Wall clock time and date at job start Tue Mar 31 2020 14:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 110.21002 * 2 1 4 4 C 1.50126 * 110.37201 * 122.01707 * 2 1 3 5 5 C 1.54845 * 110.81452 * 216.71836 * 4 2 1 6 6 C 1.54407 * 110.06962 * 321.07159 * 5 4 2 7 7 N 1.43438 * 116.38884 * 318.65466 * 6 5 4 8 8 C 1.34779 * 120.53539 * 271.72842 * 7 6 5 9 9 O 1.21349 * 119.99943 * 185.68300 * 8 7 6 10 10 C 1.49453 * 120.00065 * 5.68295 * 8 7 6 11 11 O 1.21351 * 119.99613 * 358.74144 * 10 8 7 12 12 N 1.34768 * 119.99942 * 178.74347 * 10 8 7 13 13 C 1.46500 * 119.99985 * 185.08155 * 12 10 8 14 14 C 1.53004 * 109.47373 * 175.01299 * 13 12 10 15 15 C 1.50706 * 115.54639 * 307.27361 * 14 13 12 16 16 H 1.08004 * 119.99277 * 144.25723 * 15 14 13 17 17 C 1.37866 * 120.00281 * 324.26076 * 15 14 13 18 18 N 1.31518 * 120.00013 * 3.39682 * 17 15 14 19 19 Si 1.86798 * 120.00088 * 183.40142 * 17 15 14 20 20 H 1.48496 * 109.47556 * 89.99557 * 19 17 15 21 21 H 1.48499 * 109.47400 * 209.99906 * 19 17 15 22 22 H 1.48506 * 109.47121 * 329.99789 * 19 17 15 23 23 C 1.52992 * 117.50075 * 161.60097 * 14 13 12 24 24 C 1.52996 * 117.49945 * 92.94197 * 14 13 12 25 25 C 1.50168 * 118.92594 * 91.45366 * 7 6 5 26 26 C 1.46231 * 107.53364 * 289.84115 * 25 7 6 27 27 H 1.08995 * 109.47220 * 181.93488 * 1 2 3 28 28 H 1.08998 * 109.46814 * 301.92951 * 1 2 3 29 29 H 1.09001 * 109.47231 * 61.93226 * 1 2 3 30 30 H 0.96702 * 114.00251 * 298.06484 * 3 2 1 31 31 H 1.08999 * 109.20515 * 337.06309 * 4 2 1 32 32 H 1.09002 * 109.20707 * 96.37030 * 4 2 1 33 33 H 1.08997 * 109.35959 * 81.33792 * 5 4 2 34 34 H 1.08999 * 109.35271 * 200.92618 * 5 4 2 35 35 H 1.08994 * 107.88844 * 196.93153 * 6 5 4 36 36 H 1.08997 * 108.10011 * 80.54085 * 6 5 4 37 37 H 0.97000 * 120.00494 * 5.07994 * 12 10 8 38 38 H 1.08996 * 109.47743 * 295.01509 * 13 12 10 39 39 H 1.09004 * 109.46855 * 55.01631 * 13 12 10 40 40 H 0.97005 * 119.99739 * 185.01138 * 18 17 15 41 41 H 1.09001 * 117.50097 * 0.02562 * 23 14 13 42 42 H 1.09003 * 117.49914 * 145.01900 * 23 14 13 43 43 H 1.08995 * 117.49850 * 214.98316 * 24 14 13 44 44 H 1.09005 * 117.49591 * 0.02562 * 24 14 13 45 45 H 1.09002 * 109.84475 * 49.34798 * 25 7 6 46 46 H 1.08998 * 109.84469 * 170.32832 * 25 7 6 47 47 H 1.09007 * 108.52093 * 179.65282 * 26 25 7 48 48 H 1.09001 * 108.52116 * 297.16808 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0237 1.3410 0.0000 4 6 2.0527 -0.7461 1.1933 5 6 3.3318 -0.0717 1.7470 6 6 4.2145 0.4269 0.5823 7 7 4.3332 -0.4485 -0.5477 8 6 5.2948 -1.3921 -0.5849 9 8 5.4527 -2.0584 -1.5868 10 6 6.1667 -1.6179 0.6077 11 8 6.0239 -0.9362 1.6015 12 7 7.1115 -2.5786 0.5796 13 6 7.8906 -2.8753 1.7842 14 6 8.7984 -4.0785 1.5210 15 6 8.1101 -5.3065 0.9830 16 1 8.6137 -5.9367 0.2648 17 6 6.8379 -5.6255 1.4075 18 7 6.1987 -4.8231 2.2305 19 14 6.0218 -7.1975 0.8139 20 1 6.3434 -8.3057 1.7485 21 1 4.5504 -7.0032 0.7641 22 1 6.5229 -7.5334 -0.5432 23 6 9.9833 -4.2894 2.4655 24 6 10.2218 -3.7968 1.0361 25 6 3.3648 -0.3007 -1.6859 26 6 2.0579 -0.7569 -1.2145 27 1 -0.3633 -1.0270 0.0347 28 1 -0.3633 0.5435 0.8722 29 1 -0.3634 0.4835 -0.9068 30 1 1.7696 1.8537 -0.7795 31 1 1.2888 -0.7592 1.9708 32 1 2.2846 -1.7707 0.9022 33 1 3.0515 0.7724 2.3770 34 1 3.8922 -0.7933 2.3415 35 1 5.2141 0.6119 0.9753 36 1 3.8108 1.3778 0.2346 37 1 7.2756 -3.0736 -0.2383 38 1 8.5003 -2.0103 2.0449 39 1 7.2137 -3.1041 2.6074 40 1 5.3342 -5.0819 2.5864 41 1 10.1160 -3.5713 3.2747 42 1 10.2654 -5.3164 2.6975 43 1 10.6607 -4.4998 0.3282 44 1 10.5117 -2.7542 0.9049 45 1 3.3050 0.7451 -1.9874 46 1 3.6882 -0.9116 -2.5286 47 1 1.3400 -0.6505 -2.0278 48 1 2.1318 -1.8138 -0.9585 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330226496.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:58 Heat of formation + Delta-G solvation = -70.903461 kcal Electronic energy + Delta-G solvation = -29874.559216 eV Core-core repulsion = 25931.371450 eV Total energy + Delta-G solvation = -3943.187766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.73806 -39.15698 -37.69083 -36.66905 -35.38784 -33.24917 -32.82104 -32.49903 -32.13977 -29.30794 -26.72503 -25.93208 -25.48861 -24.09108 -23.12959 -21.30831 -20.87116 -20.12495 -19.34365 -18.69421 -17.21408 -16.75800 -16.72476 -16.13156 -15.57219 -15.23931 -15.00708 -14.80869 -14.44806 -14.29267 -13.96932 -13.80442 -13.55796 -13.25153 -13.18138 -12.80324 -12.56763 -12.30993 -12.11730 -11.91857 -11.77026 -11.53028 -11.41417 -11.27177 -11.07944 -11.06443 -10.77133 -10.72383 -10.52449 -10.48207 -10.26734 -10.17446 -9.74344 -9.58547 -9.02137 -8.85510 -8.48404 -8.41876 -8.23943 -7.90021 -6.03485 -4.19264 2.17528 2.90525 3.24603 3.32788 3.35452 3.99847 4.04879 4.24532 4.33118 4.55075 4.65429 4.79501 4.94024 5.14123 5.27973 5.35311 5.41173 5.42875 5.47347 5.48395 5.55829 5.60312 5.77394 5.81986 5.94061 5.99936 6.01942 6.13640 6.20055 6.28111 6.33339 6.49339 6.55841 6.59917 6.67074 6.70148 6.86328 6.88603 7.04963 7.24810 7.44312 7.53324 7.56329 7.64282 7.90978 8.15680 8.28816 8.55350 8.81577 9.00504 9.44419 10.89048 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.015935 B = 0.004127 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.704896 B = 6782.268470 C = 7476.242827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.135 3.865 3 O -0.540 6.540 4 C -0.114 4.114 5 C -0.111 4.111 6 C 0.093 3.907 7 N -0.579 5.579 8 C 0.506 3.494 9 O -0.532 6.532 10 C 0.497 3.503 11 O -0.537 6.537 12 N -0.644 5.644 13 C 0.166 3.834 14 C 0.034 3.966 15 C -0.494 4.494 16 H 0.062 0.938 17 C 0.076 3.924 18 N -0.871 5.871 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.272 1.272 23 C -0.196 4.196 24 C -0.212 4.212 25 C 0.123 3.877 26 C -0.170 4.170 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.364 0.636 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.408 0.592 38 H 0.025 0.975 39 H 0.117 0.883 40 H 0.262 0.738 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.093 0.907 47 H 0.070 0.930 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.135 11.731 -5.011 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.095 3.905 3 O -0.346 6.346 4 C -0.152 4.152 5 C -0.149 4.149 6 C -0.030 4.030 7 N -0.313 5.313 8 C 0.290 3.710 9 O -0.408 6.408 10 C 0.277 3.723 11 O -0.417 6.417 12 N -0.291 5.291 13 C 0.043 3.957 14 C 0.033 3.967 15 C -0.532 4.532 16 H 0.080 0.920 17 C -0.128 4.128 18 N -0.507 5.507 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.235 4.235 24 C -0.249 4.249 25 C 0.002 3.998 26 C -0.208 4.208 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.211 0.789 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.244 0.756 38 H 0.043 0.957 39 H 0.135 0.865 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.112 0.888 47 H 0.088 0.912 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.088 11.661 -4.214 15.985 hybrid contribution -0.780 -1.197 -1.058 1.778 sum -10.868 10.465 -5.272 15.982 Atomic orbital electron populations 1.22446 0.95360 1.02681 1.02244 1.20456 0.91897 0.82513 0.95614 1.86822 1.75988 1.24149 1.47623 1.21677 0.98458 0.98895 0.96140 1.22181 0.94212 1.00681 0.97862 1.21687 1.02396 0.92919 0.85951 1.47894 1.30112 1.33997 1.19329 1.20744 0.81741 0.79930 0.88608 1.90693 1.70169 1.46739 1.33229 1.19669 0.82199 0.82818 0.87608 1.90585 1.70073 1.47081 1.33978 1.45508 1.33787 1.33904 1.15940 1.21183 0.93374 0.92888 0.88216 1.19225 0.84905 0.95030 0.97535 1.20523 0.99213 1.07679 1.25748 0.91996 1.24964 0.96476 0.96542 0.94863 1.69870 1.14969 1.34530 1.31360 0.86549 0.78590 0.83386 0.79345 1.20588 1.21244 1.19702 1.22938 1.08698 1.00152 0.91705 1.22974 1.05058 0.99226 0.97651 1.20819 0.87287 1.01839 0.89848 1.21603 0.97793 1.02331 0.99119 0.91614 0.91686 0.92490 0.78902 0.92141 0.91244 0.91493 0.90816 0.88954 0.88763 0.75601 0.95715 0.86500 0.92785 0.91407 0.90152 0.90508 0.91263 0.90688 0.88830 0.91186 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 8.52 37.16 0.32 -1.07 16 2 C 0.14 1.37 1.05 -92.29 -0.10 1.28 16 3 O -0.54 -5.04 7.92 -35.23 -0.28 -5.32 16 4 C -0.11 -1.49 5.23 -27.19 -0.14 -1.64 16 5 C -0.11 -1.65 5.74 -25.02 -0.14 -1.80 16 6 C 0.09 1.39 4.31 -4.92 -0.02 1.37 16 7 N -0.58 -9.05 2.58 -176.36 -0.45 -9.51 16 8 C 0.51 9.89 7.74 -11.58 -0.09 9.80 16 9 O -0.53 -11.35 15.96 5.50 0.09 -11.26 16 10 C 0.50 10.68 7.75 -11.59 -0.09 10.59 16 11 O -0.54 -11.77 11.76 5.50 0.06 -11.71 16 12 N -0.64 -14.54 4.95 -60.73 -0.30 -14.84 16 13 C 0.17 3.89 4.61 -4.04 -0.02 3.87 16 14 C 0.03 0.80 2.05 -155.66 -0.32 0.48 16 15 C -0.49 -12.76 8.37 -34.44 -0.29 -13.04 16 16 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 17 C 0.08 1.96 5.27 -17.82 -0.09 1.87 16 18 N -0.87 -23.18 10.15 55.43 0.56 -22.62 16 19 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 C -0.20 -4.24 9.96 -26.70 -0.27 -4.51 16 24 C -0.21 -4.42 9.92 -26.70 -0.26 -4.68 16 25 C 0.12 1.47 5.79 -5.21 -0.03 1.44 16 26 C -0.17 -1.81 4.67 -30.19 -0.14 -1.95 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.36 2.04 8.77 45.96 0.40 2.44 16 31 H 0.06 0.73 7.72 -51.93 -0.40 0.33 16 32 H 0.07 1.05 6.83 -51.93 -0.35 0.69 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.34 6.72 -51.93 -0.35 0.99 16 35 H 0.09 1.59 5.52 -51.93 -0.29 1.30 16 36 H 0.09 1.21 5.31 -51.55 -0.27 0.94 16 37 H 0.41 9.43 7.54 -40.82 -0.31 9.12 16 38 H 0.02 0.56 8.08 -51.93 -0.42 0.14 16 39 H 0.12 3.08 6.03 -51.93 -0.31 2.76 16 40 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 43 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.07 0.69 7.41 -51.93 -0.38 0.31 16 46 H 0.09 1.23 7.11 -51.93 -0.37 0.86 16 47 H 0.07 0.57 7.80 -51.92 -0.40 0.17 16 48 H 0.08 1.00 6.93 -51.93 -0.36 0.64 16 LS Contribution 368.14 15.07 5.55 5.55 Total: -1.00 -28.62 368.14 -8.23 -36.84 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -6.75 Total: 15.10 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -1.69 Total: 2.01 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.19 Total: -46.96 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.13 Total: -28.29 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.62 -8.23 -36.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330226496.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.060 kcal (2) G-P(sol) polarization free energy of solvation -28.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds