Wall clock time and date at job start Tue Mar 31 2020 14:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 110.05532 * 2 1 4 4 C 1.54265 * 110.03618 * 238.58277 * 2 1 3 5 5 C 1.54884 * 104.19520 * 217.10756 * 4 2 1 6 6 C 1.54887 * 102.75175 * 37.93956 * 5 4 2 7 7 C 1.53879 * 110.03192 * 121.41474 * 2 1 3 8 8 H 1.08998 * 110.07128 * 238.59193 * 7 2 1 9 9 N 1.46501 * 110.03143 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00165 * 203.61730 * 9 7 2 11 11 O 1.21348 * 119.99615 * 0.02562 * 10 9 7 12 12 C 1.49440 * 120.00114 * 180.02562 * 10 9 7 13 13 O 1.21348 * 120.00271 * 0.02562 * 12 10 9 14 14 N 1.34776 * 120.00114 * 179.97438 * 12 10 9 15 15 C 1.47430 * 125.64821 * 359.97438 * 14 12 10 16 16 C 1.54911 * 104.83276 * 155.90964 * 15 14 12 17 17 C 1.55155 * 101.58061 * 37.00611 * 16 15 14 18 18 O 1.42903 * 110.71967 * 82.86525 * 17 16 15 19 19 C 1.50703 * 110.72202 * 205.95229 * 17 16 15 20 20 H 1.08004 * 119.99703 * 357.56819 * 19 17 16 21 21 C 1.37871 * 120.00137 * 177.56076 * 19 17 16 22 22 N 1.31517 * 119.99912 * 0.02562 * 21 19 17 23 23 Si 1.86797 * 120.00189 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47284 * 89.99965 * 23 21 19 25 25 H 1.48499 * 109.47675 * 210.00237 * 23 21 19 26 26 H 1.48507 * 109.47183 * 330.00228 * 23 21 19 27 27 C 1.47494 * 125.59418 * 179.97438 * 14 12 10 28 28 H 1.09000 * 109.47211 * 298.58280 * 1 2 3 29 29 H 1.09003 * 109.47253 * 58.58950 * 1 2 3 30 30 H 1.09004 * 109.47381 * 178.58352 * 1 2 3 31 31 H 1.08996 * 109.46911 * 181.41801 * 3 2 1 32 32 H 1.08998 * 109.46638 * 301.41264 * 3 2 1 33 33 H 1.08997 * 109.47250 * 61.41552 * 3 2 1 34 34 H 1.08995 * 110.49038 * 98.42451 * 4 2 1 35 35 H 1.09002 * 110.59484 * 335.83869 * 4 2 1 36 36 H 1.09004 * 110.75575 * 279.62074 * 5 4 2 37 37 H 1.09010 * 110.91665 * 156.33328 * 5 4 2 38 38 H 1.09000 * 110.48549 * 203.38039 * 6 5 4 39 39 H 1.09005 * 110.48752 * 80.73890 * 6 5 4 40 40 H 0.96998 * 119.99670 * 23.62796 * 9 7 2 41 41 H 1.08994 * 110.36592 * 37.07266 * 15 14 12 42 42 H 1.08993 * 110.36160 * 274.74750 * 15 14 12 43 43 H 1.09001 * 111.00398 * 278.93368 * 16 15 14 44 44 H 1.08994 * 111.03980 * 155.09731 * 16 15 14 45 45 H 0.96700 * 114.00311 * 182.44028 * 18 17 16 46 46 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 47 47 H 1.09003 * 110.02897 * 61.64738 * 27 14 12 48 48 H 1.08997 * 109.96165 * 300.33405 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 3.3136 -1.5007 -0.7190 6 6 2.8874 -1.9406 0.7036 7 6 2.0571 -0.7535 1.2338 8 1 2.6864 -0.0958 1.8332 9 7 0.9358 -1.2445 2.0388 10 6 1.1086 -1.4980 3.3512 11 8 2.1928 -1.3191 3.8661 12 6 -0.0350 -1.9993 4.1722 13 8 -1.1191 -2.1787 3.6573 14 7 0.1379 -2.2533 5.4845 15 6 1.3956 -2.0820 6.2345 16 6 0.9560 -1.8912 7.7076 17 6 -0.2494 -2.8635 7.8014 18 8 0.1963 -4.1995 8.0432 19 6 -1.2089 -2.4211 8.8760 20 1 -0.9818 -1.5546 9.4793 21 6 -2.3767 -3.1225 9.0888 22 7 -2.6530 -4.1779 8.3544 23 14 -3.5664 -2.5737 10.4203 24 1 -4.5412 -1.6112 9.8472 25 1 -4.2919 -3.7547 10.9534 26 1 -2.8118 -1.9189 11.5191 27 6 -0.9008 -2.7487 6.4071 28 1 -0.3633 0.4917 0.9024 29 1 -0.3634 0.5356 -0.8771 30 1 -0.3634 -1.0274 -0.0254 31 1 3.1443 1.4262 -0.0254 32 1 1.6761 1.9622 -0.8771 33 1 1.7174 1.9472 0.9024 34 1 2.3297 -0.0537 -2.0254 35 1 1.3152 -1.4659 -1.5987 36 1 4.1710 -0.8290 -0.6750 37 1 3.5358 -2.3678 -1.3412 38 1 3.7637 -2.1036 1.3311 39 1 2.2771 -2.8426 0.6573 40 1 0.0692 -1.3873 1.6272 41 1 1.9308 -1.2007 5.8811 42 1 2.0194 -2.9704 6.1367 43 1 0.6441 -0.8632 7.8922 44 1 1.7498 -2.1856 8.3941 45 1 -0.5163 -4.8525 8.0732 46 1 -3.4744 -4.6715 8.5044 47 1 -1.2537 -3.7272 6.0813 48 1 -1.7326 -2.0454 6.4432 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329345018.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:25 Heat of formation + Delta-G solvation = -142.364845 kcal Electronic energy + Delta-G solvation = -28855.023896 eV Core-core repulsion = 24908.737332 eV Total energy + Delta-G solvation = -3946.286564 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.02495 -40.72353 -39.38927 -38.86892 -36.27577 -34.83466 -34.22355 -33.21018 -31.90261 -29.80651 -29.15039 -28.35775 -27.50383 -25.83417 -24.92033 -23.40122 -21.77608 -21.47988 -21.03470 -19.83029 -19.15709 -18.65230 -18.04886 -17.39324 -17.04459 -17.00409 -16.38135 -16.08852 -15.92768 -15.77797 -15.17097 -14.83237 -14.78542 -14.62728 -14.44825 -14.10949 -13.96099 -13.70944 -13.55388 -13.44877 -13.23259 -12.98620 -12.87979 -12.64533 -12.55295 -12.46049 -12.35436 -12.28498 -12.11532 -11.98439 -11.86317 -11.59764 -11.45183 -11.37874 -11.21531 -10.75637 -10.55618 -10.31067 -10.25589 -9.76943 -8.28476 -6.44275 0.30727 1.25012 1.42116 1.44162 1.53875 2.08640 2.36023 2.49479 2.97870 3.26570 3.43194 3.59798 3.76878 3.82158 4.03280 4.13497 4.26521 4.31888 4.33207 4.34203 4.36975 4.46285 4.58587 4.67797 4.71746 4.77455 4.81794 4.91703 4.94030 4.96671 5.02647 5.06405 5.08549 5.12035 5.18417 5.25296 5.29621 5.31667 5.36309 5.40796 5.43622 5.50187 5.71616 5.96870 6.05284 6.34054 6.59019 6.65528 6.89890 7.26461 7.34598 8.78064 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.025882 B = 0.002805 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.568965 B = 9979.127532 C =10332.850570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.071 4.071 3 C -0.136 4.136 4 C -0.110 4.110 5 C -0.116 4.116 6 C -0.138 4.138 7 C 0.141 3.859 8 H 0.085 0.915 9 N -0.685 5.685 10 C 0.516 3.484 11 O -0.529 6.529 12 C 0.500 3.500 13 O -0.562 6.562 14 N -0.584 5.584 15 C 0.109 3.891 16 C -0.114 4.114 17 C 0.234 3.766 18 O -0.588 6.588 19 C -0.557 4.557 20 H 0.068 0.932 21 C 0.027 3.973 22 N -0.916 5.916 23 Si 0.966 3.034 24 H -0.277 1.277 25 H -0.281 1.281 26 H -0.267 1.267 27 C 0.117 3.883 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.416 0.584 41 H 0.104 0.896 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.378 0.622 46 H 0.272 0.728 47 H 0.043 0.957 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.861 8.494 -19.050 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.072 4.072 3 C -0.194 4.194 4 C -0.147 4.147 5 C -0.153 4.153 6 C -0.176 4.176 7 C 0.037 3.963 8 H 0.103 0.897 9 N -0.340 5.340 10 C 0.297 3.703 11 O -0.406 6.406 12 C 0.283 3.717 13 O -0.442 6.442 14 N -0.316 5.316 15 C -0.012 4.012 16 C -0.152 4.152 17 C 0.193 3.807 18 O -0.396 6.396 19 C -0.595 4.595 20 H 0.087 0.913 21 C -0.174 4.174 22 N -0.555 5.555 23 Si 0.791 3.209 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.191 1.191 27 C -0.005 4.005 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.257 0.743 41 H 0.122 0.878 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.228 0.772 46 H 0.081 0.919 47 H 0.062 0.938 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.512 8.700 -19.045 23.429 hybrid contribution -2.052 -0.600 0.832 2.294 sum 8.460 8.100 -18.213 21.654 Atomic orbital electron populations 1.21953 0.94217 1.01941 1.02782 1.21428 0.95940 0.96305 0.93524 1.21892 1.01560 0.93618 1.02304 1.22486 0.97152 0.99048 0.96038 1.22440 0.98185 1.00697 0.94019 1.22797 0.99430 0.97358 0.98038 1.22086 0.86564 0.95944 0.91683 0.89659 1.46258 1.16344 1.64313 1.07123 1.19801 0.87552 0.79015 0.83977 1.90675 1.26383 1.51791 1.71761 1.20321 0.89050 0.80078 0.82222 1.90691 1.27772 1.54299 1.71444 1.48857 1.14660 1.60735 1.07371 1.22630 0.84746 1.02808 0.91031 1.22822 0.98052 0.99327 0.94990 1.19709 0.91042 0.81080 0.88845 1.86103 1.39275 1.19317 1.94924 1.21811 1.04788 1.14058 1.18856 0.91349 1.25813 0.99148 0.94580 0.97880 1.69737 1.26558 1.18819 1.40381 0.85435 0.78494 0.77840 0.79153 1.20306 1.20658 1.19097 1.22869 0.89800 0.97172 0.90676 0.93232 0.90065 0.92401 0.91554 0.90652 0.93517 0.89366 0.90986 0.90297 0.90220 0.91822 0.91892 0.74279 0.87769 0.91427 0.89597 0.89074 0.77218 0.91883 0.93816 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 7.04 71.98 0.51 -1.78 16 2 C -0.07 -1.03 0.94 -51.46 -0.05 -1.07 16 3 C -0.14 -1.69 8.15 71.98 0.59 -1.10 16 4 C -0.11 -1.21 5.90 31.67 0.19 -1.02 16 5 C -0.12 -1.41 6.91 31.88 0.22 -1.19 16 6 C -0.14 -2.55 6.53 31.67 0.21 -2.35 16 7 C 0.14 2.85 2.86 45.71 0.13 2.98 16 8 H 0.09 1.94 7.14 -2.39 -0.02 1.92 16 9 N -0.68 -17.72 4.50 -440.45 -1.98 -19.70 16 10 C 0.52 17.29 7.85 87.27 0.68 17.97 16 11 O -0.53 -18.61 13.46 -3.24 -0.04 -18.65 16 12 C 0.50 20.37 7.91 87.27 0.69 21.06 16 13 O -0.56 -25.05 16.80 -3.24 -0.05 -25.11 16 14 N -0.58 -25.27 3.34 -812.19 -2.71 -27.98 16 15 C 0.11 4.22 6.06 86.85 0.53 4.75 16 16 C -0.11 -4.65 6.22 31.99 0.20 -4.45 16 17 C 0.23 11.51 0.85 -10.35 -0.01 11.50 16 18 O -0.59 -30.25 13.07 -148.98 -1.95 -32.20 16 19 C -0.56 -29.21 8.11 25.60 0.21 -29.00 16 20 H 0.07 3.49 7.77 -2.91 -0.02 3.47 16 21 C 0.03 1.39 5.27 84.65 0.45 1.84 16 22 N -0.92 -49.16 10.96 21.45 0.24 -48.93 16 23 Si 0.97 41.72 29.54 68.60 2.03 43.75 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 27 C 0.12 5.83 5.41 86.64 0.47 6.30 16 28 H 0.05 0.89 7.70 -2.39 -0.02 0.88 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.90 6.93 -2.39 -0.02 0.89 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.09 0.70 7.84 -2.39 -0.02 0.68 16 35 H 0.07 0.79 7.84 -2.39 -0.02 0.77 16 36 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.06 1.28 8.05 -2.38 -0.02 1.26 16 40 H 0.42 10.29 5.24 -92.71 -0.49 9.81 16 41 H 0.10 3.69 6.16 -2.39 -0.01 3.68 16 42 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.09 3.32 8.04 -2.39 -0.02 3.30 16 44 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 45 H 0.38 20.10 7.23 -74.06 -0.54 19.56 16 46 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 47 H 0.04 2.37 8.00 -2.39 -0.02 2.35 16 48 H 0.05 2.58 7.81 -2.39 -0.02 2.56 16 Total: -1.00 -61.48 376.32 0.48 -61.00 By element: Atomic # 1 Polarization: 43.44 SS G_CDS: -0.05 Total: 43.39 kcal Atomic # 6 Polarization: 19.43 SS G_CDS: 5.00 Total: 24.43 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -4.46 Total: -96.61 kcal Atomic # 8 Polarization: -73.91 SS G_CDS: -2.05 Total: -75.96 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -61.48 0.48 -61.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329345018.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.364 kcal (2) G-P(sol) polarization free energy of solvation -61.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds