Wall clock time and date at job start Tue Mar 31 2020 13:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00473 * 2 1 4 4 H 1.48509 * 109.46925 * 264.90181 * 3 2 1 5 5 H 1.48501 * 109.46874 * 24.89888 * 3 2 1 6 6 H 1.48496 * 109.47140 * 144.90085 * 3 2 1 7 7 C 1.37880 * 119.99449 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00393 * 4.79238 * 7 2 1 9 9 C 1.50701 * 119.99885 * 184.79126 * 7 2 1 10 10 H 1.09003 * 109.52603 * 334.96384 * 9 7 2 11 11 C 1.53042 * 109.49988 * 214.88603 * 9 7 2 12 12 C 1.53070 * 109.66067 * 178.74743 * 11 9 7 13 13 C 1.53198 * 109.29631 * 61.15003 * 12 11 9 14 14 N 1.46925 * 108.89037 * 305.58079 * 13 12 11 15 15 C 1.34780 * 120.62628 * 233.51009 * 14 13 12 16 16 O 1.21349 * 119.99600 * 171.28394 * 15 14 13 17 17 C 1.49446 * 120.00174 * 351.28523 * 15 14 13 18 18 O 1.21345 * 120.00063 * 353.61565 * 17 15 14 19 19 N 1.34776 * 119.99955 * 173.61808 * 17 15 14 20 20 C 1.46501 * 120.00258 * 180.02562 * 19 17 15 21 21 C 1.52999 * 109.47394 * 180.02562 * 20 19 17 22 22 O 1.42899 * 109.47108 * 64.99598 * 21 20 19 23 23 C 1.42904 * 113.99973 * 180.02562 * 22 21 20 24 24 C 1.53784 * 113.61118 * 247.50274 * 23 22 21 25 25 C 1.53784 * 87.07659 * 220.01714 * 24 23 22 26 26 C 1.53774 * 113.61838 * 150.00052 * 23 22 21 27 27 C 1.46924 * 118.73969 * 53.53793 * 14 13 12 28 28 H 0.97003 * 119.99579 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46048 * 298.70307 * 11 9 7 30 30 H 1.09000 * 109.46154 * 58.67406 * 11 9 7 31 31 H 1.09004 * 109.39030 * 301.27616 * 12 11 9 32 32 H 1.09000 * 109.62857 * 181.17006 * 12 11 9 33 33 H 1.08994 * 109.58762 * 185.71915 * 13 12 11 34 34 H 1.09003 * 109.58470 * 65.43500 * 13 12 11 35 35 H 0.97004 * 119.99740 * 0.02562 * 19 17 15 36 36 H 1.09004 * 109.46709 * 299.99884 * 20 19 17 37 37 H 1.08993 * 109.47043 * 59.99596 * 20 19 17 38 38 H 1.09000 * 109.47112 * 184.99885 * 21 20 19 39 39 H 1.09000 * 109.46475 * 304.99972 * 21 20 19 40 40 H 1.09003 * 112.84919 * 18.80424 * 23 22 21 41 41 H 1.09000 * 113.61548 * 334.55698 * 24 23 22 42 42 H 1.08993 * 113.61665 * 105.47043 * 24 23 22 43 43 H 1.09003 * 113.61179 * 270.88346 * 25 24 23 44 44 H 1.09002 * 113.61665 * 139.98490 * 25 24 23 45 45 H 1.09002 * 113.61517 * 254.52972 * 26 23 22 46 46 H 1.09004 * 113.61325 * 25.34454 * 26 23 22 47 47 H 1.08993 * 109.58924 * 66.17758 * 27 14 13 48 48 H 1.09006 * 109.58589 * 186.45867 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6046 1.9841 -1.3946 5 1 1.3970 2.6813 0.5895 6 1 3.4888 1.4735 0.8050 7 6 2.0045 -1.1941 -0.0005 8 1 1.4673 -2.1278 -0.0791 9 6 3.5075 -1.1966 0.1085 10 1 3.9010 -0.2488 -0.2591 11 6 4.0784 -2.3449 -0.7267 12 6 5.6068 -2.3318 -0.6437 13 6 6.0364 -2.5295 0.8135 14 7 5.3753 -1.5153 1.6460 15 6 6.0961 -0.7200 2.4612 16 8 5.5638 0.2149 3.0228 17 6 7.5506 -0.9894 2.6735 18 8 8.0572 -1.9883 2.2064 19 7 8.2998 -0.1229 3.3837 20 6 9.7259 -0.3867 3.5914 21 6 10.3374 0.7419 4.4239 22 8 9.7580 0.7380 5.7302 23 6 10.2625 1.7595 6.5929 24 6 11.0895 1.2178 7.7709 25 6 10.4047 2.2857 8.6402 26 6 9.2416 2.2454 7.6350 27 6 3.9136 -1.3850 1.5735 28 1 -0.4850 0.8401 0.0004 29 1 3.7041 -3.2940 -0.3431 30 1 3.7705 -2.2264 -1.7656 31 1 5.9808 -1.3744 -1.0065 32 1 6.0137 -3.1371 -1.2553 33 1 7.1178 -2.4199 0.8937 34 1 5.7440 -3.5246 1.1488 35 1 7.8948 0.6754 3.7574 36 1 9.8473 -1.3332 4.1182 37 1 10.2296 -0.4408 2.6263 38 1 11.4141 0.5923 4.5035 39 1 10.1381 1.6986 3.9409 40 1 10.7513 2.5686 6.0501 41 1 10.8328 0.1963 8.0514 42 1 12.1628 1.3698 7.6573 43 1 10.9334 3.2388 8.6581 44 1 10.1347 1.9315 9.6351 45 1 8.8232 3.2269 7.4118 46 1 8.4789 1.5053 7.8772 47 1 3.4463 -2.2867 1.9691 48 1 3.5943 -0.5217 2.1573 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328015368.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:05 Heat of formation + Delta-G solvation = -110.777662 kcal Electronic energy + Delta-G solvation = -27896.952339 eV Core-core repulsion = 23952.035498 eV Total energy + Delta-G solvation = -3944.916841 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.00237 -40.29674 -39.82329 -38.62358 -37.51399 -35.77528 -35.05592 -33.56947 -32.19377 -30.75587 -27.70083 -26.88663 -26.55422 -25.62967 -24.68143 -23.42979 -23.02264 -21.62257 -20.67157 -20.47024 -19.20310 -18.51152 -18.31771 -18.05353 -17.16545 -17.11302 -16.49862 -16.38916 -15.97539 -15.96081 -15.61150 -15.36869 -15.05962 -14.98766 -14.75814 -14.43306 -14.17344 -13.84853 -13.77774 -13.56098 -13.37235 -13.20958 -13.04666 -12.97652 -12.70631 -12.44957 -12.33380 -12.00932 -11.94451 -11.71672 -11.65608 -11.62203 -11.34073 -11.29386 -11.11277 -10.74670 -10.44397 -10.35371 -10.11770 -9.69760 -8.35022 -6.38218 0.29890 1.25585 1.29979 1.34053 1.44395 2.06984 2.29622 2.47695 2.69778 3.02557 3.27901 3.66168 3.69727 3.84938 3.95942 4.02517 4.03520 4.14715 4.17812 4.22331 4.38589 4.45287 4.48096 4.53406 4.62074 4.68898 4.75712 4.80880 4.83820 4.85313 4.90291 4.97953 5.03493 5.04320 5.06628 5.19600 5.23683 5.26376 5.38015 5.40599 5.54957 5.60303 5.65757 5.95830 6.25171 6.31516 6.31743 6.64813 6.71982 6.89389 7.28559 8.81091 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.002788 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.277439 B =10041.709862 C =11274.045761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.022 3.978 3 Si 0.932 3.068 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.511 4.511 8 H 0.044 0.956 9 C 0.006 3.994 10 H 0.025 0.975 11 C -0.103 4.103 12 C -0.128 4.128 13 C 0.072 3.928 14 N -0.577 5.577 15 C 0.488 3.512 16 O -0.561 6.561 17 C 0.518 3.482 18 O -0.521 6.521 19 N -0.685 5.685 20 C 0.117 3.883 21 C 0.049 3.951 22 O -0.397 6.397 23 C 0.057 3.943 24 C -0.155 4.155 25 C -0.136 4.136 26 C -0.149 4.149 27 C 0.119 3.881 28 H 0.267 0.733 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.142 0.858 34 H 0.076 0.924 35 H 0.416 0.584 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.791 2.778 11.161 31.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.549 4.549 8 H 0.062 0.938 9 C -0.014 4.014 10 H 0.044 0.956 11 C -0.141 4.141 12 C -0.166 4.166 13 C -0.048 4.048 14 N -0.309 5.309 15 C 0.271 3.729 16 O -0.441 6.441 17 C 0.299 3.701 18 O -0.400 6.400 19 N -0.337 5.337 20 C -0.005 4.005 21 C -0.028 4.028 22 O -0.317 6.317 23 C -0.001 4.001 24 C -0.192 4.192 25 C -0.173 4.173 26 C -0.187 4.187 27 C -0.003 4.003 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.159 0.841 34 H 0.094 0.906 35 H 0.253 0.747 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.115 0.885 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 28.601 2.527 11.184 30.814 hybrid contribution -0.862 1.251 0.163 1.528 sum 27.739 3.778 11.348 30.208 Atomic orbital electron populations 1.70025 1.07869 1.28047 1.52025 1.25820 0.95339 1.02396 0.94106 0.85953 0.79185 0.79835 0.79263 1.18762 1.21363 1.18662 1.21156 0.90927 0.93290 1.49552 0.93774 1.19419 0.94220 0.96206 0.91529 0.95646 1.21516 0.94754 0.98115 0.99739 1.21986 0.95603 1.02847 0.96120 1.22965 1.01812 0.90511 0.89553 1.48433 1.08049 1.34981 1.39433 1.20585 0.88630 0.82845 0.80811 1.90724 1.73007 1.29938 1.50429 1.19797 0.86525 0.83912 0.79847 1.90464 1.73205 1.27374 1.48966 1.45807 1.10858 1.25322 1.51711 1.21774 0.78371 0.99527 1.00808 1.22922 0.98675 0.98200 0.82962 1.88001 1.65759 1.54225 1.23697 1.23969 0.96053 0.90585 0.89469 1.23438 1.00182 0.99511 0.96093 1.22670 0.96814 0.99906 0.97936 1.23264 0.97662 1.01574 0.96197 1.22138 0.76925 1.01151 1.00108 0.92404 0.92501 0.92490 0.92565 0.87883 0.84102 0.90615 0.74682 0.90509 0.87623 0.88669 0.91176 0.87603 0.90459 0.89920 0.88492 0.90692 0.90651 0.90869 0.91378 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.85 13.96 21.45 0.30 -58.55 16 2 C 0.02 1.28 5.47 84.65 0.46 1.75 16 3 Si 0.93 46.55 26.99 68.60 1.85 48.40 16 4 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.26 -13.18 6.82 99.48 0.68 -12.50 16 7 C -0.51 -28.88 8.86 25.60 0.23 -28.65 16 8 H 0.04 2.72 8.06 -2.91 -0.02 2.69 16 9 C 0.01 0.28 1.91 -11.46 -0.02 0.25 16 10 H 0.03 1.23 5.30 -2.39 -0.01 1.22 16 11 C -0.10 -3.93 5.14 30.63 0.16 -3.77 16 12 C -0.13 -3.80 6.09 30.68 0.19 -3.61 16 13 C 0.07 2.19 5.98 86.36 0.52 2.71 16 14 N -0.58 -21.74 2.97 -820.49 -2.44 -24.18 16 15 C 0.49 18.04 7.73 87.27 0.67 18.72 16 16 O -0.56 -24.01 15.93 -3.24 -0.05 -24.06 16 17 C 0.52 15.11 7.74 87.27 0.68 15.79 16 18 O -0.52 -15.32 13.18 -3.23 -0.04 -15.36 16 19 N -0.68 -15.52 5.49 -464.42 -2.55 -18.07 16 20 C 0.12 1.80 6.06 86.38 0.52 2.32 16 21 C 0.05 0.55 5.91 71.98 0.43 0.98 16 22 O -0.40 -6.68 10.30 -148.98 -1.53 -8.22 16 23 C 0.06 0.72 4.31 31.12 0.13 0.85 16 24 C -0.15 -1.71 7.91 31.12 0.25 -1.46 16 25 C -0.14 -1.38 8.08 31.12 0.25 -1.13 16 26 C -0.15 -2.09 7.91 31.12 0.25 -1.84 16 27 C 0.12 5.29 5.71 86.36 0.49 5.78 16 28 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.14 4.05 4.31 -48.05 -0.21 3.84 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.42 9.58 7.96 -92.71 -0.74 8.84 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.11 0.91 7.87 -2.39 -0.02 0.90 16 41 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 48 H 0.06 2.78 7.01 -2.38 -0.02 2.77 16 Total: -1.00 -72.05 383.77 0.72 -71.33 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -0.01 Total: 20.02 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 5.20 Total: 8.68 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -4.69 Total: -100.80 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -1.63 Total: -47.63 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.85 Total: 48.40 kcal Total: -72.05 0.72 -71.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328015368.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.448 kcal (2) G-P(sol) polarization free energy of solvation -72.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds