3.214 23 H -0.195 1.195 24 H -0.212 1.212 25 H -0.193 1.193 26 C 0.002 3.998 27 C -0.023 4.023 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.236 0.764 35 H 0.138 0.862 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.168 0.832 40 H 0.117 0.883 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.127 0.873 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.945 18.455 -11.242 21.697 hybrid contribution -0.875 -1.994 0.613 2.262 sum 1.071 16.461 -10.630 19.624 Atomic orbital electron populations 1.22466 0.94307 1.03105 1.03611 1.21022 0.93405 0.92913 0.82200 1.21794 1.02052 0.92403 1.03479 1.86565 1.77525 1.30090 1.43785 1.23804 0.95697 0.94127 1.01790 1.23350 0.97005 0.79828 1.00422 1.49431 1.25486 1.16179 1.44366 1.19628 0.83001 0.85134 0.79693 1.90272 1.23045 1.75343 1.51993 1.20338 0.85461 0.86557 0.80447 1.90689 1.21842 1.78655 1.51858 1.48464 1.14269 1.16531 1.51490 1.23280 0.80058 1.07140 0.96575 1.21819 1.02213 0.96659 0.95083 1.21566 0.96384 0.96103 1.00399 1.18901 0.92813 0.95375 0.90856 0.99390 1.21453 0.96059 0.99443 1.40580 0.91880 1.25886 0.96691 1.01405 0.94813 1.70040 1.04416 1.37282 1.43591 0.85571 0.77025 0.79906 0.78933 1.19457 1.21184 1.19267 1.21948 1.00567 0.79877 0.97417 1.23450 0.84768 0.96959 0.97137 0.90482 0.91190 0.92103 0.91827 0.91450 0.89562 0.76425 0.86175 0.89308 0.87396 0.91058 0.83246 0.88325 0.93652 0.92672 0.92360 0.92911 0.93857 0.89628 0.87334 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 8.82 71.98 0.63 -1.21 16 2 C 0.15 1.73 1.03 -10.79 -0.01 1.72 16 3 C -0.14 -1.39 8.65 71.98 0.62 -0.77 16 4 O -0.57 -7.96 12.19 -148.98 -1.82 -9.78 16 5 C -0.13 -2.03 3.44 -10.37 -0.04 -2.07 16 6 C 0.11 2.11 7.17 83.19 0.60 2.70 16 7 N -0.62 -17.02 3.69 -859.25 -3.17 -20.19 16 8 C 0.54 19.22 8.03 87.27 0.70 19.92 16 9 O -0.53 -19.13 13.88 -3.24 -0.04 -19.17 16 10 C 0.49 21.09 7.74 87.27 0.68 21.76 16 11 O -0.55 -26.41 14.62 -3.24 -0.05 -26.46 16 12 N -0.58 -25.34 2.97 -820.50 -2.44 -27.78 16 13 C 0.05 1.80 6.27 86.36 0.54 2.34 16 14 C -0.12 -4.24 6.08 30.67 0.19 -4.05 16 15 C -0.11 -4.44 5.11 30.62 0.16 -4.28 16 16 C 0.04 2.07 2.25 -11.46 -0.03 2.04 16 17 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 18 C -0.54 -29.81 8.57 25.60 0.22 -29.60 16 19 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 20 C 0.01 0.65 5.30 84.65 0.45 1.10 16 21 N -0.91 -54.72 11.38 21.44 0.24 -54.47 16 22 Si 0.96 43.96 29.54 68.60 2.03 45.98 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 C 0.12 6.32 5.37 86.36 0.46 6.78 16 27 C 0.10 2.13 7.00 83.27 0.58 2.71 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.66 7.48 -2.39 -0.02 0.64 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.38 3.88 6.88 -74.06 -0.51 3.37 16 35 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.11 1.78 7.80 -2.39 -0.02 1.76 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.15 5.30 3.78 -78.84 -0.30 5.00 16 40 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 41 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 44 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 45 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.09 5.07 5.16 -2.39 -0.01 5.06 16 47 H 0.11 1.88 5.90 -2.39 -0.01 1.87 16 48 H 0.08 2.03 7.28 -2.39 -0.02 2.01 16 Total: -1.00 -71.54 374.73 0.68 -70.86 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.17 Total: 21.91 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: 5.76 Total: 19.10 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -5.36 Total: -102.44 kcal Atomic # 8 Polarization: -53.50 SS G_CDS: -1.91 Total: -55.41 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -71.54 0.68 -70.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327728875.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.464 kcal (2) G-P(sol) polarization free energy of solvation -71.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds