Wall clock time and date at job start Tue Mar 31 2020 15:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47263 * 2 1 4 4 O 1.42899 * 109.47030 * 239.99658 * 2 1 3 5 5 C 1.52997 * 109.46946 * 119.99939 * 2 1 3 6 6 C 1.53498 * 114.20786 * 65.20025 * 5 2 1 7 7 N 1.47067 * 87.98957 * 139.65378 * 6 5 2 8 8 C 1.34773 * 136.06471 * 152.84300 * 7 6 5 9 9 O 1.21353 * 119.99773 * 0.02562 * 8 7 6 10 10 C 1.49449 * 120.00439 * 180.02562 * 8 7 6 11 11 O 1.21350 * 119.99907 * 353.22331 * 10 8 7 12 12 N 1.34781 * 119.99930 * 173.21754 * 10 8 7 13 13 C 1.46927 * 120.63193 * 351.35322 * 12 10 8 14 14 C 1.53188 * 108.89223 * 233.55928 * 13 12 10 15 15 C 1.53071 * 109.29279 * 305.57622 * 14 13 12 16 16 C 1.53038 * 109.65984 * 61.15674 * 15 14 13 17 17 H 1.08995 * 109.50061 * 58.64999 * 16 15 14 18 18 C 1.50703 * 109.49946 * 178.74697 * 16 15 14 19 19 H 1.08007 * 119.99807 * 359.83936 * 18 16 15 20 20 C 1.37871 * 120.00220 * 179.83567 * 18 16 15 21 21 N 1.31517 * 119.99875 * 0.02562 * 20 18 16 22 22 Si 1.86804 * 120.00313 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.46985 * 60.00178 * 22 20 18 24 24 H 1.48499 * 109.47266 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46712 * 300.00248 * 22 20 18 26 26 C 1.46922 * 120.62884 * 171.37199 * 12 10 8 27 27 C 1.47075 * 87.88182 * 333.10451 * 7 6 5 28 28 H 1.08993 * 109.47228 * 300.00023 * 1 2 3 29 29 H 1.09002 * 109.46802 * 60.00258 * 1 2 3 30 30 H 1.09002 * 109.47049 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47416 * 175.52587 * 3 2 1 32 32 H 1.09003 * 109.47268 * 295.52844 * 3 2 1 33 33 H 1.09001 * 109.47101 * 55.52451 * 3 2 1 34 34 H 0.96696 * 114.00649 * 300.00336 * 4 2 1 35 35 H 1.09001 * 113.41823 * 292.00271 * 5 2 1 36 36 H 1.09005 * 113.46766 * 24.87726 * 6 5 2 37 37 H 1.09000 * 113.46968 * 254.43173 * 6 5 2 38 38 H 1.09007 * 109.58318 * 353.41791 * 13 12 10 39 39 H 1.08997 * 109.58576 * 113.69640 * 13 12 10 40 40 H 1.08999 * 109.50378 * 65.38848 * 14 13 12 41 41 H 1.09007 * 109.49724 * 185.48595 * 14 13 12 42 42 H 1.09002 * 109.35103 * 301.12890 * 15 14 13 43 43 H 1.09000 * 109.44568 * 181.23955 * 15 14 13 44 44 H 0.97000 * 119.99900 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.58694 * 246.15712 * 26 12 10 46 46 H 1.09003 * 109.58690 * 6.44166 * 26 12 10 47 47 H 1.08993 * 113.46750 * 141.68066 * 27 7 6 48 48 H 1.09001 * 113.46473 * 272.11178 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2492 6 6 1.6961 -2.2164 1.2972 7 7 3.0442 -2.4563 1.8338 8 6 3.6246 -3.3831 2.6215 9 8 2.9671 -4.3038 3.0607 10 6 5.0777 -3.2772 2.9543 11 8 5.7625 -2.4304 2.4190 12 7 5.6275 -4.1222 3.8489 13 6 4.7830 -5.0244 4.6436 14 6 5.1062 -4.8272 6.1279 15 6 6.6097 -5.0130 6.3472 16 6 7.3810 -3.9673 5.5387 17 1 7.0717 -2.9686 5.8466 18 6 8.8591 -4.1338 5.7811 19 1 9.2133 -4.9064 6.4476 20 6 9.7591 -3.3000 5.1523 21 7 9.3277 -2.3589 4.3411 22 14 11.5912 -3.5068 5.4522 23 1 12.0107 -4.8683 5.0336 24 1 12.3392 -2.4939 4.6649 25 1 11.8801 -3.3221 6.8971 26 6 7.0827 -4.1582 4.0482 27 6 3.4791 -1.2358 1.1378 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1271 1.4435 0.0802 32 1 1.7436 1.9326 -0.9273 33 1 1.6127 1.9789 0.8472 34 1 1.7210 -1.5952 -1.2329 35 1 1.8311 -0.1848 2.1748 36 1 1.5360 -2.6568 0.3131 37 1 0.8996 -2.4563 2.0016 38 1 3.7327 -4.7941 4.4645 39 1 4.9840 -6.0574 4.3599 40 1 4.8176 -3.8213 6.4327 41 1 4.5568 -5.5590 6.7203 42 1 6.9016 -6.0115 6.0215 43 1 6.8393 -4.8950 7.4062 44 1 9.9609 -1.7720 3.8989 45 1 7.4731 -5.1208 3.7178 46 1 7.5501 -3.3579 3.4744 47 1 4.1956 -0.6435 1.7069 48 1 3.7988 -1.4123 0.1108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327728876.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:01 Heat of formation + Delta-G solvation = -93.926254 kcal Electronic energy + Delta-G solvation = -28814.021072 eV Core-core repulsion = 24869.834963 eV Total energy + Delta-G solvation = -3944.186109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.27570 -41.09843 -39.36194 -38.52879 -37.57334 -35.25207 -33.54190 -33.34598 -31.61680 -30.68944 -28.54732 -27.60887 -26.84664 -26.63001 -24.70304 -23.58847 -22.86157 -21.21568 -20.71374 -19.95107 -18.71969 -18.47106 -17.96389 -17.87909 -17.24693 -16.75340 -16.42544 -16.29767 -15.87944 -15.52000 -15.30553 -14.92847 -14.69267 -14.58708 -14.39887 -14.37371 -13.96291 -13.87041 -13.53475 -13.34718 -13.27790 -13.04912 -12.97557 -12.86421 -12.77482 -12.54811 -12.47329 -12.30249 -12.18725 -12.07452 -11.75892 -11.61947 -11.31464 -11.17278 -11.01173 -10.89568 -10.55601 -10.25400 -9.84752 -9.56637 -8.12377 -6.29770 0.31558 1.12901 1.41336 1.42969 1.51030 2.08112 2.30986 2.42003 2.98280 3.14256 3.18672 3.38860 3.74905 3.79521 4.03552 4.09040 4.13806 4.16894 4.29502 4.35225 4.41339 4.44999 4.53948 4.56391 4.68885 4.72513 4.77706 4.84746 4.90536 4.97278 4.98085 5.03444 5.09466 5.17555 5.18370 5.20320 5.27801 5.37310 5.41711 5.44312 5.55177 5.81799 5.92013 6.20454 6.26105 6.33563 6.61024 6.81609 6.85885 6.97468 7.40169 8.91091 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017700 B = 0.003108 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.515626 B = 9005.636014 C =10186.577013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.146 3.854 3 C -0.144 4.144 4 O -0.571 6.571 5 C -0.134 4.134 6 C 0.110 3.890 7 N -0.623 5.623 8 C 0.541 3.459 9 O -0.528 6.528 10 C 0.486 3.514 11 O -0.552 6.552 12 N -0.578 5.578 13 C 0.072 3.928 14 C -0.125 4.125 15 C -0.106 4.106 16 C 0.041 3.959 17 H -0.012 1.012 18 C -0.537 4.537 19 H 0.063 0.937 20 C 0.011 3.989 21 N -0.914 5.914 22 Si 0.960 3.040 23 H -0.268 1.268 24 H -0.287 1.287 25 H -0.269 1.269 26 C 0.122 3.878 27 C 0.107 3.893 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.385 0.615 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.135 0.865 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.261 0.739 45 H 0.044 0.956 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.287 2.770 -7.993 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 C -0.201 4.201 4 O -0.380 6.380 5 C -0.154 4.154 6 C -0.010 4.010 7 N -0.357 5.357 8 C 0.325 3.675 9 O -0.408 6.408 10 C 0.269 3.731 11 O -0.430 6.430 12 N -0.310 5.310 13 C -0.049 4.049 14 C -0.163 4.163 15 C -0.144 4.144 16 C 0.021 3.979 17 H 0.006 0.994 18 C -0.576 4.576 19 H 0.082 0.918 20 C -0.189 4.189 21 N -0.552 5.552 22 Si 0.785 3.215 23 H -0.193 1.193 24 H -0.213 1.213 25 H -0.194 1.194 26 C 0.001 3.999 27 C -0.015 4.015 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.236 0.764 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.152 0.848 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.121 0.879 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.103 0.897 47 H 0.082 0.918 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.830 3.269 -8.125 22.596 hybrid contribution 1.492 -0.465 0.266 1.586 sum -19.337 2.803 -7.859 21.061 Atomic orbital electron populations 1.22429 0.93204 1.03708 1.03658 1.21005 0.93966 0.92367 0.82200 1.21800 1.01495 0.93387 1.03438 1.86603 1.77662 1.30004 1.43689 1.23708 0.94347 0.95343 1.01967 1.23402 0.83724 0.93361 1.00509 1.49446 1.15231 1.25289 1.45700 1.19530 0.86860 0.81237 0.79828 1.90448 1.64711 1.32641 1.52955 1.20464 0.88786 0.82369 0.81492 1.90732 1.63934 1.34886 1.53482 1.48465 1.09186 1.36947 1.36392 1.22877 0.98051 0.93403 0.90570 1.21930 0.96674 1.01992 0.95670 1.21557 0.94294 0.98943 0.99620 1.18878 0.94610 0.93684 0.90682 0.99360 1.21455 0.91782 1.16835 1.27484 0.91847 1.25899 1.03657 0.94611 0.94698 1.70067 1.35786 1.19565 1.29808 0.85583 0.79584 0.77987 0.78353 1.19253 1.21300 1.19380 1.21952 0.76132 1.00827 1.01017 1.23207 0.98185 0.82311 0.97785 0.90354 0.91376 0.90927 0.93160 0.91415 0.89457 0.76441 0.86070 0.86937 0.88442 0.84805 0.90902 0.93390 0.87950 0.92370 0.92574 0.92989 0.93762 0.89743 0.91790 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 8.68 71.98 0.62 -0.65 16 2 C 0.15 1.74 1.00 -10.80 -0.01 1.73 16 3 C -0.14 -1.88 8.83 71.98 0.64 -1.25 16 4 O -0.57 -8.15 11.63 -148.98 -1.73 -9.88 16 5 C -0.13 -2.00 3.35 -10.55 -0.04 -2.04 16 6 C 0.11 1.73 7.39 83.18 0.61 2.34 16 7 N -0.62 -16.93 3.69 -860.34 -3.18 -20.10 16 8 C 0.54 19.05 7.99 87.27 0.70 19.75 16 9 O -0.53 -18.60 13.96 -3.26 -0.05 -18.65 16 10 C 0.49 21.26 7.73 87.27 0.67 21.93 16 11 O -0.55 -27.55 14.75 -3.25 -0.05 -27.60 16 12 N -0.58 -25.52 2.97 -820.48 -2.44 -27.96 16 13 C 0.07 2.57 5.98 86.36 0.52 3.09 16 14 C -0.12 -4.27 6.09 30.68 0.19 -4.08 16 15 C -0.11 -4.37 5.10 30.63 0.16 -4.21 16 16 C 0.04 2.11 2.26 -11.46 -0.03 2.09 16 17 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 18 C -0.54 -29.90 8.56 25.60 0.22 -29.68 16 19 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 20 C 0.01 0.62 5.30 84.65 0.45 1.07 16 21 N -0.91 -55.33 11.39 21.45 0.24 -55.09 16 22 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 C 0.12 6.29 5.41 86.36 0.47 6.76 16 27 C 0.11 2.60 6.99 83.09 0.58 3.18 16 28 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.38 7.64 -2.39 -0.02 0.36 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.39 3.14 7.27 -74.06 -0.54 2.60 16 35 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.11 1.16 6.47 -2.38 -0.02 1.15 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.14 4.63 4.32 -47.35 -0.20 4.42 16 39 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 42 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 45 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.08 5.06 5.13 -2.39 -0.01 5.05 16 47 H 0.06 1.92 7.54 -2.39 -0.02 1.90 16 48 H 0.10 2.42 7.06 -2.39 -0.02 2.41 16 Total: -1.00 -73.72 375.38 0.81 -72.91 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.23 Total: 20.03 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 5.75 Total: 20.03 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -5.37 Total: -103.15 kcal Atomic # 8 Polarization: -54.30 SS G_CDS: -1.83 Total: -56.13 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -73.72 0.81 -72.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327728876.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.019 kcal (2) G-P(sol) polarization free energy of solvation -73.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds