Wall clock time and date at job start Tue Mar 31 2020 13:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00473 * 2 1 4 4 H 1.48509 * 109.46925 * 264.90181 * 3 2 1 5 5 H 1.48501 * 109.46874 * 24.89888 * 3 2 1 6 6 H 1.48496 * 109.47140 * 144.90085 * 3 2 1 7 7 C 1.37880 * 119.99449 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00393 * 4.79238 * 7 2 1 9 9 C 1.50701 * 119.99885 * 184.79126 * 7 2 1 10 10 H 1.09003 * 109.52603 * 334.96384 * 9 7 2 11 11 C 1.53042 * 109.49988 * 214.88603 * 9 7 2 12 12 C 1.53070 * 109.66067 * 178.74743 * 11 9 7 13 13 C 1.53198 * 109.29631 * 61.15003 * 12 11 9 14 14 N 1.46925 * 108.89037 * 305.58079 * 13 12 11 15 15 C 1.34780 * 120.62628 * 233.51009 * 14 13 12 16 16 O 1.21349 * 119.99600 * 171.28394 * 15 14 13 17 17 C 1.49446 * 120.00174 * 351.28523 * 15 14 13 18 18 O 1.21345 * 120.00063 * 353.61565 * 17 15 14 19 19 N 1.34776 * 119.99955 * 173.61808 * 17 15 14 20 20 C 1.46501 * 120.00258 * 180.02562 * 19 17 15 21 21 C 1.52999 * 109.47394 * 180.02562 * 20 19 17 22 22 O 1.42899 * 109.47108 * 64.99598 * 21 20 19 23 23 C 1.42904 * 113.99973 * 180.02562 * 22 21 20 24 24 C 1.53784 * 113.61118 * 247.50274 * 23 22 21 25 25 C 1.53784 * 87.07659 * 220.01714 * 24 23 22 26 26 C 1.53774 * 113.61838 * 150.00052 * 23 22 21 27 27 C 1.46924 * 118.73969 * 53.53793 * 14 13 12 28 28 H 0.97003 * 119.99579 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46048 * 298.70307 * 11 9 7 30 30 H 1.09000 * 109.46154 * 58.67406 * 11 9 7 31 31 H 1.09004 * 109.39030 * 301.27616 * 12 11 9 32 32 H 1.09000 * 109.62857 * 181.17006 * 12 11 9 33 33 H 1.08994 * 109.58762 * 185.71915 * 13 12 11 34 34 H 1.09003 * 109.58470 * 65.43500 * 13 12 11 35 35 H 0.97004 * 119.99740 * 0.02562 * 19 17 15 36 36 H 1.09004 * 109.46709 * 299.99884 * 20 19 17 37 37 H 1.08993 * 109.47043 * 59.99596 * 20 19 17 38 38 H 1.09000 * 109.47112 * 184.99885 * 21 20 19 39 39 H 1.09000 * 109.46475 * 304.99972 * 21 20 19 40 40 H 1.09003 * 112.84919 * 18.80424 * 23 22 21 41 41 H 1.09000 * 113.61548 * 334.55698 * 24 23 22 42 42 H 1.08993 * 113.61665 * 105.47043 * 24 23 22 43 43 H 1.09003 * 113.61179 * 270.88346 * 25 24 23 44 44 H 1.09002 * 113.61665 * 139.98490 * 25 24 23 45 45 H 1.09002 * 113.61517 * 254.52972 * 26 23 22 46 46 H 1.09004 * 113.61325 * 25.34454 * 26 23 22 47 47 H 1.08993 * 109.58924 * 66.17758 * 27 14 13 48 48 H 1.09006 * 109.58589 * 186.45867 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6046 1.9841 -1.3946 5 1 1.3970 2.6813 0.5895 6 1 3.4888 1.4735 0.8050 7 6 2.0045 -1.1941 -0.0005 8 1 1.4673 -2.1278 -0.0791 9 6 3.5075 -1.1966 0.1085 10 1 3.9010 -0.2488 -0.2591 11 6 4.0784 -2.3449 -0.7267 12 6 5.6068 -2.3318 -0.6437 13 6 6.0364 -2.5295 0.8135 14 7 5.3753 -1.5153 1.6460 15 6 6.0961 -0.7200 2.4612 16 8 5.5638 0.2149 3.0228 17 6 7.5506 -0.9894 2.6735 18 8 8.0572 -1.9883 2.2064 19 7 8.2998 -0.1229 3.3837 20 6 9.7259 -0.3867 3.5914 21 6 10.3374 0.7419 4.4239 22 8 9.7580 0.7380 5.7302 23 6 10.2625 1.7595 6.5929 24 6 11.0895 1.2178 7.7709 25 6 10.4047 2.2857 8.6402 26 6 9.2416 2.2454 7.6350 27 6 3.9136 -1.3850 1.5735 28 1 -0.4850 0.8401 0.0004 29 1 3.7041 -3.2940 -0.3431 30 1 3.7705 -2.2264 -1.7656 31 1 5.9808 -1.3744 -1.0065 32 1 6.0137 -3.1371 -1.2553 33 1 7.1178 -2.4199 0.8937 34 1 5.7440 -3.5246 1.1488 35 1 7.8948 0.6754 3.7574 36 1 9.8473 -1.3332 4.1182 37 1 10.2296 -0.4408 2.6263 38 1 11.4141 0.5923 4.5035 39 1 10.1381 1.6986 3.9409 40 1 10.7513 2.5686 6.0501 41 1 10.8328 0.1963 8.0514 42 1 12.1628 1.3698 7.6573 43 1 10.9334 3.2388 8.6581 44 1 10.1347 1.9315 9.6351 45 1 8.8232 3.2269 7.4118 46 1 8.4789 1.5053 7.8772 47 1 3.4463 -2.2867 1.9691 48 1 3.5943 -0.5217 2.1573 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328015368.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:06 Heat of formation + Delta-G solvation = -88.232001 kcal Electronic energy + Delta-G solvation = -27895.974686 eV Core-core repulsion = 23952.035498 eV Total energy + Delta-G solvation = -3943.939188 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66733 -39.67436 -38.54237 -37.08516 -36.78743 -34.74285 -33.20597 -31.84469 -30.46417 -29.94103 -26.16687 -26.01194 -25.15154 -25.03147 -23.58362 -22.03266 -21.80273 -20.28256 -20.01627 -18.97433 -17.70923 -17.44894 -16.95531 -16.68372 -16.07815 -15.87614 -15.77843 -15.23711 -14.97070 -14.43731 -14.35202 -14.09149 -13.79393 -13.50590 -13.18240 -13.07159 -12.93381 -12.81909 -12.57824 -12.49096 -12.44528 -12.18555 -11.90858 -11.63466 -11.39648 -11.12030 -11.09507 -10.80823 -10.73704 -10.69190 -10.43030 -10.05426 -9.84509 -9.70292 -9.55123 -9.36231 -9.19530 -8.75829 -8.57137 -8.10327 -6.11494 -4.12447 1.63663 2.54267 3.22247 3.31723 3.40778 3.44675 3.49532 3.77552 4.16933 4.20309 4.37586 4.42972 4.45476 4.54151 4.60566 4.75210 4.85417 4.97477 5.20129 5.22637 5.31185 5.39728 5.43896 5.47524 5.49917 5.53465 5.56930 5.72960 5.74663 5.89145 5.96232 6.05822 6.20966 6.26670 6.40309 6.51192 6.59114 6.67313 6.80381 6.84075 6.86867 7.11692 7.27053 7.35383 7.67760 7.75163 7.90938 8.30310 8.48866 8.93884 9.51783 11.00843 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.002788 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.277439 B =10041.709862 C =11274.045761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.075 3.925 3 Si 0.871 3.129 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.258 1.258 7 C -0.514 4.514 8 H 0.076 0.924 9 C 0.007 3.993 10 H 0.035 0.965 11 C -0.106 4.106 12 C -0.137 4.137 13 C 0.072 3.928 14 N -0.572 5.572 15 C 0.496 3.504 16 O -0.530 6.530 17 C 0.511 3.489 18 O -0.517 6.517 19 N -0.698 5.698 20 C 0.120 3.880 21 C 0.047 3.953 22 O -0.370 6.370 23 C 0.060 3.940 24 C -0.156 4.156 25 C -0.143 4.143 26 C -0.139 4.139 27 C 0.109 3.891 28 H 0.265 0.735 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.129 0.871 34 H 0.064 0.936 35 H 0.416 0.584 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.067 0.933 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.034 2.406 11.305 27.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.698 3.302 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.182 1.182 7 C -0.552 4.552 8 H 0.094 0.906 9 C -0.013 4.013 10 H 0.053 0.947 11 C -0.144 4.144 12 C -0.175 4.175 13 C -0.050 4.050 14 N -0.304 5.304 15 C 0.277 3.723 16 O -0.407 6.407 17 C 0.293 3.707 18 O -0.395 6.395 19 N -0.352 5.352 20 C -0.003 4.003 21 C -0.030 4.030 22 O -0.289 6.289 23 C 0.003 3.997 24 C -0.194 4.194 25 C -0.180 4.180 26 C -0.176 4.176 27 C -0.012 4.012 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.146 0.854 34 H 0.082 0.918 35 H 0.252 0.748 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.111 0.889 47 H 0.086 0.914 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 24.790 2.163 11.330 27.342 hybrid contribution 0.300 1.429 0.060 1.462 sum 25.091 3.592 11.390 27.788 Atomic orbital electron populations 1.69905 1.06344 1.27182 1.49748 1.25085 0.94709 0.99075 0.93896 0.86924 0.80834 0.83617 0.78807 1.20272 1.21477 1.18176 1.20891 0.88543 0.94707 1.51017 0.90591 1.19457 0.96924 0.94931 0.89952 0.94710 1.21609 0.92110 0.99869 1.00842 1.22029 0.98568 1.01358 0.95581 1.22740 1.01369 0.90830 0.90029 1.48433 1.09233 1.34115 1.38604 1.19909 0.86949 0.83712 0.81732 1.90746 1.71900 1.28635 1.49449 1.20542 0.88105 0.83278 0.78783 1.90479 1.73741 1.27123 1.48109 1.45741 1.09643 1.26345 1.53498 1.21486 0.80542 0.98802 0.99471 1.22825 0.97585 0.98562 0.84003 1.88034 1.64859 1.53369 1.22657 1.23791 0.96119 0.90381 0.89441 1.23478 0.99386 1.00136 0.96407 1.22659 0.97684 0.99305 0.98375 1.23224 0.97420 1.01998 0.94977 1.22643 0.74481 1.02346 1.01681 0.92515 0.92726 0.92234 0.92476 0.91590 0.85430 0.91753 0.74757 0.90052 0.89424 0.91335 0.92261 0.89497 0.89156 0.91405 0.90031 0.90688 0.90886 0.88917 0.91430 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.96 55.43 0.77 -26.42 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 3 Si 0.87 22.08 26.99 -169.99 -4.59 17.50 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.26 -6.56 6.82 56.52 0.39 -6.18 16 7 C -0.51 -14.14 8.86 -34.44 -0.31 -14.44 16 8 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 9 C 0.01 0.16 1.91 -91.65 -0.18 -0.01 16 10 H 0.03 0.85 5.30 -51.93 -0.28 0.58 16 11 C -0.11 -2.09 5.14 -26.67 -0.14 -2.23 16 12 C -0.14 -2.25 6.09 -26.59 -0.16 -2.41 16 13 C 0.07 1.19 5.98 -3.71 -0.02 1.17 16 14 N -0.57 -11.05 2.97 -173.28 -0.52 -11.57 16 15 C 0.50 9.35 7.73 -11.59 -0.09 9.26 16 16 O -0.53 -11.29 15.93 5.50 0.09 -11.21 16 17 C 0.51 7.93 7.74 -11.59 -0.09 7.84 16 18 O -0.52 -8.29 13.18 5.50 0.07 -8.22 16 19 N -0.70 -8.61 5.49 -60.73 -0.33 -8.94 16 20 C 0.12 1.09 6.06 -4.04 -0.02 1.07 16 21 C 0.05 0.34 5.91 37.16 0.22 0.56 16 22 O -0.37 -3.44 10.30 -35.23 -0.36 -3.81 16 23 C 0.06 0.44 4.31 -25.92 -0.11 0.33 16 24 C -0.16 -1.00 7.91 -25.92 -0.21 -1.21 16 25 C -0.14 -0.84 8.08 -25.92 -0.21 -1.05 16 26 C -0.14 -1.02 7.91 -25.92 -0.21 -1.23 16 27 C 0.11 2.40 5.71 -3.71 -0.02 2.38 16 28 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.13 2.04 4.31 -54.82 -0.24 1.81 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.42 5.08 7.96 -40.82 -0.32 4.76 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.50 7.87 -51.93 -0.41 0.09 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 48 H 0.08 2.04 7.01 -51.93 -0.36 1.68 16 LS Contribution 383.77 15.07 5.78 5.78 Total: -1.00 -32.54 383.77 -8.67 -41.21 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -7.95 Total: 3.56 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.64 Total: 2.10 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.08 Total: -46.92 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.20 Total: -23.23 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.59 Total: 17.50 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.54 -8.67 -41.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328015368.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.023 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds