Wall clock time and date at job start Tue Mar 31 2020 14:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00107 * 2 1 4 4 H 1.08998 * 112.84737 * 18.80766 * 3 2 1 5 5 C 1.53784 * 113.69255 * 247.53873 * 3 2 1 6 6 C 1.53787 * 87.08221 * 270.87607 * 5 3 2 7 7 H 1.08991 * 113.68519 * 220.01112 * 6 5 3 8 8 N 1.46498 * 113.61210 * 89.11342 * 6 5 3 9 9 C 1.34781 * 119.99634 * 107.50634 * 8 6 5 10 10 O 1.21348 * 119.99955 * 359.97438 * 9 8 6 11 11 C 1.49450 * 119.99943 * 179.97438 * 9 8 6 12 12 O 1.21346 * 119.99791 * 5.09578 * 11 9 8 13 13 N 1.34771 * 119.99840 * 185.09020 * 11 9 8 14 14 C 1.46505 * 119.99981 * 174.80260 * 13 11 9 15 15 C 1.52998 * 109.47078 * 185.05451 * 14 13 11 16 16 C 1.50705 * 115.54995 * 275.86688 * 15 14 13 17 17 H 1.08003 * 119.99523 * 114.57484 * 16 15 14 18 18 C 1.37873 * 119.99997 * 294.57450 * 16 15 14 19 19 N 1.31513 * 120.00230 * 352.74542 * 18 16 15 20 20 Si 1.86804 * 119.99941 * 172.73679 * 18 16 15 21 21 H 1.48503 * 109.46978 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46785 * 119.99962 * 20 18 16 23 23 H 1.48494 * 109.47311 * 240.00338 * 20 18 16 24 24 C 1.52996 * 117.49885 * 130.16374 * 15 14 13 25 25 C 1.52996 * 60.00119 * 252.50919 * 24 15 14 26 26 C 1.53784 * 113.60972 * 150.00431 * 3 2 1 27 27 C 1.52994 * 113.61566 * 334.65025 * 26 3 2 28 28 C 1.52998 * 113.60856 * 203.74982 * 26 3 2 29 29 H 1.09004 * 109.46426 * 299.99600 * 1 2 3 30 30 H 1.08998 * 109.47277 * 59.99142 * 1 2 3 31 31 H 1.08997 * 109.47020 * 180.02562 * 1 2 3 32 32 H 1.08994 * 113.61556 * 156.32265 * 5 3 2 33 33 H 1.09007 * 113.61082 * 25.42192 * 5 3 2 34 34 H 0.96997 * 120.00177 * 287.50115 * 8 6 5 35 35 H 0.97002 * 120.00596 * 355.08085 * 13 11 9 36 36 H 1.09003 * 109.46837 * 305.05445 * 14 13 11 37 37 H 1.09000 * 109.46911 * 65.05467 * 14 13 11 38 38 H 0.97004 * 120.00219 * 185.00665 * 19 18 16 39 39 H 1.09000 * 117.50005 * 359.97438 * 24 15 14 40 40 H 1.09005 * 117.50431 * 145.01615 * 24 15 14 41 41 H 1.09005 * 117.49680 * 252.51042 * 25 24 15 42 42 H 1.08990 * 117.52196 * 107.48144 * 25 24 15 43 43 H 1.09000 * 109.46873 * 157.49794 * 27 26 3 44 44 H 1.08996 * 109.47224 * 277.49558 * 27 26 3 45 45 H 1.08993 * 109.47240 * 37.50299 * 27 26 3 46 46 H 1.08997 * 109.47652 * 322.49965 * 28 26 3 47 47 H 1.09000 * 109.47313 * 82.50733 * 28 26 3 48 48 H 1.09004 * 109.47159 * 202.50399 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3138 2.0789 0.3238 5 6 2.7531 1.6512 -1.3014 6 6 4.0063 1.0352 -0.6571 7 1 4.9219 1.5894 -0.8631 8 7 4.1446 -0.4028 -0.9004 9 6 5.0864 -0.8547 -1.7521 10 8 5.8194 -0.0703 -2.3178 11 6 5.2279 -2.3217 -1.9998 12 8 4.4372 -3.0992 -1.5072 13 7 6.2337 -2.7810 -2.7704 14 6 6.4412 -4.2234 -2.9210 15 6 7.7116 -4.4736 -3.7360 16 6 7.5430 -4.4285 -5.2329 17 1 8.0296 -3.6545 -5.8080 18 6 6.7676 -5.3751 -5.8682 19 7 6.2925 -6.3978 -5.1914 20 14 6.3917 -5.2050 -7.6901 21 1 7.0392 -3.9766 -8.2165 22 1 6.9152 -6.3900 -8.4162 23 1 4.9226 -5.1135 -7.8860 24 6 8.7311 -5.4635 -3.1691 25 6 9.0334 -3.9638 -3.1583 26 6 3.3756 1.3717 0.7045 27 6 3.5750 0.2810 1.7587 28 6 3.7335 2.7681 1.2172 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 2.8378 2.7223 -1.4845 33 1 2.3925 1.0995 -2.1697 34 1 3.5585 -1.0297 -0.4484 35 1 6.8229 -2.1566 -3.2220 36 1 6.5450 -4.6803 -1.9368 37 1 5.5866 -4.6615 -3.4366 38 1 5.8086 -7.1013 -5.6517 39 1 8.4970 -5.9363 -2.2153 40 1 9.2801 -6.0826 -3.8787 41 1 9.7813 -3.5960 -3.8609 42 1 8.9979 -3.4498 -2.1979 43 1 4.6412 0.1256 1.9235 44 1 3.1039 0.5878 2.6925 45 1 3.1220 -0.6474 1.4110 46 1 3.3874 3.5167 0.5045 47 1 3.2534 2.9352 2.1815 48 1 4.8146 2.8474 1.3310 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329582502.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:04 Heat of formation + Delta-G solvation = -70.433353 kcal Electronic energy + Delta-G solvation = -28329.124532 eV Core-core repulsion = 24385.957151 eV Total energy + Delta-G solvation = -3943.167381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.10603 -39.69217 -37.96612 -36.70892 -36.61863 -33.83456 -32.88765 -32.04464 -30.76490 -27.87865 -27.26986 -26.69104 -25.58729 -24.85018 -23.05384 -22.39404 -21.23180 -19.85896 -19.45617 -19.05701 -17.92476 -16.80143 -16.40127 -16.07150 -15.82273 -15.63525 -15.42748 -15.18912 -14.67575 -14.62481 -14.09355 -13.98709 -13.82531 -13.51465 -13.23392 -13.13497 -12.90433 -12.62626 -12.48616 -12.33336 -11.88071 -11.78797 -11.73146 -11.57246 -11.24739 -11.11732 -10.98791 -10.92136 -10.90744 -10.50496 -10.33675 -10.29672 -9.71164 -9.63681 -9.14936 -9.06354 -9.05395 -8.60864 -8.31951 -8.18395 -6.08578 -4.15028 1.85052 2.70218 3.27176 3.30617 3.36380 3.39843 3.64903 4.01480 4.20170 4.27256 4.37142 4.55267 4.67467 4.86194 4.92689 4.95597 5.08551 5.14450 5.16663 5.30928 5.34197 5.37778 5.38370 5.45458 5.56283 5.60097 5.65297 5.75524 5.81338 5.96907 5.99828 6.16411 6.29258 6.41358 6.44734 6.55953 6.65572 6.81157 6.92687 7.03874 7.07703 7.34877 7.42204 7.46204 7.84409 7.95830 8.21720 8.33784 8.58837 8.85818 9.50350 10.99221 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017275 B = 0.002905 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.441433 B = 9637.835489 C =10143.104842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.364 6.364 3 C 0.069 3.931 4 H 0.076 0.924 5 C -0.174 4.174 6 C 0.134 3.866 7 H 0.106 0.894 8 N -0.681 5.681 9 C 0.510 3.490 10 O -0.525 6.525 11 C 0.495 3.505 12 O -0.534 6.534 13 N -0.673 5.673 14 C 0.160 3.840 15 C 0.032 3.968 16 C -0.499 4.499 17 H 0.063 0.937 18 C 0.072 3.928 19 N -0.875 5.875 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.283 1.283 24 C -0.163 4.163 25 C -0.207 4.207 26 C -0.094 4.094 27 C -0.136 4.136 28 C -0.125 4.125 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.418 0.582 35 H 0.410 0.590 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.262 0.738 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.234 16.795 13.506 23.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.282 6.282 3 C 0.011 3.989 4 H 0.094 0.906 5 C -0.213 4.213 6 C 0.028 3.972 7 H 0.123 0.877 8 N -0.335 5.335 9 C 0.291 3.709 10 O -0.400 6.400 11 C 0.274 3.726 12 O -0.413 6.413 13 N -0.323 5.323 14 C 0.038 3.962 15 C 0.031 3.969 16 C -0.536 4.536 17 H 0.081 0.919 18 C -0.132 4.132 19 N -0.511 5.511 20 Si 0.719 3.281 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.201 4.201 25 C -0.244 4.244 26 C -0.095 4.095 27 C -0.193 4.193 28 C -0.182 4.182 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.257 0.743 35 H 0.246 0.754 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.307 16.439 13.429 23.178 hybrid contribution -0.498 0.124 -1.062 1.180 sum -9.805 16.563 12.367 22.879 Atomic orbital electron populations 1.22812 0.80604 1.03093 0.99799 1.87839 1.19895 1.26098 1.94400 1.23251 0.94074 0.85432 0.96146 0.90646 1.23942 0.97120 1.01704 0.98527 1.21892 0.98798 0.81736 0.94798 0.87654 1.45428 1.35592 1.07615 1.44842 1.20541 0.80695 0.89904 0.79730 1.90726 1.43490 1.57624 1.48169 1.19917 0.83077 0.88108 0.81521 1.90729 1.41872 1.57526 1.51125 1.46017 1.29941 1.10631 1.45747 1.21226 1.00713 0.76444 0.97859 1.19058 0.84818 0.98731 0.94295 1.20498 1.30343 1.13535 0.89263 0.91884 1.24991 0.94962 0.95133 0.98129 1.69967 1.36433 1.09176 1.35571 0.86546 0.78270 0.78157 0.85146 1.19616 1.21008 1.20870 1.22715 1.06006 0.90821 1.00544 1.22901 1.02764 0.97916 1.00850 1.22515 0.94758 0.97329 0.94903 1.21573 1.01902 0.98463 0.97342 1.21551 1.02354 0.93232 1.01083 0.94056 0.94000 0.89301 0.88174 0.90010 0.74287 0.75392 0.93570 0.89440 0.92791 0.91591 0.89864 0.90187 0.91365 0.92286 0.92481 0.91104 0.91978 0.91763 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.85 101.05 1.10 1.35 16 2 O -0.36 -3.74 7.94 -35.23 -0.28 -4.02 16 3 C 0.07 0.60 3.79 -25.92 -0.10 0.50 16 4 H 0.08 0.51 7.83 -51.93 -0.41 0.11 16 5 C -0.17 -1.67 7.36 -25.91 -0.19 -1.86 16 6 C 0.13 1.51 3.78 -67.11 -0.25 1.25 16 7 H 0.11 1.26 7.42 -51.93 -0.39 0.87 16 8 N -0.68 -9.60 4.65 -53.45 -0.25 -9.85 16 9 C 0.51 8.81 7.89 -11.58 -0.09 8.72 16 10 O -0.52 -9.81 16.09 5.50 0.09 -9.72 16 11 C 0.49 9.79 7.88 -11.59 -0.09 9.70 16 12 O -0.53 -11.61 16.50 5.50 0.09 -11.52 16 13 N -0.67 -13.93 5.46 -60.73 -0.33 -14.26 16 14 C 0.16 3.71 5.50 -4.04 -0.02 3.69 16 15 C 0.03 0.76 1.31 -155.66 -0.20 0.55 16 16 C -0.50 -13.19 8.82 -34.44 -0.30 -13.49 16 17 H 0.06 1.67 7.82 -52.48 -0.41 1.25 16 18 C 0.07 1.93 5.24 -17.82 -0.09 1.84 16 19 N -0.88 -24.38 12.58 55.43 0.70 -23.68 16 20 Si 0.89 20.96 29.55 -169.99 -5.02 15.93 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.16 -3.66 9.88 -26.73 -0.26 -3.93 16 25 C -0.21 -4.32 9.79 -26.73 -0.26 -4.58 16 26 C -0.09 -0.81 1.34 -153.70 -0.21 -1.02 16 27 C -0.14 -1.25 8.43 37.15 0.31 -0.94 16 28 C -0.12 -0.79 9.07 37.16 0.34 -0.45 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.74 7.65 -51.93 -0.40 0.35 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.42 5.96 5.58 -40.82 -0.23 5.73 16 35 H 0.41 8.22 7.90 -40.82 -0.32 7.90 16 36 H 0.05 1.06 7.91 -51.93 -0.41 0.65 16 37 H 0.09 2.32 7.26 -51.93 -0.38 1.95 16 38 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 39 H 0.07 1.41 8.06 -51.93 -0.42 0.99 16 40 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 41 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.76 5.68 -51.93 -0.29 0.46 16 46 H 0.06 0.33 7.34 -51.93 -0.38 -0.05 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 393.34 15.07 5.93 5.93 Total: -1.00 -30.05 393.34 -7.23 -37.28 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -7.82 Total: 12.56 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -0.33 Total: 1.35 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.12 Total: -47.79 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.10 Total: -25.26 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.05 -7.23 -37.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329582502.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.151 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds