Wall clock time and date at job start Tue Mar 31 2020 13:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99988 * 2 1 4 4 H 1.48500 * 109.47306 * 269.99970 * 3 2 1 5 5 H 1.48504 * 109.46868 * 30.00348 * 3 2 1 6 6 H 1.48504 * 109.47149 * 150.00037 * 3 2 1 7 7 C 1.37884 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99600 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99870 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.52103 * 299.91398 * 9 7 2 11 11 C 1.53041 * 109.49794 * 179.83710 * 9 7 2 12 12 C 1.53041 * 109.54138 * 178.67950 * 11 9 7 13 13 C 1.52761 * 109.37922 * 61.24014 * 12 11 9 14 14 N 1.46927 * 109.01048 * 305.58487 * 13 12 11 15 15 C 1.34772 * 120.63408 * 233.58656 * 14 13 12 16 16 O 1.21349 * 120.00243 * 184.12304 * 15 14 13 17 17 C 1.49455 * 119.99891 * 3.85471 * 15 14 13 18 18 O 1.21343 * 119.99927 * 353.81084 * 17 15 14 19 19 N 1.34776 * 120.00138 * 173.81657 * 17 15 14 20 20 C 1.46490 * 120.00141 * 179.97438 * 19 17 15 21 21 H 1.09000 * 109.47511 * 34.99937 * 20 19 17 22 22 C 1.53001 * 109.47159 * 155.00129 * 20 19 17 23 23 C 1.53001 * 109.47228 * 179.97438 * 22 20 19 24 24 C 1.53002 * 109.47114 * 300.00033 * 23 22 20 25 25 H 1.08997 * 109.47080 * 299.99648 * 24 23 22 26 26 O 1.42903 * 109.46741 * 179.97438 * 24 23 22 27 27 C 1.53001 * 109.47100 * 59.99888 * 24 23 22 28 28 C 1.52991 * 109.47193 * 300.00031 * 27 24 23 29 29 C 1.46924 * 118.73512 * 53.31011 * 14 13 12 30 30 H 0.96994 * 120.00101 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46066 * 298.70285 * 11 9 7 32 32 H 1.09007 * 109.45966 * 58.65821 * 11 9 7 33 33 H 1.08999 * 109.49777 * 181.31737 * 12 11 9 34 34 H 1.09000 * 109.49716 * 301.41374 * 12 11 9 35 35 H 1.09003 * 109.50324 * 185.70679 * 13 12 11 36 36 H 1.08998 * 109.43374 * 65.42502 * 13 12 11 37 37 H 0.97008 * 119.99461 * 0.02562 * 19 17 15 38 38 H 1.08994 * 109.47169 * 299.99899 * 22 20 19 39 39 H 1.09002 * 109.47001 * 60.00314 * 22 20 19 40 40 H 1.08997 * 109.46859 * 59.99816 * 23 22 20 41 41 H 1.08999 * 109.47122 * 179.97438 * 23 22 20 42 42 H 0.96708 * 113.99786 * 179.97438 * 26 24 23 43 43 H 1.09005 * 109.46718 * 60.00037 * 27 24 23 44 44 H 1.08997 * 109.46878 * 179.97438 * 27 24 23 45 45 H 1.09000 * 109.47391 * 300.00140 * 28 27 24 46 46 H 1.08999 * 109.47087 * 180.02562 * 28 27 24 47 47 H 1.09005 * 109.58601 * 66.43161 * 29 14 13 48 48 H 1.09001 * 109.58834 * 186.85149 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6249 -2.5582 0.8908 11 6 2.2450 -3.6628 -0.0029 12 6 1.4812 -4.9886 0.0303 13 6 0.6028 -5.0988 -1.2146 14 7 -0.2556 -3.9095 -1.3016 15 6 -1.5922 -4.0345 -1.4205 16 8 -2.2833 -3.0477 -1.5666 17 6 -2.2228 -5.3888 -1.3784 18 8 -1.5260 -6.3818 -1.3503 19 7 -3.5653 -5.5072 -1.3717 20 6 -4.1834 -6.8347 -1.3310 21 1 -3.5721 -7.5017 -0.7231 22 6 -5.5824 -6.7274 -0.7210 23 6 -6.2282 -8.1138 -0.6791 24 6 -6.3329 -8.6709 -2.1002 25 1 -6.9441 -8.0036 -2.7079 26 8 -6.9355 -9.9660 -2.0609 27 6 -4.9338 -8.7782 -2.7103 28 6 -4.2881 -7.3918 -2.7522 29 6 0.3705 -2.5813 -1.2502 30 1 -0.4850 0.8400 0.0004 31 1 2.8543 -3.6173 -0.9056 32 1 2.8892 -3.5928 0.8736 33 1 2.1900 -5.8164 0.0514 34 1 0.8528 -5.0242 0.9203 35 1 -0.0173 -5.9926 -1.1445 36 1 1.2350 -5.1587 -2.1004 37 1 -4.1223 -4.7133 -1.3946 38 1 -5.5079 -6.3302 0.2912 39 1 -6.1937 -6.0605 -1.3290 40 1 -5.6170 -8.7811 -0.0714 41 1 -7.2247 -8.0375 -0.2441 42 1 -7.0341 -10.3805 -2.9291 43 1 -4.3227 -9.4455 -2.1025 44 1 -5.0084 -9.1754 -3.7225 45 1 -4.8992 -6.7245 -3.3599 46 1 -3.2916 -7.4682 -3.1872 47 1 0.9835 -2.4317 -2.1391 48 1 -0.4027 -1.8144 -1.2038 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330637004.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:09 Heat of formation + Delta-G solvation = -124.710785 kcal Electronic energy + Delta-G solvation = -28483.931857 eV Core-core repulsion = 24538.410830 eV Total energy + Delta-G solvation = -3945.521027 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72304 -39.40766 -38.13202 -36.88480 -36.25731 -33.77709 -33.11712 -31.73054 -31.23657 -29.76178 -28.90215 -25.84328 -24.99293 -23.31730 -23.21386 -21.82969 -21.63307 -20.61643 -19.95992 -18.79010 -17.62712 -17.28744 -16.76477 -16.34210 -15.76831 -15.68212 -15.24527 -14.90182 -14.69218 -14.53049 -14.23909 -13.79775 -13.69606 -13.44524 -13.29544 -12.87208 -12.69277 -12.61012 -12.59587 -12.31868 -12.13545 -11.85960 -11.70131 -11.53077 -11.38644 -11.06653 -10.98756 -10.68201 -10.66331 -10.46783 -10.28763 -10.17671 -10.04789 -9.87641 -9.28910 -9.20639 -9.11626 -8.51577 -8.40570 -7.83247 -6.02992 -4.11147 1.78157 2.65019 3.29474 3.36652 3.39318 3.63114 3.75557 3.98295 4.26148 4.34859 4.40899 4.64982 4.68199 4.79354 4.82480 4.94910 5.05125 5.09544 5.27496 5.29157 5.48289 5.60124 5.64186 5.68157 5.70265 5.73612 5.75231 5.86970 5.90698 6.00184 6.13012 6.26288 6.38831 6.59795 6.63239 6.76406 6.85997 6.98590 7.04464 7.17559 7.23844 7.26229 7.58638 7.82172 7.94530 7.99970 8.16129 8.34619 8.57523 8.92912 9.54410 11.02589 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.026396 B = 0.002616 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.499065 B =10699.206932 C =11344.464448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.062 3.938 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.130 4.130 13 C 0.046 3.954 14 N -0.565 5.565 15 C 0.493 3.507 16 O -0.525 6.525 17 C 0.515 3.485 18 O -0.515 6.515 19 N -0.700 5.700 20 C 0.141 3.859 21 H 0.094 0.906 22 C -0.126 4.126 23 C -0.108 4.108 24 C 0.102 3.898 25 H 0.056 0.944 26 O -0.569 6.569 27 C -0.147 4.147 28 C -0.129 4.129 29 C 0.107 3.893 30 H 0.264 0.736 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.148 0.852 36 H 0.056 0.944 37 H 0.413 0.587 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.378 0.622 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.048 0.952 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.920 -17.466 -5.039 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.078 0.922 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.151 4.151 12 C -0.168 4.168 13 C -0.076 4.076 14 N -0.297 5.297 15 C 0.274 3.726 16 O -0.403 6.403 17 C 0.298 3.702 18 O -0.392 6.392 19 N -0.353 5.353 20 C 0.037 3.963 21 H 0.112 0.888 22 C -0.164 4.164 23 C -0.146 4.146 24 C 0.043 3.957 25 H 0.074 0.926 26 O -0.375 6.375 27 C -0.186 4.186 28 C -0.168 4.168 29 C -0.013 4.013 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.164 0.836 36 H 0.074 0.926 37 H 0.250 0.750 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.225 0.775 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.066 0.934 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.932 -17.359 -4.447 21.529 hybrid contribution 0.440 1.290 -0.690 1.527 sum -11.492 -16.069 -5.137 20.413 Atomic orbital electron populations 1.69870 1.05775 1.26875 1.49520 1.25064 0.94916 0.99322 0.94793 0.86564 0.79811 0.83334 0.78132 1.20621 1.21189 1.19909 1.21096 0.92985 0.90033 1.51620 0.92245 1.18969 0.92670 0.92523 0.93673 0.95291 1.21668 0.98555 0.94385 1.00502 1.21826 0.98512 0.98624 0.97879 1.23119 0.95439 0.91210 0.97810 1.48460 1.04387 1.10224 1.66612 1.19759 0.83955 0.88333 0.80570 1.90760 1.61702 1.38606 1.49214 1.20811 0.82923 0.90581 0.75918 1.90246 1.59498 1.39995 1.49492 1.45904 1.06304 1.09852 1.73217 1.21110 0.94039 0.84190 0.96996 0.88793 1.21785 0.94763 0.97435 1.02386 1.21395 1.01900 0.95596 0.95691 1.21882 0.92321 0.84303 0.97147 0.92566 1.86512 1.83370 1.32626 1.34974 1.22217 0.97061 0.97738 1.01561 1.21887 1.02004 0.96017 0.96848 1.22495 0.98837 0.80799 0.99129 0.92637 0.93229 0.93103 0.92217 0.92519 0.83568 0.92579 0.75030 0.90094 0.90795 0.90734 0.90610 0.77531 0.90688 0.91376 0.91357 0.90683 0.93372 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.40 11.39 55.43 0.63 -24.77 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.06 8.56 -34.44 -0.29 -14.36 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.04 1.02 2.25 -91.66 -0.21 0.81 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -2.35 5.11 -26.69 -0.14 -2.48 16 12 C -0.13 -2.32 6.07 -26.83 -0.16 -2.48 16 13 C 0.05 0.82 6.24 -3.93 -0.02 0.79 16 14 N -0.57 -11.81 2.98 -173.54 -0.52 -12.32 16 15 C 0.49 9.87 7.76 -11.58 -0.09 9.78 16 16 O -0.53 -11.86 15.92 5.50 0.09 -11.77 16 17 C 0.51 8.25 7.78 -11.58 -0.09 8.16 16 18 O -0.51 -8.48 12.67 5.50 0.07 -8.41 16 19 N -0.70 -8.67 5.07 -54.24 -0.27 -8.94 16 20 C 0.14 1.37 2.46 -67.93 -0.17 1.21 16 21 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 22 C -0.13 -0.95 5.39 -26.73 -0.14 -1.09 16 23 C -0.11 -0.80 5.57 -26.73 -0.15 -0.95 16 24 C 0.10 0.72 3.47 -26.73 -0.09 0.63 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 O -0.57 -4.34 13.32 -35.23 -0.47 -4.81 16 27 C -0.15 -1.06 5.54 -26.73 -0.15 -1.21 16 28 C -0.13 -1.13 5.49 -26.73 -0.15 -1.28 16 29 C 0.11 2.61 5.39 -3.71 -0.02 2.59 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.15 2.53 3.72 -57.17 -0.21 2.32 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.41 4.84 8.09 -40.82 -0.33 4.51 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.38 1.36 9.08 45.56 0.41 1.77 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.12 3.44 5.15 -51.93 -0.27 3.17 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -31.51 374.53 -8.91 -40.42 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.10 Total: 7.10 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -1.97 Total: 1.73 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.16 Total: -46.04 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.31 Total: -24.99 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.51 -8.91 -40.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330637004.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.287 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds