Wall clock time and date at job start Tue Mar 31 2020 14:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99751 * 2 1 4 4 C 1.52998 * 109.47316 * 269.99971 * 3 2 1 5 5 C 1.52998 * 112.99976 * 50.33528 * 4 3 2 6 6 C 1.54034 * 113.81887 * 278.50934 * 4 3 2 7 7 O 1.44438 * 85.42915 * 223.23558 * 6 4 3 8 8 C 1.44181 * 93.37773 * 24.08584 * 7 6 4 9 9 C 1.34776 * 120.00312 * 180.02562 * 2 1 3 10 10 O 1.21346 * 120.00263 * 174.98705 * 9 2 1 11 11 C 1.49449 * 119.99737 * 355.25250 * 9 2 1 12 12 O 1.21355 * 119.99865 * 84.86831 * 11 9 2 13 13 N 1.34775 * 120.00532 * 264.87235 * 11 9 2 14 14 C 1.46934 * 120.62531 * 354.86225 * 13 11 9 15 15 C 1.53191 * 108.77118 * 126.37166 * 14 13 11 16 16 C 1.53042 * 109.31377 * 54.63432 * 15 14 13 17 17 C 1.53039 * 109.53702 * 298.63157 * 16 15 14 18 18 H 1.08995 * 109.49847 * 301.41338 * 17 16 15 19 19 C 1.50702 * 109.49547 * 181.31701 * 17 16 15 20 20 H 1.07998 * 120.00272 * 359.97438 * 19 17 16 21 21 C 1.37881 * 119.99843 * 180.02562 * 19 17 16 22 22 N 1.31515 * 119.99768 * 179.97438 * 21 19 17 23 23 Si 1.86801 * 119.99998 * 0.02562 * 21 19 17 24 24 H 1.48495 * 109.46996 * 90.00044 * 23 21 19 25 25 H 1.48497 * 109.46944 * 209.99985 * 23 21 19 26 26 H 1.48503 * 109.47012 * 329.99895 * 23 21 19 27 27 C 1.46924 * 120.63572 * 174.58660 * 13 11 9 28 28 H 1.09004 * 109.47215 * 274.70750 * 1 2 3 29 29 H 1.09004 * 109.47398 * 34.70955 * 1 2 3 30 30 H 1.09000 * 109.46846 * 154.71063 * 1 2 3 31 31 H 1.09003 * 109.47106 * 29.99942 * 3 2 1 32 32 H 1.09001 * 109.46863 * 150.00248 * 3 2 1 33 33 H 1.09004 * 109.47363 * 59.99586 * 5 4 3 34 34 H 1.09002 * 109.47158 * 180.02562 * 5 4 3 35 35 H 1.09010 * 109.47078 * 300.00001 * 5 4 3 36 36 H 1.09005 * 113.86421 * 337.34509 * 6 4 3 37 37 H 1.08997 * 113.86651 * 109.04412 * 6 4 3 38 38 H 1.09004 * 113.86708 * 221.76927 * 8 7 6 39 39 H 1.08998 * 113.86289 * 90.06707 * 8 7 6 40 40 H 1.09001 * 109.58706 * 246.15313 * 14 13 11 41 41 H 1.08993 * 109.58919 * 6.44275 * 14 13 11 42 42 H 1.09000 * 109.50012 * 174.58221 * 15 14 13 43 43 H 1.08997 * 109.50123 * 294.68077 * 15 14 13 44 44 H 1.09000 * 109.45934 * 58.65323 * 16 15 14 45 45 H 1.09002 * 109.45953 * 178.62653 * 16 15 14 46 46 H 0.97003 * 119.99557 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.58378 * 353.41591 * 27 13 11 48 48 H 1.09000 * 109.59009 * 113.84077 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 1.1894 1.6911 -2.3058 6 6 3.6648 1.0231 -2.0984 7 8 3.9870 2.3356 -2.6081 8 6 3.2658 3.0132 -1.5595 9 6 2.1389 -1.1672 -0.0005 10 8 3.3489 -1.1691 -0.0923 11 6 1.3955 -2.4593 0.1060 12 8 0.9374 -2.9796 -0.8900 13 7 1.2338 -3.0466 1.3082 14 6 1.8768 -2.4894 2.5061 15 6 0.8084 -2.2686 3.5815 16 6 0.0559 -3.5790 3.8240 17 6 -0.6411 -4.0153 2.5333 18 1 -1.3278 -3.2337 2.2085 19 6 -1.4082 -5.2884 2.7816 20 1 -1.3995 -5.7418 3.7617 21 6 -2.1204 -5.8751 1.7570 22 7 -2.7894 -6.9865 1.9735 23 14 -2.1337 -5.0922 0.0610 24 1 -1.0093 -5.6343 -0.7432 25 1 -3.4194 -5.3991 -0.6157 26 1 -1.9832 -3.6208 0.1939 27 6 0.4063 -4.2527 1.4469 28 1 -0.3634 0.0843 1.0242 29 1 -0.3634 0.8448 -0.5852 30 1 -0.3633 -0.9292 -0.4390 31 1 1.6083 2.0284 0.5138 32 1 3.1498 1.1384 0.5138 33 1 0.4473 2.3659 -1.8791 34 1 1.4357 2.0139 -3.3173 35 1 0.7854 0.6791 -2.3359 36 1 4.3921 0.6363 -1.3845 37 1 3.3981 0.3018 -2.8709 38 1 2.6834 3.8672 -1.9055 39 1 3.8711 3.2357 -0.6807 40 1 2.6283 -3.1872 2.8755 41 1 2.3505 -1.5396 2.2582 42 1 1.2851 -1.9463 4.5073 43 1 0.1080 -1.5034 3.2469 44 1 0.7606 -4.3502 4.1348 45 1 -0.6887 -3.4308 4.6062 46 1 -3.2901 -7.3994 1.2526 47 1 -0.0920 -4.4647 0.5010 48 1 1.0355 -5.0972 1.7282 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329318821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:07 Heat of formation + Delta-G solvation = -93.184000 kcal Electronic energy + Delta-G solvation = -29797.146891 eV Core-core repulsion = 25852.992968 eV Total energy + Delta-G solvation = -3944.153923 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.36997 -41.53630 -39.99119 -38.62265 -37.11068 -35.38757 -33.74803 -33.24762 -32.35394 -29.31187 -28.29763 -27.56910 -27.05303 -26.90763 -26.20203 -23.68611 -23.59301 -21.14397 -20.12486 -19.72931 -19.02567 -18.80893 -18.26069 -17.86118 -17.33792 -16.96512 -16.86081 -16.48339 -15.99435 -15.88935 -15.48339 -15.47243 -15.10596 -14.89641 -14.63961 -14.54800 -14.26211 -14.15103 -13.85559 -13.84427 -13.49558 -13.20048 -13.05772 -12.99393 -12.98435 -12.66039 -12.47749 -12.36769 -12.14070 -11.85241 -11.81999 -11.61421 -11.56211 -11.25653 -11.07270 -10.84720 -10.75747 -10.59387 -9.87580 -9.83338 -8.38706 -6.41160 0.89861 0.90582 1.22915 1.31503 1.36484 1.40628 2.17481 2.21874 2.72344 2.96499 2.99129 3.17498 3.68986 3.82304 3.93605 4.00911 4.04355 4.06159 4.10205 4.36294 4.38711 4.41317 4.41862 4.45289 4.54171 4.56143 4.64925 4.67006 4.74529 4.77439 4.79987 4.82063 4.91389 4.92963 5.03976 5.10913 5.18836 5.19206 5.22539 5.26722 5.27140 5.50849 5.60012 5.65586 5.84217 6.08206 6.25683 6.57327 6.62902 6.70467 7.24440 8.77337 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020679 B = 0.003799 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.704371 B = 7368.130312 C = 7937.092401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.583 5.583 3 C 0.122 3.878 4 C -0.142 4.142 5 C -0.128 4.128 6 C 0.041 3.959 7 O -0.410 6.410 8 C 0.054 3.946 9 C 0.527 3.473 10 O -0.533 6.533 11 C 0.499 3.501 12 O -0.567 6.567 13 N -0.586 5.586 14 C 0.103 3.897 15 C -0.121 4.121 16 C -0.099 4.099 17 C 0.008 3.992 18 H 0.028 0.972 19 C -0.510 4.510 20 H 0.052 0.948 21 C 0.028 3.972 22 N -0.938 5.938 23 Si 0.930 3.070 24 H -0.288 1.288 25 H -0.293 1.293 26 H -0.253 1.253 27 C 0.107 3.893 28 H 0.086 0.914 29 H 0.113 0.887 30 H 0.045 0.955 31 H 0.132 0.868 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.267 0.733 47 H 0.051 0.949 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.374 24.621 -0.079 26.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.316 5.316 3 C 0.001 3.999 4 C -0.143 4.143 5 C -0.185 4.185 6 C -0.036 4.036 7 O -0.330 6.330 8 C -0.022 4.022 9 C 0.309 3.691 10 O -0.409 6.409 11 C 0.283 3.717 12 O -0.447 6.447 13 N -0.318 5.318 14 C -0.018 4.018 15 C -0.159 4.159 16 C -0.137 4.137 17 C -0.011 4.011 18 H 0.046 0.954 19 C -0.549 4.549 20 H 0.070 0.930 21 C -0.171 4.171 22 N -0.578 5.578 23 Si 0.759 3.241 24 H -0.215 1.215 25 H -0.220 1.220 26 H -0.177 1.177 27 C -0.015 4.015 28 H 0.105 0.895 29 H 0.132 0.868 30 H 0.064 0.936 31 H 0.150 0.850 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.128 0.872 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.802 24.322 -0.920 26.239 hybrid contribution -0.414 -1.136 -1.243 1.734 sum 9.388 23.186 -2.163 25.108 Atomic orbital electron populations 1.22268 0.77288 1.04029 1.04480 1.47808 1.08267 1.04876 1.70603 1.21950 0.98819 0.83641 0.95528 1.24077 0.96748 0.96635 0.96847 1.21627 0.95482 1.02215 0.99166 1.24098 0.95809 0.86441 0.97243 1.89688 1.77408 1.18864 1.46992 1.24213 0.91890 0.95025 0.91095 1.19872 0.87360 0.84631 0.77248 1.90754 1.13471 1.86610 1.50073 1.20837 0.80027 0.86917 0.83959 1.90777 1.50620 1.66128 1.37126 1.48506 1.47710 1.27945 1.07679 1.22104 0.95896 0.99587 0.84200 1.21927 0.97387 0.97588 0.98990 1.21400 0.98908 0.96838 0.96532 1.19343 0.92617 0.95656 0.93504 0.95398 1.21300 1.28033 1.08181 0.97337 0.92996 1.25649 0.94917 0.94960 1.01540 1.69987 1.33424 1.20187 1.34164 0.86167 0.76022 0.80579 0.81288 1.21525 1.22023 1.17706 1.22276 0.93291 0.85651 1.00286 0.89512 0.86840 0.93633 0.84990 0.89076 0.88815 0.92526 0.93428 0.89882 0.91730 0.86925 0.88031 0.89658 0.88841 0.87223 0.90968 0.92475 0.91681 0.92388 0.93080 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.08 9.28 127.77 1.19 2.26 16 2 N -0.58 -11.58 2.44 -848.35 -2.07 -13.64 16 3 C 0.12 1.56 4.96 86.38 0.43 1.99 16 4 C -0.14 -2.14 1.21 -51.49 -0.06 -2.21 16 5 C -0.13 -1.86 7.64 71.98 0.55 -1.31 16 6 C 0.04 0.92 7.57 72.29 0.55 1.47 16 7 O -0.41 -9.16 12.38 -148.98 -1.84 -11.00 16 8 C 0.05 0.67 8.37 72.29 0.60 1.28 16 9 C 0.53 15.27 5.45 87.27 0.48 15.74 16 10 O -0.53 -16.97 15.00 -3.24 -0.05 -17.02 16 11 C 0.50 18.37 5.82 87.27 0.51 18.87 16 12 O -0.57 -25.75 16.12 -3.26 -0.05 -25.80 16 13 N -0.59 -20.44 2.98 -821.31 -2.45 -22.89 16 14 C 0.10 2.56 6.36 86.36 0.55 3.11 16 15 C -0.12 -2.71 6.08 30.67 0.19 -2.53 16 16 C -0.10 -3.20 5.11 30.62 0.16 -3.05 16 17 C 0.01 0.36 1.83 -11.61 -0.02 0.34 16 18 H 0.03 1.22 7.20 -2.39 -0.02 1.20 16 19 C -0.51 -27.42 9.15 25.60 0.23 -27.19 16 20 H 0.05 3.02 7.99 -2.91 -0.02 3.00 16 21 C 0.03 1.61 5.45 84.66 0.46 2.07 16 22 N -0.94 -57.51 13.96 21.45 0.30 -57.21 16 23 Si 0.93 47.20 24.32 68.60 1.67 48.86 16 24 H -0.29 -15.24 6.92 99.48 0.69 -14.55 16 25 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 26 H -0.25 -12.08 6.53 99.48 0.65 -11.44 16 27 C 0.11 4.56 5.07 86.22 0.44 5.00 16 28 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.11 1.26 6.18 -2.38 -0.01 1.24 16 30 H 0.04 1.17 6.51 -2.39 -0.02 1.16 16 31 H 0.13 0.67 8.07 -2.39 -0.02 0.65 16 32 H 0.09 1.27 7.34 -2.39 -0.02 1.25 16 33 H 0.09 0.80 7.74 -2.38 -0.02 0.78 16 34 H 0.06 0.92 8.09 -2.39 -0.02 0.91 16 35 H 0.05 0.90 6.66 -2.38 -0.02 0.88 16 36 H 0.08 2.01 7.12 -2.38 -0.02 1.99 16 37 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 38 H 0.11 0.92 8.10 -2.39 -0.02 0.90 16 39 H 0.10 0.86 8.10 -2.39 -0.02 0.84 16 40 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.09 1.96 6.29 -2.39 -0.02 1.95 16 42 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 44 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 47 H 0.05 2.50 2.35 -2.39 -0.01 2.50 16 48 H 0.07 2.87 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -76.62 368.20 2.63 -73.99 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.88 Total: 8.86 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 6.24 Total: 15.86 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -4.21 Total: -93.75 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -1.94 Total: -53.83 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.67 Total: 48.86 kcal Total: -76.62 2.63 -73.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329318821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.198 kcal (2) G-P(sol) polarization free energy of solvation -76.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds