Wall clock time and date at job start Tue Mar 31 2020 14:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.86934 * 2 1 4 4 N 1.46500 * 109.47132 * 59.30007 * 3 2 1 5 5 C 1.34775 * 120.00203 * 179.97438 * 4 3 2 6 6 O 1.21352 * 119.99676 * 0.02562 * 5 4 3 7 7 C 1.49446 * 119.99866 * 179.97438 * 5 4 3 8 8 O 1.21341 * 120.00548 * 353.48238 * 7 5 4 9 9 N 1.34783 * 119.99661 * 173.47951 * 7 5 4 10 10 C 1.46929 * 120.63211 * 353.02884 * 9 7 5 11 11 C 1.53190 * 108.77494 * 126.36562 * 10 9 7 12 12 C 1.53042 * 109.31188 * 54.63771 * 11 10 9 13 13 C 1.53037 * 109.53696 * 298.63037 * 12 11 10 14 14 H 1.09010 * 109.49393 * 301.38314 * 13 12 11 15 15 C 1.50697 * 109.49724 * 181.32171 * 13 12 11 16 16 H 1.08003 * 120.00127 * 359.97438 * 15 13 12 17 17 C 1.37882 * 119.99809 * 180.02562 * 15 13 12 18 18 N 1.31515 * 119.99549 * 179.97438 * 17 15 13 19 19 Si 1.86795 * 120.00155 * 359.97438 * 17 15 13 20 20 H 1.48493 * 109.47498 * 89.99890 * 19 17 15 21 21 H 1.48500 * 109.46907 * 210.00257 * 19 17 15 22 22 H 1.48497 * 109.47084 * 329.99908 * 19 17 15 23 23 C 1.46923 * 120.63017 * 172.99835 * 9 7 5 24 24 C 1.54101 * 109.87692 * 238.99428 * 2 1 3 25 25 C 1.55143 * 104.03198 * 242.40978 * 24 2 1 26 26 C 1.55000 * 102.09131 * 20.99753 * 25 24 2 27 27 O 1.43742 * 109.87736 * 121.00899 * 2 1 3 28 28 H 1.08998 * 109.47019 * 60.69910 * 1 2 3 29 29 H 1.09007 * 109.47124 * 180.69955 * 1 2 3 30 30 H 1.08999 * 109.46704 * 300.69908 * 1 2 3 31 31 H 1.08995 * 109.47504 * 299.29806 * 3 2 1 32 32 H 1.09001 * 109.46992 * 179.29414 * 3 2 1 33 33 H 0.97007 * 119.99793 * 0.02562 * 4 3 2 34 34 H 1.08997 * 109.58182 * 6.57761 * 10 9 7 35 35 H 1.09003 * 109.58019 * 246.15524 * 10 9 7 36 36 H 1.09002 * 109.49474 * 174.58462 * 11 10 9 37 37 H 1.08997 * 109.50234 * 294.64901 * 11 10 9 38 38 H 1.08996 * 109.46057 * 58.65091 * 12 11 10 39 39 H 1.09001 * 109.45823 * 178.61085 * 12 11 10 40 40 H 0.97009 * 119.99635 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.58617 * 113.84655 * 23 9 7 42 42 H 1.09000 * 109.58595 * 353.42468 * 23 9 7 43 43 H 1.09001 * 110.48852 * 1.12942 * 24 2 1 44 44 H 1.08995 * 110.48755 * 123.78173 * 24 2 1 45 45 H 1.09001 * 110.97702 * 262.76472 * 25 24 2 46 46 H 1.09003 * 110.82781 * 139.16481 * 25 24 2 47 47 H 1.09001 * 110.61493 * 204.39042 * 26 25 24 48 48 H 1.08997 * 110.74927 * 81.45692 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 7 1.5528 2.1378 1.1876 5 6 1.8853 3.4266 1.3997 6 8 2.5962 4.0082 0.6066 7 6 1.3776 4.1397 2.6110 8 8 0.5729 3.5990 3.3406 9 7 1.8137 5.3835 2.8929 10 6 2.8974 5.9924 2.1095 11 6 2.4233 7.3515 1.5854 12 6 1.9396 8.2060 2.7593 13 6 0.7588 7.5138 3.4439 14 1 -0.0444 7.3656 2.7219 15 6 0.2626 8.3712 4.5794 16 1 0.7415 9.3156 4.7923 17 6 -0.8023 7.9497 5.3473 18 7 -1.2350 8.6978 6.3386 19 14 -1.6302 6.3161 4.9795 20 1 -0.9650 5.2384 5.7548 21 1 -3.0629 6.3899 5.3631 22 1 -1.5209 6.0215 3.5282 23 6 1.2139 6.1564 3.9890 24 6 2.0540 -0.7465 -1.2421 25 6 2.8375 -1.9500 -0.6550 26 6 2.2315 -2.0696 0.7666 27 8 2.0188 -0.6964 1.1586 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3634 -1.0276 0.0125 30 1 -0.3633 0.5247 0.8837 31 1 1.7006 1.9516 -0.8962 32 1 3.1400 1.4313 0.0127 33 1 0.9849 1.6728 1.8218 34 1 3.1497 5.3447 1.2699 35 1 3.7733 6.1304 2.7434 36 1 3.2491 7.8562 1.0840 37 1 1.6051 7.2044 0.8804 38 1 2.7515 8.3320 3.4755 39 1 1.6247 9.1827 2.3920 40 1 -1.9844 8.4014 6.8786 41 1 1.9526 6.3079 4.7761 42 1 0.3556 5.6170 4.3895 43 1 1.2237 -1.0929 -1.8575 44 1 2.7176 -0.1045 -1.8213 45 1 3.9048 -1.7344 -0.6061 46 1 2.6508 -2.8540 -1.2348 47 1 2.9331 -2.5576 1.4431 48 1 1.2863 -2.6117 0.7391 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328359544.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:14 Heat of formation + Delta-G solvation = -123.737801 kcal Electronic energy + Delta-G solvation = -28805.141441 eV Core-core repulsion = 24859.662606 eV Total energy + Delta-G solvation = -3945.478835 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.15091 -40.95120 -39.80472 -38.72454 -36.39280 -35.20071 -33.67516 -33.38231 -32.27540 -32.25316 -28.66797 -27.61938 -27.01114 -26.36157 -23.95937 -23.60512 -22.65420 -21.65028 -21.23513 -20.50927 -19.13409 -18.71616 -18.24508 -17.50756 -17.17301 -16.84840 -16.74994 -16.37382 -16.22665 -15.81391 -15.57616 -15.36744 -15.05752 -14.88930 -14.76816 -14.63818 -14.25122 -14.05982 -13.75173 -13.63601 -13.46906 -13.26542 -13.04796 -12.78870 -12.61107 -12.54254 -12.35485 -12.14099 -12.04267 -11.98308 -11.71078 -11.63033 -11.57900 -11.34006 -11.09938 -10.82911 -10.69308 -10.42069 -10.09378 -9.75589 -8.40356 -6.42828 0.22246 1.20602 1.22085 1.29313 1.36616 2.01643 2.19394 2.40537 2.82140 2.95908 3.21190 3.46052 3.66706 3.79001 3.95627 4.02732 4.12390 4.13153 4.16732 4.36334 4.38081 4.47108 4.48917 4.54008 4.57012 4.64277 4.70840 4.75794 4.80610 4.84448 4.89794 4.91280 4.96849 5.06297 5.09119 5.17264 5.20451 5.25096 5.27478 5.37705 5.49208 5.57295 5.63391 5.89162 5.96394 6.22091 6.25066 6.59694 6.66919 6.82553 7.22459 8.75692 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.003174 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.720146 B = 8818.739488 C = 9760.472064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.088 3.912 3 C 0.124 3.876 4 N -0.681 5.681 5 C 0.521 3.479 6 O -0.515 6.515 7 C 0.487 3.513 8 O -0.564 6.564 9 N -0.574 5.574 10 C 0.049 3.951 11 C -0.121 4.121 12 C -0.100 4.100 13 C 0.005 3.995 14 H 0.016 0.984 15 C -0.512 4.512 16 H 0.052 0.948 17 C 0.028 3.972 18 N -0.936 5.936 19 Si 0.934 3.066 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.267 1.267 23 C 0.104 3.896 24 C -0.139 4.139 25 C -0.149 4.149 26 C 0.037 3.963 27 O -0.393 6.393 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.416 0.584 34 H 0.160 0.840 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.268 0.732 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.770 -23.363 -19.673 32.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.048 3.952 3 C 0.001 3.999 4 N -0.333 5.333 5 C 0.302 3.698 6 O -0.394 6.394 7 C 0.270 3.730 8 O -0.443 6.443 9 N -0.306 5.306 10 C -0.071 4.071 11 C -0.159 4.159 12 C -0.137 4.137 13 C -0.014 4.014 14 H 0.035 0.965 15 C -0.550 4.550 16 H 0.070 0.930 17 C -0.171 4.171 18 N -0.576 5.576 19 Si 0.763 3.237 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.192 1.192 23 C -0.018 4.018 24 C -0.177 4.177 25 C -0.187 4.187 26 C -0.039 4.039 27 O -0.313 6.313 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.253 0.747 34 H 0.176 0.824 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.096 0.904 46 H 0.118 0.882 47 H 0.115 0.885 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.772 -23.133 -19.518 31.805 hybrid contribution -1.229 -0.520 1.035 1.688 sum 8.543 -23.653 -18.483 31.210 Atomic orbital electron populations 1.22313 0.93906 1.03419 1.02901 1.22460 0.94471 0.90921 0.87359 1.21957 1.00186 0.90461 0.87259 1.45804 1.50665 1.10041 1.26806 1.19752 0.81019 0.83271 0.85719 1.90283 1.37582 1.64728 1.46760 1.20590 0.82782 0.83022 0.86622 1.90718 1.35931 1.66666 1.51031 1.48400 1.35840 1.13467 1.32860 1.23429 0.87517 0.97471 0.98640 1.21857 1.01790 0.94941 0.97306 1.21425 0.96907 0.98424 0.96967 1.19426 0.95541 0.91327 0.95152 0.96544 1.21267 1.14569 1.05466 1.13720 0.93002 1.25650 0.97321 0.99410 0.94700 1.69988 1.27690 1.39481 1.20399 0.86103 0.77505 0.80758 0.79351 1.20251 1.21629 1.19242 1.22362 0.97505 0.92993 0.88892 1.23041 1.01522 0.97127 0.95996 1.23185 1.00590 0.99217 0.95694 1.23759 1.00653 0.82968 0.96542 1.88946 1.86105 1.22420 1.33800 0.89848 0.90737 0.93410 0.88259 0.90025 0.74666 0.82371 0.90573 0.87861 0.92706 0.92181 0.92280 0.92252 0.90990 0.92783 0.88305 0.88953 0.90370 0.88156 0.88504 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 8.44 71.98 0.61 -1.67 16 2 C 0.09 1.22 0.82 -10.42 -0.01 1.21 16 3 C 0.12 2.14 4.62 86.38 0.40 2.54 16 4 N -0.68 -16.61 5.17 -464.42 -2.40 -19.01 16 5 C 0.52 15.79 7.78 87.27 0.68 16.47 16 6 O -0.51 -15.35 13.10 -3.25 -0.04 -15.40 16 7 C 0.49 18.71 7.74 87.27 0.68 19.38 16 8 O -0.56 -24.92 15.94 -3.22 -0.05 -24.97 16 9 N -0.57 -22.46 2.97 -820.50 -2.44 -24.90 16 10 C 0.05 1.53 6.27 86.36 0.54 2.07 16 11 C -0.12 -3.71 6.08 30.67 0.19 -3.53 16 12 C -0.10 -3.83 5.11 30.62 0.16 -3.67 16 13 C 0.01 0.25 1.84 -11.47 -0.02 0.22 16 14 H 0.02 0.84 7.20 -2.38 -0.02 0.82 16 15 C -0.51 -29.38 9.14 25.60 0.23 -29.14 16 16 H 0.05 3.19 7.99 -2.91 -0.02 3.17 16 17 C 0.03 1.68 5.45 84.66 0.46 2.14 16 18 N -0.94 -59.02 13.96 21.45 0.30 -58.72 16 19 Si 0.93 49.38 24.32 68.60 1.67 51.05 16 20 H -0.28 -14.67 6.92 99.48 0.69 -13.98 16 21 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 22 H -0.27 -14.03 6.53 99.48 0.65 -13.38 16 23 C 0.10 4.83 5.09 86.36 0.44 5.27 16 24 C -0.14 -1.11 6.30 31.70 0.20 -0.91 16 25 C -0.15 -1.09 7.16 32.01 0.23 -0.86 16 26 C 0.04 0.42 7.67 72.67 0.56 0.97 16 27 O -0.39 -7.14 10.70 -148.98 -1.59 -8.73 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.05 0.84 6.83 -2.39 -0.02 0.83 16 31 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.42 10.58 6.71 -92.70 -0.62 9.96 16 34 H 0.16 4.67 3.78 -78.78 -0.30 4.37 16 35 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.27 15.91 8.31 -92.70 -0.77 15.14 16 41 H 0.07 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.05 2.78 2.39 -2.39 -0.01 2.77 16 43 H 0.10 0.51 7.70 -2.39 -0.02 0.49 16 44 H 0.09 0.60 7.70 -2.39 -0.02 0.58 16 45 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -73.19 368.81 0.76 -72.43 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -0.02 Total: 17.76 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 5.34 Total: 10.50 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -4.54 Total: -102.63 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: -1.69 Total: -49.10 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 1.67 Total: 51.05 kcal Total: -73.19 0.76 -72.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328359544.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.310 kcal (2) G-P(sol) polarization free energy of solvation -73.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds