Wall clock time and date at job start Tue Mar 31 2020 15:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47263 * 2 1 4 4 O 1.42899 * 109.47030 * 239.99658 * 2 1 3 5 5 C 1.52997 * 109.46946 * 119.99939 * 2 1 3 6 6 C 1.53498 * 114.20786 * 65.20025 * 5 2 1 7 7 N 1.47067 * 87.98957 * 139.65378 * 6 5 2 8 8 C 1.34773 * 136.06471 * 152.84300 * 7 6 5 9 9 O 1.21353 * 119.99773 * 0.02562 * 8 7 6 10 10 C 1.49449 * 120.00439 * 180.02562 * 8 7 6 11 11 O 1.21350 * 119.99907 * 353.22331 * 10 8 7 12 12 N 1.34781 * 119.99930 * 173.21754 * 10 8 7 13 13 C 1.46927 * 120.63193 * 351.35322 * 12 10 8 14 14 C 1.53188 * 108.89223 * 233.55928 * 13 12 10 15 15 C 1.53071 * 109.29279 * 305.57622 * 14 13 12 16 16 C 1.53038 * 109.65984 * 61.15674 * 15 14 13 17 17 H 1.08995 * 109.50061 * 58.64999 * 16 15 14 18 18 C 1.50703 * 109.49946 * 178.74697 * 16 15 14 19 19 H 1.08007 * 119.99807 * 359.83936 * 18 16 15 20 20 C 1.37871 * 120.00220 * 179.83567 * 18 16 15 21 21 N 1.31517 * 119.99875 * 0.02562 * 20 18 16 22 22 Si 1.86804 * 120.00313 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.46985 * 60.00178 * 22 20 18 24 24 H 1.48499 * 109.47266 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46712 * 300.00248 * 22 20 18 26 26 C 1.46922 * 120.62884 * 171.37199 * 12 10 8 27 27 C 1.47075 * 87.88182 * 333.10451 * 7 6 5 28 28 H 1.08993 * 109.47228 * 300.00023 * 1 2 3 29 29 H 1.09002 * 109.46802 * 60.00258 * 1 2 3 30 30 H 1.09002 * 109.47049 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47416 * 175.52587 * 3 2 1 32 32 H 1.09003 * 109.47268 * 295.52844 * 3 2 1 33 33 H 1.09001 * 109.47101 * 55.52451 * 3 2 1 34 34 H 0.96696 * 114.00649 * 300.00336 * 4 2 1 35 35 H 1.09001 * 113.41823 * 292.00271 * 5 2 1 36 36 H 1.09005 * 113.46766 * 24.87726 * 6 5 2 37 37 H 1.09000 * 113.46968 * 254.43173 * 6 5 2 38 38 H 1.09007 * 109.58318 * 353.41791 * 13 12 10 39 39 H 1.08997 * 109.58576 * 113.69640 * 13 12 10 40 40 H 1.08999 * 109.50378 * 65.38848 * 14 13 12 41 41 H 1.09007 * 109.49724 * 185.48595 * 14 13 12 42 42 H 1.09002 * 109.35103 * 301.12890 * 15 14 13 43 43 H 1.09000 * 109.44568 * 181.23955 * 15 14 13 44 44 H 0.97000 * 119.99900 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.58694 * 246.15712 * 26 12 10 46 46 H 1.09003 * 109.58690 * 6.44166 * 26 12 10 47 47 H 1.08993 * 113.46750 * 141.68066 * 27 7 6 48 48 H 1.09001 * 113.46473 * 272.11178 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2492 6 6 1.6961 -2.2164 1.2972 7 7 3.0442 -2.4563 1.8338 8 6 3.6246 -3.3831 2.6215 9 8 2.9671 -4.3038 3.0607 10 6 5.0777 -3.2772 2.9543 11 8 5.7625 -2.4304 2.4190 12 7 5.6275 -4.1222 3.8489 13 6 4.7830 -5.0244 4.6436 14 6 5.1062 -4.8272 6.1279 15 6 6.6097 -5.0130 6.3472 16 6 7.3810 -3.9673 5.5387 17 1 7.0717 -2.9686 5.8466 18 6 8.8591 -4.1338 5.7811 19 1 9.2133 -4.9064 6.4476 20 6 9.7591 -3.3000 5.1523 21 7 9.3277 -2.3589 4.3411 22 14 11.5912 -3.5068 5.4522 23 1 12.0107 -4.8683 5.0336 24 1 12.3392 -2.4939 4.6649 25 1 11.8801 -3.3221 6.8971 26 6 7.0827 -4.1582 4.0482 27 6 3.4791 -1.2358 1.1378 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1271 1.4435 0.0802 32 1 1.7436 1.9326 -0.9273 33 1 1.6127 1.9789 0.8472 34 1 1.7210 -1.5952 -1.2329 35 1 1.8311 -0.1848 2.1748 36 1 1.5360 -2.6568 0.3131 37 1 0.8996 -2.4563 2.0016 38 1 3.7327 -4.7941 4.4645 39 1 4.9840 -6.0574 4.3599 40 1 4.8176 -3.8213 6.4327 41 1 4.5568 -5.5590 6.7203 42 1 6.9016 -6.0115 6.0215 43 1 6.8393 -4.8950 7.4062 44 1 9.9609 -1.7720 3.8989 45 1 7.4731 -5.1208 3.7178 46 1 7.5501 -3.3579 3.4744 47 1 4.1956 -0.6435 1.7069 48 1 3.7988 -1.4123 0.1108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327728876.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:02 Heat of formation + Delta-G solvation = -70.936160 kcal Electronic energy + Delta-G solvation = -28813.024147 eV Core-core repulsion = 24869.834963 eV Total energy + Delta-G solvation = -3943.189184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.15231 -39.77512 -38.00766 -36.96283 -36.52092 -33.29542 -32.74365 -31.74628 -29.75948 -29.61824 -27.98588 -26.14794 -25.55833 -24.98103 -23.51742 -21.89475 -21.55504 -20.22320 -19.38240 -18.53112 -17.60518 -16.91139 -16.75631 -16.08285 -15.93359 -15.42639 -15.27538 -14.96717 -14.50950 -14.02429 -13.90923 -13.73538 -13.44499 -13.34221 -13.00432 -12.90326 -12.65600 -12.60343 -12.52068 -12.43537 -12.19108 -12.13508 -11.96272 -11.78326 -11.37363 -11.30830 -10.95951 -10.75004 -10.60534 -10.45299 -10.33067 -10.25855 -10.08011 -9.85387 -9.20464 -9.11038 -8.92150 -8.52269 -8.43287 -7.80706 -6.00815 -4.09640 1.80937 2.41126 3.31615 3.37334 3.38929 3.61458 3.68417 3.81504 3.98306 4.41006 4.42761 4.51606 4.60888 4.69977 4.80484 4.99361 5.13533 5.26722 5.28938 5.30278 5.41714 5.44847 5.54441 5.62477 5.62760 5.66468 5.77053 5.78581 5.90072 5.91647 6.01088 6.21610 6.33803 6.42391 6.60218 6.70027 6.85988 6.98804 7.06229 7.18673 7.30284 7.47938 7.58338 7.79346 7.88923 7.96367 8.17537 8.36164 8.60980 8.94062 9.55831 11.04372 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017700 B = 0.003108 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.515626 B = 9005.636014 C =10186.577013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.141 3.859 3 C -0.139 4.139 4 O -0.555 6.555 5 C -0.158 4.158 6 C 0.108 3.892 7 N -0.623 5.623 8 C 0.537 3.463 9 O -0.520 6.520 10 C 0.498 3.502 11 O -0.515 6.515 12 N -0.571 5.571 13 C 0.072 3.928 14 C -0.133 4.133 15 C -0.113 4.113 16 C 0.042 3.958 17 H 0.029 0.971 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.109 3.891 27 C 0.117 3.883 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.374 0.626 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.124 0.876 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.264 0.736 45 H 0.048 0.952 46 H 0.124 0.876 47 H 0.092 0.908 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.986 3.693 -8.041 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.100 3.900 3 C -0.197 4.197 4 O -0.361 6.361 5 C -0.178 4.178 6 C -0.014 4.014 7 N -0.358 5.358 8 C 0.324 3.676 9 O -0.398 6.398 10 C 0.279 3.721 11 O -0.391 6.391 12 N -0.303 5.303 13 C -0.050 4.050 14 C -0.171 4.171 15 C -0.150 4.150 16 C 0.023 3.977 17 H 0.048 0.952 18 C -0.559 4.559 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.518 5.518 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.203 1.203 26 C -0.010 4.010 27 C -0.006 4.006 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.222 0.778 35 H 0.132 0.868 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.141 0.859 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.142 0.858 47 H 0.110 0.890 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.476 4.195 -8.167 20.632 hybrid contribution 0.793 -0.833 0.344 1.201 sum -17.683 3.362 -7.823 19.626 Atomic orbital electron populations 1.22472 0.95279 1.02663 1.03078 1.20991 0.92627 0.92995 0.83423 1.21736 1.02529 0.92811 1.02587 1.86610 1.77175 1.28929 1.43417 1.23787 0.97898 0.95377 1.00689 1.23027 0.86164 0.93200 0.99025 1.49301 1.12892 1.26365 1.47241 1.20437 0.88665 0.80190 0.78336 1.90478 1.65295 1.32131 1.51871 1.19681 0.86823 0.83301 0.82296 1.90761 1.62439 1.33549 1.52377 1.48424 1.10111 1.36139 1.35621 1.22657 0.98153 0.93452 0.90781 1.21961 0.98532 1.01182 0.95437 1.21663 0.92746 1.00322 1.00296 1.18946 0.94681 0.94398 0.89695 0.95239 1.21050 0.90396 1.16856 1.27604 0.92318 1.25061 0.99031 0.94948 0.95007 1.69876 1.34530 1.18652 1.28789 0.86633 0.85139 0.77842 0.78249 1.20243 1.21239 1.20275 1.22481 0.73862 1.02745 1.01944 1.23048 0.96103 0.82955 0.98479 0.91294 0.91536 0.92177 0.91347 0.91648 0.90983 0.77793 0.86802 0.89892 0.89881 0.85877 0.92214 0.92482 0.92083 0.93178 0.93035 0.92589 0.93389 0.85831 0.88980 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.95 8.68 37.16 0.32 -0.63 16 2 C 0.14 1.00 1.00 -90.62 -0.09 0.91 16 3 C -0.14 -1.00 8.83 37.15 0.33 -0.67 16 4 O -0.55 -4.51 11.63 -35.23 -0.41 -4.92 16 5 C -0.16 -1.33 3.35 -90.24 -0.30 -1.63 16 6 C 0.11 1.00 7.39 -8.50 -0.06 0.94 16 7 N -0.62 -8.73 3.69 -185.87 -0.69 -9.42 16 8 C 0.54 9.54 7.99 -11.59 -0.09 9.45 16 9 O -0.52 -9.54 13.96 5.49 0.08 -9.46 16 10 C 0.50 10.50 7.73 -11.58 -0.09 10.41 16 11 O -0.51 -12.09 14.75 5.50 0.08 -12.01 16 12 N -0.57 -12.28 2.97 -173.27 -0.52 -12.80 16 13 C 0.07 1.32 5.98 -3.71 -0.02 1.30 16 14 C -0.13 -2.38 6.09 -26.60 -0.16 -2.55 16 15 C -0.11 -2.34 5.10 -26.67 -0.14 -2.48 16 16 C 0.04 1.05 2.26 -91.65 -0.21 0.85 16 17 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 18 C -0.52 -14.17 8.56 -34.44 -0.29 -14.47 16 19 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 21 N -0.88 -25.50 11.39 55.43 0.63 -24.87 16 22 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C 0.11 2.69 5.41 -3.71 -0.02 2.67 16 27 C 0.12 1.41 6.99 -8.64 -0.06 1.35 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.28 7.64 -51.93 -0.40 -0.12 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.37 2.03 7.27 45.56 0.33 2.36 16 35 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.59 6.47 -51.93 -0.34 0.25 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.12 2.23 4.32 -54.76 -0.24 1.99 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.12 3.48 5.13 -51.93 -0.27 3.21 16 47 H 0.09 1.30 7.54 -51.93 -0.39 0.90 16 48 H 0.10 1.17 7.06 -51.93 -0.37 0.81 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -32.28 375.38 -8.29 -40.58 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.12 Total: 3.93 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -0.98 Total: 7.09 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.57 Total: -47.08 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.25 Total: -26.39 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.28 -8.29 -40.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327728876.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.359 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds