Wall clock time and date at job start Tue Mar 31 2020 14:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 110.05532 * 2 1 4 4 C 1.54265 * 110.03618 * 238.58277 * 2 1 3 5 5 C 1.54884 * 104.19520 * 217.10756 * 4 2 1 6 6 C 1.54887 * 102.75175 * 37.93956 * 5 4 2 7 7 C 1.53879 * 110.03192 * 121.41474 * 2 1 3 8 8 H 1.08998 * 110.07128 * 238.59193 * 7 2 1 9 9 N 1.46501 * 110.03143 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00165 * 203.61730 * 9 7 2 11 11 O 1.21348 * 119.99615 * 0.02562 * 10 9 7 12 12 C 1.49440 * 120.00114 * 180.02562 * 10 9 7 13 13 O 1.21348 * 120.00271 * 0.02562 * 12 10 9 14 14 N 1.34776 * 120.00114 * 179.97438 * 12 10 9 15 15 C 1.47430 * 125.64821 * 359.97438 * 14 12 10 16 16 C 1.54911 * 104.83276 * 155.90964 * 15 14 12 17 17 C 1.55155 * 101.58061 * 37.00611 * 16 15 14 18 18 O 1.42903 * 110.71967 * 82.86525 * 17 16 15 19 19 C 1.50703 * 110.72202 * 205.95229 * 17 16 15 20 20 H 1.08004 * 119.99703 * 357.56819 * 19 17 16 21 21 C 1.37871 * 120.00137 * 177.56076 * 19 17 16 22 22 N 1.31517 * 119.99912 * 0.02562 * 21 19 17 23 23 Si 1.86797 * 120.00189 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47284 * 89.99965 * 23 21 19 25 25 H 1.48499 * 109.47675 * 210.00237 * 23 21 19 26 26 H 1.48507 * 109.47183 * 330.00228 * 23 21 19 27 27 C 1.47494 * 125.59418 * 179.97438 * 14 12 10 28 28 H 1.09000 * 109.47211 * 298.58280 * 1 2 3 29 29 H 1.09003 * 109.47253 * 58.58950 * 1 2 3 30 30 H 1.09004 * 109.47381 * 178.58352 * 1 2 3 31 31 H 1.08996 * 109.46911 * 181.41801 * 3 2 1 32 32 H 1.08998 * 109.46638 * 301.41264 * 3 2 1 33 33 H 1.08997 * 109.47250 * 61.41552 * 3 2 1 34 34 H 1.08995 * 110.49038 * 98.42451 * 4 2 1 35 35 H 1.09002 * 110.59484 * 335.83869 * 4 2 1 36 36 H 1.09004 * 110.75575 * 279.62074 * 5 4 2 37 37 H 1.09010 * 110.91665 * 156.33328 * 5 4 2 38 38 H 1.09000 * 110.48549 * 203.38039 * 6 5 4 39 39 H 1.09005 * 110.48752 * 80.73890 * 6 5 4 40 40 H 0.96998 * 119.99670 * 23.62796 * 9 7 2 41 41 H 1.08994 * 110.36592 * 37.07266 * 15 14 12 42 42 H 1.08993 * 110.36160 * 274.74750 * 15 14 12 43 43 H 1.09001 * 111.00398 * 278.93368 * 16 15 14 44 44 H 1.08994 * 111.03980 * 155.09731 * 16 15 14 45 45 H 0.96700 * 114.00311 * 182.44028 * 18 17 16 46 46 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 47 47 H 1.09003 * 110.02897 * 61.64738 * 27 14 12 48 48 H 1.08997 * 109.96165 * 300.33405 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 3.3136 -1.5007 -0.7190 6 6 2.8874 -1.9406 0.7036 7 6 2.0571 -0.7535 1.2338 8 1 2.6864 -0.0958 1.8332 9 7 0.9358 -1.2445 2.0388 10 6 1.1086 -1.4980 3.3512 11 8 2.1928 -1.3191 3.8661 12 6 -0.0350 -1.9993 4.1722 13 8 -1.1191 -2.1787 3.6573 14 7 0.1379 -2.2533 5.4845 15 6 1.3956 -2.0820 6.2345 16 6 0.9560 -1.8912 7.7076 17 6 -0.2494 -2.8635 7.8014 18 8 0.1963 -4.1995 8.0432 19 6 -1.2089 -2.4211 8.8760 20 1 -0.9818 -1.5546 9.4793 21 6 -2.3767 -3.1225 9.0888 22 7 -2.6530 -4.1779 8.3544 23 14 -3.5664 -2.5737 10.4203 24 1 -4.5412 -1.6112 9.8472 25 1 -4.2919 -3.7547 10.9534 26 1 -2.8118 -1.9189 11.5191 27 6 -0.9008 -2.7487 6.4071 28 1 -0.3633 0.4917 0.9024 29 1 -0.3634 0.5356 -0.8771 30 1 -0.3634 -1.0274 -0.0254 31 1 3.1443 1.4262 -0.0254 32 1 1.6761 1.9622 -0.8771 33 1 1.7174 1.9472 0.9024 34 1 2.3297 -0.0537 -2.0254 35 1 1.3152 -1.4659 -1.5987 36 1 4.1710 -0.8290 -0.6750 37 1 3.5358 -2.3678 -1.3412 38 1 3.7637 -2.1036 1.3311 39 1 2.2771 -2.8426 0.6573 40 1 0.0692 -1.3873 1.6272 41 1 1.9308 -1.2007 5.8811 42 1 2.0194 -2.9704 6.1367 43 1 0.6441 -0.8632 7.8922 44 1 1.7498 -2.1856 8.3941 45 1 -0.5163 -4.8525 8.0732 46 1 -3.4744 -4.6715 8.5044 47 1 -1.2537 -3.7272 6.0813 48 1 -1.7326 -2.0454 6.4432 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329345018.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:26 Heat of formation + Delta-G solvation = -123.269596 kcal Electronic energy + Delta-G solvation = -28854.195864 eV Core-core repulsion = 24908.737332 eV Total energy + Delta-G solvation = -3945.458532 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.73915 -39.46447 -37.99362 -37.18512 -34.52860 -33.61404 -32.53423 -32.21760 -30.13795 -28.36092 -27.87922 -27.63943 -25.81452 -24.81089 -23.50759 -21.93976 -20.90622 -19.87630 -19.54543 -18.84772 -17.27034 -17.18788 -16.67663 -15.84721 -15.74246 -15.39950 -15.14631 -14.90723 -14.60388 -14.27080 -13.92323 -13.71630 -13.34281 -13.05597 -12.99255 -12.97668 -12.86356 -12.50314 -12.33545 -12.23901 -11.80706 -11.72842 -11.52761 -11.34755 -11.16473 -11.08332 -11.01750 -10.86930 -10.84452 -10.77255 -10.73253 -10.57197 -10.50795 -10.16915 -9.34668 -9.16967 -9.05993 -8.67633 -8.34342 -8.01195 -6.31293 -4.39714 1.80756 2.67561 3.20097 3.27625 3.30747 3.60646 3.90060 4.12293 4.25648 4.28641 4.49089 4.71985 4.95019 4.97250 5.00335 5.02358 5.05218 5.24028 5.36664 5.38701 5.47591 5.51083 5.57275 5.63526 5.65060 5.74423 5.82767 5.83442 5.89058 5.93794 5.98031 6.04536 6.06970 6.07837 6.25647 6.45128 6.52631 6.76184 6.80481 6.84030 7.18884 7.25590 7.35085 7.70883 7.89458 8.01967 8.05599 8.44760 8.64129 9.28542 9.38698 10.76576 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.025882 B = 0.002805 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.568965 B = 9979.127532 C =10332.850570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.076 4.076 3 C -0.138 4.138 4 C -0.115 4.115 5 C -0.123 4.123 6 C -0.136 4.136 7 C 0.147 3.853 8 H 0.095 0.905 9 N -0.703 5.703 10 C 0.510 3.490 11 O -0.518 6.518 12 C 0.505 3.495 13 O -0.540 6.540 14 N -0.576 5.576 15 C 0.100 3.900 16 C -0.121 4.121 17 C 0.247 3.753 18 O -0.584 6.584 19 C -0.536 4.536 20 H 0.068 0.932 21 C 0.070 3.930 22 N -0.896 5.896 23 Si 0.905 3.095 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.272 1.272 27 C 0.100 3.900 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.412 0.588 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.384 0.616 46 H 0.271 0.729 47 H 0.071 0.929 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.923 7.211 -17.608 21.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 C -0.195 4.195 4 C -0.152 4.152 5 C -0.161 4.161 6 C -0.175 4.175 7 C 0.043 3.957 8 H 0.113 0.887 9 N -0.360 5.360 10 C 0.291 3.709 11 O -0.393 6.393 12 C 0.287 3.713 13 O -0.419 6.419 14 N -0.308 5.308 15 C -0.023 4.023 16 C -0.159 4.159 17 C 0.207 3.793 18 O -0.393 6.393 19 C -0.575 4.575 20 H 0.086 0.914 21 C -0.133 4.133 22 N -0.535 5.535 23 Si 0.732 3.268 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.021 4.021 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.253 0.747 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.235 0.765 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.550 7.402 -17.563 21.317 hybrid contribution -1.747 -0.194 0.456 1.816 sum 7.803 7.208 -17.107 20.137 Atomic orbital electron populations 1.21938 0.94073 1.02062 1.02656 1.21418 0.96097 0.95843 0.94307 1.21893 1.01080 0.94431 1.02118 1.22489 0.97470 0.98859 0.96412 1.22449 0.97668 1.00041 0.95906 1.22811 1.00188 0.98154 0.96339 1.21783 0.87401 0.95379 0.91172 0.88724 1.46212 1.15285 1.66069 1.08407 1.20447 0.88937 0.78419 0.83090 1.90685 1.26611 1.50701 1.71336 1.19624 0.88247 0.80979 0.82447 1.90715 1.26512 1.53664 1.71057 1.48824 1.14768 1.60303 1.06892 1.22627 0.85591 1.02079 0.91968 1.22819 0.99210 0.99874 0.93953 1.19511 0.89476 0.81015 0.89325 1.86113 1.39450 1.18854 1.94863 1.21528 1.03973 1.13774 1.18186 0.91398 1.25086 0.97715 0.94513 0.96029 1.69641 1.26240 1.18188 1.39442 0.86377 0.80566 0.78289 0.81542 1.20418 1.20970 1.19653 1.23329 0.89670 0.99318 0.89742 0.91736 0.91866 0.92083 0.92252 0.92242 0.92344 0.91249 0.91205 0.91281 0.91278 0.90814 0.90970 0.74738 0.89506 0.91409 0.90520 0.90317 0.76533 0.91927 0.91079 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 7.04 37.16 0.26 -0.99 16 2 C -0.08 -0.63 0.94 -153.39 -0.14 -0.77 16 3 C -0.14 -1.02 8.15 37.16 0.30 -0.72 16 4 C -0.11 -0.81 5.90 -25.08 -0.15 -0.95 16 5 C -0.12 -0.91 6.91 -24.74 -0.17 -1.08 16 6 C -0.14 -1.35 6.53 -25.08 -0.16 -1.52 16 7 C 0.15 1.58 2.86 -66.81 -0.19 1.39 16 8 H 0.09 1.12 7.14 -51.93 -0.37 0.75 16 9 N -0.70 -9.29 4.50 -53.16 -0.24 -9.53 16 10 C 0.51 8.61 7.85 -11.59 -0.09 8.52 16 11 O -0.52 -9.30 13.46 5.50 0.07 -9.23 16 12 C 0.50 10.17 7.91 -11.59 -0.09 10.08 16 13 O -0.54 -11.80 16.80 5.50 0.09 -11.71 16 14 N -0.58 -12.28 3.34 -170.66 -0.57 -12.85 16 15 C 0.10 1.95 6.06 -2.53 -0.02 1.93 16 16 C -0.12 -2.49 6.22 -24.58 -0.15 -2.65 16 17 C 0.25 6.01 0.85 -89.94 -0.08 5.93 16 18 O -0.58 -14.77 13.07 -35.23 -0.46 -15.23 16 19 C -0.54 -13.95 8.11 -34.44 -0.28 -14.23 16 20 H 0.07 1.74 7.77 -52.48 -0.41 1.33 16 21 C 0.07 1.80 5.27 -17.82 -0.09 1.71 16 22 N -0.90 -23.59 10.96 55.43 0.61 -22.98 16 23 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 C 0.10 2.42 5.41 -2.81 -0.02 2.40 16 28 H 0.06 0.61 7.70 -51.93 -0.40 0.21 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.52 6.93 -51.93 -0.36 0.16 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.42 7.84 -51.93 -0.41 0.01 16 35 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 40 H 0.41 5.19 5.24 -40.82 -0.21 4.98 16 41 H 0.09 1.59 6.16 -51.93 -0.32 1.27 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.08 1.52 8.04 -51.93 -0.42 1.10 16 44 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 45 H 0.38 9.90 7.23 45.56 0.33 10.22 16 46 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 47 H 0.07 1.84 8.00 -51.93 -0.42 1.43 16 48 H 0.07 1.87 7.81 -51.93 -0.41 1.46 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -28.53 376.32 -8.07 -36.60 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -7.15 Total: 14.92 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -1.07 Total: 9.05 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -0.20 Total: -45.37 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -0.29 Total: -36.16 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.53 -8.07 -36.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329345018.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.671 kcal (2) G-P(sol) polarization free energy of solvation -28.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds