Wall clock time and date at job start Tue Mar 31 2020 14:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99915 * 2 1 4 4 H 1.08999 * 112.91038 * 341.25050 * 3 2 1 5 5 C 1.53777 * 113.61382 * 112.50740 * 3 2 1 6 6 C 1.53782 * 87.08350 * 139.98210 * 5 3 2 7 7 H 1.08991 * 113.69542 * 89.12239 * 6 5 3 8 8 N 1.46498 * 113.61177 * 220.02097 * 6 5 3 9 9 C 1.34785 * 119.99868 * 252.49184 * 8 6 5 10 10 O 1.21353 * 119.99802 * 0.02562 * 9 8 6 11 11 C 1.49446 * 119.99974 * 180.02562 * 9 8 6 12 12 O 1.21348 * 120.00345 * 359.97438 * 11 9 8 13 13 N 1.34776 * 119.99931 * 180.02562 * 11 9 8 14 14 C 1.46503 * 120.00105 * 180.02562 * 13 11 9 15 15 C 1.53000 * 109.46772 * 184.78922 * 14 13 11 16 16 C 1.50701 * 115.55011 * 294.79997 * 15 14 13 17 17 H 1.07997 * 119.99590 * 99.44690 * 16 15 14 18 18 C 1.37880 * 120.00166 * 279.44614 * 16 15 14 19 19 N 1.31508 * 119.99950 * 5.41810 * 18 16 15 20 20 Si 1.86801 * 119.99958 * 185.14564 * 18 16 15 21 21 H 1.48498 * 109.46878 * 180.27552 * 20 18 16 22 22 H 1.48499 * 109.47000 * 300.27544 * 20 18 16 23 23 H 1.48502 * 109.46982 * 60.27445 * 20 18 16 24 24 C 1.52998 * 117.51986 * 80.50843 * 15 14 13 25 25 C 1.52997 * 60.00059 * 107.47751 * 24 15 14 26 26 C 1.53786 * 87.07946 * 334.56394 * 6 5 3 27 27 C 1.52995 * 113.61215 * 139.98095 * 26 6 5 28 28 C 1.52999 * 113.61419 * 270.89020 * 26 6 5 29 29 H 1.09002 * 109.47141 * 59.99746 * 1 2 3 30 30 H 1.08999 * 109.47116 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46640 * 300.00068 * 1 2 3 32 32 H 1.08991 * 113.61663 * 25.42950 * 5 3 2 33 33 H 1.08999 * 113.61175 * 254.52739 * 5 3 2 34 34 H 0.97004 * 120.00696 * 72.49461 * 8 6 5 35 35 H 0.97008 * 119.99960 * 359.97438 * 13 11 9 36 36 H 1.08999 * 109.47340 * 64.78657 * 14 13 11 37 37 H 1.09005 * 109.46694 * 304.78357 * 14 13 11 38 38 H 0.96999 * 119.99960 * 354.71715 * 19 18 16 39 39 H 1.09002 * 117.49790 * 214.96643 * 24 15 14 40 40 H 1.08996 * 117.50280 * 359.97438 * 24 15 14 41 41 H 1.09001 * 117.49725 * 252.50694 * 25 24 15 42 42 H 1.09006 * 117.49897 * 107.48952 * 25 24 15 43 43 H 1.09006 * 109.46907 * 60.00630 * 27 26 6 44 44 H 1.09007 * 109.46959 * 180.02562 * 27 26 6 45 45 H 1.08997 * 109.47707 * 300.00327 * 27 26 6 46 46 H 1.09001 * 109.47496 * 59.99794 * 28 26 6 47 47 H 1.09004 * 109.46789 * 180.02562 * 28 26 6 48 48 H 1.09003 * 109.46960 * 299.99481 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3143 2.0798 -0.3227 5 6 2.7535 1.6488 1.3017 6 6 3.8227 2.3182 0.4221 7 1 3.6236 3.3694 0.2142 8 7 5.1935 2.0786 0.8802 9 6 5.8952 3.0746 1.4567 10 8 5.3913 4.1696 1.5967 11 6 7.2937 2.8303 1.9234 12 8 7.7974 1.7352 1.7839 13 7 7.9951 3.8261 2.5003 14 6 9.3663 3.5869 2.9574 15 6 9.8889 4.8324 3.6761 16 6 10.0465 6.0604 2.8169 17 1 9.2874 6.8285 2.8284 18 6 11.1599 6.2034 2.0162 19 7 12.0311 5.2229 1.9202 20 14 11.4268 7.7868 1.0617 21 1 12.6840 7.6862 0.2778 22 1 10.2844 8.0071 0.1390 23 1 11.5243 8.9257 2.0097 24 6 9.4659 5.0383 5.1319 25 6 10.9018 4.6245 4.8038 26 6 3.3756 1.3719 -0.7046 27 6 3.3234 2.0390 -2.0805 28 6 4.1241 0.0376 -0.7175 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 3.1167 0.7740 1.8409 33 1 2.2141 2.3476 1.9411 34 1 5.5962 1.2032 0.7686 35 1 7.5923 4.7015 2.6122 36 1 10.0024 3.3686 2.0996 37 1 9.3780 2.7399 3.6435 38 1 11.9317 4.4303 2.4704 39 1 9.3015 6.0620 5.4683 40 1 8.8147 4.2866 5.5780 41 1 11.1955 3.6004 5.0340 42 1 11.6822 5.3760 4.9242 43 1 4.3142 2.4106 -2.3419 44 1 2.9997 1.3114 -2.8250 45 1 2.6187 2.8701 -2.0549 46 1 3.9592 -0.4807 0.2271 47 1 3.7562 -0.5774 -1.5389 48 1 5.1904 0.2204 -0.8504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329582499.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:55 Heat of formation + Delta-G solvation = -99.979074 kcal Electronic energy + Delta-G solvation = -27963.429318 eV Core-core repulsion = 24018.980739 eV Total energy + Delta-G solvation = -3944.448579 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.09581 -41.05666 -39.57043 -38.72817 -37.56288 -35.45596 -34.33293 -33.98671 -31.60087 -28.94839 -28.54747 -27.72958 -27.02924 -26.03804 -23.82208 -23.51278 -23.06718 -21.63711 -21.36251 -20.29635 -19.24849 -18.41686 -18.22689 -17.58355 -17.07689 -16.65906 -16.51977 -16.32705 -16.00877 -15.70983 -15.60041 -15.18004 -15.07062 -14.92023 -14.61455 -14.30787 -14.26573 -14.18231 -13.60905 -13.26586 -13.17501 -13.02274 -12.88276 -12.84831 -12.71161 -12.64212 -12.33923 -12.23947 -11.96270 -11.89295 -11.68491 -11.61766 -11.53198 -10.82174 -10.61146 -10.51483 -10.35091 -10.31639 -10.22198 -10.12064 -8.54021 -6.30439 0.28782 1.28297 1.55595 1.61183 1.80122 2.08340 2.53231 2.58495 2.94209 3.19990 3.23231 3.26559 3.40846 3.48726 3.71635 3.76467 3.98384 4.18773 4.25795 4.31136 4.41694 4.42589 4.47803 4.50500 4.60017 4.63407 4.72469 4.74676 4.82666 4.83735 4.88269 4.90807 4.92142 5.00442 5.04243 5.07142 5.19871 5.23130 5.30738 5.33332 5.41034 5.44454 5.93623 6.12191 6.23480 6.29664 6.36984 6.68596 6.69724 6.91118 7.51501 8.85717 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020162 B = 0.002597 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.426439 B =10777.071157 C =11304.200067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.386 6.386 3 C 0.082 3.918 4 H 0.111 0.889 5 C -0.165 4.165 6 C 0.118 3.882 7 H 0.117 0.883 8 N -0.675 5.675 9 C 0.517 3.483 10 O -0.538 6.538 11 C 0.494 3.506 12 O -0.556 6.556 13 N -0.667 5.667 14 C 0.169 3.831 15 C -0.024 4.024 16 C -0.579 4.579 17 H 0.049 0.951 18 C -0.017 4.017 19 N -0.929 5.929 20 Si 1.106 2.894 21 H -0.288 1.288 22 H -0.276 1.276 23 H -0.271 1.271 24 C -0.165 4.165 25 C -0.172 4.172 26 C -0.084 4.084 27 C -0.138 4.138 28 C -0.126 4.126 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.418 0.582 35 H 0.415 0.585 36 H 0.038 0.962 37 H 0.058 0.942 38 H 0.266 0.734 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.067 -9.181 -4.631 25.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.305 6.305 3 C 0.024 3.976 4 H 0.129 0.871 5 C -0.204 4.204 6 C 0.014 3.986 7 H 0.135 0.865 8 N -0.328 5.328 9 C 0.298 3.702 10 O -0.415 6.415 11 C 0.275 3.725 12 O -0.436 6.436 13 N -0.317 5.317 14 C 0.045 3.955 15 C -0.025 4.025 16 C -0.617 4.617 17 H 0.067 0.933 18 C -0.218 4.218 19 N -0.564 5.564 20 Si 0.929 3.071 21 H -0.214 1.214 22 H -0.202 1.202 23 H -0.197 1.197 24 C -0.202 4.202 25 C -0.210 4.210 26 C -0.085 4.085 27 C -0.195 4.195 28 C -0.184 4.184 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.257 0.743 35 H 0.252 0.748 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.954 -8.617 -5.724 24.269 hybrid contribution -0.632 -0.546 1.284 1.532 sum -22.586 -9.163 -4.441 24.775 Atomic orbital electron populations 1.22978 0.79853 1.03706 1.00809 1.87923 1.21042 1.26996 1.94511 1.23583 0.93223 0.86015 0.94827 0.87134 1.23946 0.97072 1.01211 0.98174 1.22667 0.79053 1.00809 0.96117 0.86517 1.45698 1.14914 1.14101 1.58108 1.19965 0.86122 0.85084 0.79079 1.90739 1.70846 1.24342 1.55604 1.20419 0.87514 0.84916 0.79683 1.90699 1.71631 1.24451 1.56788 1.45730 1.14786 1.14338 1.56851 1.20895 0.80437 0.96868 0.97306 1.19320 1.00938 0.94330 0.87923 1.21491 1.07993 1.04118 1.28090 0.93310 1.26955 0.92835 1.04477 0.97502 1.70842 1.39211 1.07679 1.38697 0.83052 0.76257 0.72131 0.75611 1.21406 1.20203 1.19680 1.22881 0.96878 1.01423 0.99065 1.22737 0.92626 1.00415 1.05262 1.22562 0.95124 0.95880 0.94914 1.21779 1.02302 1.00785 0.94637 1.21425 0.99012 0.94660 1.03274 0.92840 0.88807 0.93456 0.89143 0.89934 0.74341 0.74831 0.94339 0.92390 0.92326 0.89668 0.88850 0.89583 0.91293 0.92835 0.91039 0.91160 0.91992 0.90768 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.85 113.37 1.23 1.45 16 2 O -0.39 -6.00 9.80 -148.98 -1.46 -7.46 16 3 C 0.08 1.17 3.72 31.12 0.12 1.28 16 4 H 0.11 1.17 7.69 -2.39 -0.02 1.15 16 5 C -0.17 -2.83 7.36 31.12 0.23 -2.60 16 6 C 0.12 2.36 3.69 45.52 0.17 2.53 16 7 H 0.12 2.51 7.42 -2.39 -0.02 2.49 16 8 N -0.67 -17.03 5.22 -441.36 -2.30 -19.33 16 9 C 0.52 16.88 7.89 87.27 0.69 17.56 16 10 O -0.54 -19.40 16.08 -3.26 -0.05 -19.45 16 11 C 0.49 18.80 7.89 87.27 0.69 19.49 16 12 O -0.56 -22.81 16.47 -3.24 -0.05 -22.86 16 13 N -0.67 -27.22 5.47 -464.40 -2.54 -29.76 16 14 C 0.17 7.55 5.37 86.38 0.46 8.02 16 15 C -0.02 -1.13 0.91 -52.93 -0.05 -1.18 16 16 C -0.58 -30.49 8.57 25.60 0.22 -30.27 16 17 H 0.05 2.57 7.82 -2.91 -0.02 2.55 16 18 C -0.02 -0.92 5.42 84.66 0.46 -0.47 16 19 N -0.93 -54.21 13.61 21.45 0.29 -53.91 16 20 Si 1.11 49.23 29.91 68.60 2.05 51.28 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 C -0.17 -6.56 9.96 30.59 0.30 -6.25 16 25 C -0.17 -7.47 8.96 30.59 0.27 -7.19 16 26 C -0.08 -1.34 1.35 -51.65 -0.07 -1.41 16 27 C -0.14 -1.95 9.19 71.98 0.66 -1.29 16 28 C -0.13 -2.10 7.44 71.98 0.54 -1.57 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.38 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.09 1.68 7.65 -2.39 -0.02 1.66 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.42 9.99 6.13 -92.71 -0.57 9.42 16 35 H 0.42 16.88 7.80 -92.70 -0.72 16.16 16 36 H 0.04 1.97 7.64 -2.39 -0.02 1.96 16 37 H 0.06 2.44 8.09 -2.38 -0.02 2.42 16 38 H 0.27 15.50 6.08 -92.71 -0.56 14.93 16 39 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 40 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 41 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 42 H 0.07 3.22 8.14 -2.38 -0.02 3.20 16 43 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.07 0.83 7.94 -2.39 -0.02 0.81 16 46 H 0.06 1.08 7.18 -2.39 -0.02 1.06 16 47 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.05 0.98 7.10 -2.39 -0.02 0.96 16 Total: -1.00 -64.69 394.57 1.74 -62.95 By element: Atomic # 1 Polarization: 40.55 SS G_CDS: -0.12 Total: 40.44 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 5.92 Total: -1.89 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -4.55 Total: -103.00 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -1.57 Total: -49.78 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.05 Total: 51.28 kcal Total: -64.69 1.74 -62.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329582499.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.027 kcal (2) G-P(sol) polarization free energy of solvation -64.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds