Wall clock time and date at job start Tue Mar 31 2020 13:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99988 * 2 1 4 4 H 1.48500 * 109.47306 * 269.99970 * 3 2 1 5 5 H 1.48504 * 109.46868 * 30.00348 * 3 2 1 6 6 H 1.48504 * 109.47149 * 150.00037 * 3 2 1 7 7 C 1.37884 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99600 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99870 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.52103 * 299.91398 * 9 7 2 11 11 C 1.53041 * 109.49794 * 179.83710 * 9 7 2 12 12 C 1.53041 * 109.54138 * 178.67950 * 11 9 7 13 13 C 1.52761 * 109.37922 * 61.24014 * 12 11 9 14 14 N 1.46927 * 109.01048 * 305.58487 * 13 12 11 15 15 C 1.34772 * 120.63408 * 233.58656 * 14 13 12 16 16 O 1.21349 * 120.00243 * 184.12304 * 15 14 13 17 17 C 1.49455 * 119.99891 * 3.85471 * 15 14 13 18 18 O 1.21343 * 119.99927 * 353.81084 * 17 15 14 19 19 N 1.34776 * 120.00138 * 173.81657 * 17 15 14 20 20 C 1.46490 * 120.00141 * 179.97438 * 19 17 15 21 21 H 1.09000 * 109.47511 * 34.99937 * 20 19 17 22 22 C 1.53001 * 109.47159 * 155.00129 * 20 19 17 23 23 C 1.53001 * 109.47228 * 179.97438 * 22 20 19 24 24 C 1.53002 * 109.47114 * 300.00033 * 23 22 20 25 25 H 1.08997 * 109.47080 * 299.99648 * 24 23 22 26 26 O 1.42903 * 109.46741 * 179.97438 * 24 23 22 27 27 C 1.53001 * 109.47100 * 59.99888 * 24 23 22 28 28 C 1.52991 * 109.47193 * 300.00031 * 27 24 23 29 29 C 1.46924 * 118.73512 * 53.31011 * 14 13 12 30 30 H 0.96994 * 120.00101 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46066 * 298.70285 * 11 9 7 32 32 H 1.09007 * 109.45966 * 58.65821 * 11 9 7 33 33 H 1.08999 * 109.49777 * 181.31737 * 12 11 9 34 34 H 1.09000 * 109.49716 * 301.41374 * 12 11 9 35 35 H 1.09003 * 109.50324 * 185.70679 * 13 12 11 36 36 H 1.08998 * 109.43374 * 65.42502 * 13 12 11 37 37 H 0.97008 * 119.99461 * 0.02562 * 19 17 15 38 38 H 1.08994 * 109.47169 * 299.99899 * 22 20 19 39 39 H 1.09002 * 109.47001 * 60.00314 * 22 20 19 40 40 H 1.08997 * 109.46859 * 59.99816 * 23 22 20 41 41 H 1.08999 * 109.47122 * 179.97438 * 23 22 20 42 42 H 0.96708 * 113.99786 * 179.97438 * 26 24 23 43 43 H 1.09005 * 109.46718 * 60.00037 * 27 24 23 44 44 H 1.08997 * 109.46878 * 179.97438 * 27 24 23 45 45 H 1.09000 * 109.47391 * 300.00140 * 28 27 24 46 46 H 1.08999 * 109.47087 * 180.02562 * 28 27 24 47 47 H 1.09005 * 109.58601 * 66.43161 * 29 14 13 48 48 H 1.09001 * 109.58834 * 186.85149 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6249 -2.5582 0.8908 11 6 2.2450 -3.6628 -0.0029 12 6 1.4812 -4.9886 0.0303 13 6 0.6028 -5.0988 -1.2146 14 7 -0.2556 -3.9095 -1.3016 15 6 -1.5922 -4.0345 -1.4205 16 8 -2.2833 -3.0477 -1.5666 17 6 -2.2228 -5.3888 -1.3784 18 8 -1.5260 -6.3818 -1.3503 19 7 -3.5653 -5.5072 -1.3717 20 6 -4.1834 -6.8347 -1.3310 21 1 -3.5721 -7.5017 -0.7231 22 6 -5.5824 -6.7274 -0.7210 23 6 -6.2282 -8.1138 -0.6791 24 6 -6.3329 -8.6709 -2.1002 25 1 -6.9441 -8.0036 -2.7079 26 8 -6.9355 -9.9660 -2.0609 27 6 -4.9338 -8.7782 -2.7103 28 6 -4.2881 -7.3918 -2.7522 29 6 0.3705 -2.5813 -1.2502 30 1 -0.4850 0.8400 0.0004 31 1 2.8543 -3.6173 -0.9056 32 1 2.8892 -3.5928 0.8736 33 1 2.1900 -5.8164 0.0514 34 1 0.8528 -5.0242 0.9203 35 1 -0.0173 -5.9926 -1.1445 36 1 1.2350 -5.1587 -2.1004 37 1 -4.1223 -4.7133 -1.3946 38 1 -5.5079 -6.3302 0.2912 39 1 -6.1937 -6.0605 -1.3290 40 1 -5.6170 -8.7811 -0.0714 41 1 -7.2247 -8.0375 -0.2441 42 1 -7.0341 -10.3805 -2.9291 43 1 -4.3227 -9.4455 -2.1025 44 1 -5.0084 -9.1754 -3.7225 45 1 -4.8992 -6.7245 -3.3599 46 1 -3.2916 -7.4682 -3.1872 47 1 0.9835 -2.4317 -2.1391 48 1 -0.4027 -1.8144 -1.2038 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330637004.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:08 Heat of formation + Delta-G solvation = -147.814456 kcal Electronic energy + Delta-G solvation = -28484.933707 eV Core-core repulsion = 24538.410830 eV Total energy + Delta-G solvation = -3946.522877 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.05564 -40.42255 -39.32914 -38.54262 -37.08889 -35.31271 -34.47117 -33.44432 -31.86126 -31.59350 -29.74677 -27.52840 -26.78198 -24.60105 -23.85979 -23.51616 -22.67306 -21.68323 -21.08987 -20.32445 -18.86566 -18.23677 -18.12073 -17.97147 -17.13846 -16.95707 -16.56846 -16.42512 -15.76447 -15.49453 -15.47197 -15.33055 -14.83123 -14.71639 -14.57424 -14.43710 -14.20214 -13.87706 -13.51941 -13.33467 -13.22359 -13.17533 -12.90510 -12.84255 -12.49362 -12.40888 -12.30671 -12.17030 -12.14493 -11.76419 -11.72132 -11.58852 -11.26806 -11.15430 -10.99320 -10.74509 -10.56106 -10.31010 -9.94100 -9.55714 -8.12902 -6.29354 0.35492 1.32685 1.41812 1.42477 1.52753 2.15518 2.40682 2.55599 3.15040 3.24132 3.37174 3.59944 3.71898 4.02616 4.11177 4.14926 4.18855 4.23325 4.29471 4.34216 4.39395 4.46117 4.57073 4.63081 4.73245 4.81129 4.82277 4.91929 4.98533 5.04811 5.06592 5.12247 5.14855 5.16350 5.22514 5.25513 5.28365 5.38757 5.41545 5.55386 5.57597 5.83164 5.93017 6.01261 6.29239 6.45011 6.75205 6.83158 6.92589 6.98721 7.40422 8.91156 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.026396 B = 0.002616 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.499065 B =10699.206932 C =11344.464448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.011 3.989 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.039 3.961 10 H -0.010 1.010 11 C -0.107 4.107 12 C -0.123 4.123 13 C 0.045 3.955 14 N -0.573 5.573 15 C 0.484 3.516 16 O -0.559 6.559 17 C 0.524 3.476 18 O -0.518 6.518 19 N -0.683 5.683 20 C 0.139 3.861 21 H 0.084 0.916 22 C -0.118 4.118 23 C -0.107 4.107 24 C 0.104 3.896 25 H 0.069 0.931 26 O -0.586 6.586 27 C -0.140 4.140 28 C -0.125 4.125 29 C 0.120 3.880 30 H 0.262 0.738 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.161 0.839 36 H 0.069 0.931 37 H 0.418 0.582 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.394 0.606 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.057 0.943 47 H 0.042 0.958 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.090 -19.058 -5.660 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.188 4.188 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.020 3.980 10 H 0.008 0.992 11 C -0.145 4.145 12 C -0.161 4.161 13 C -0.075 4.075 14 N -0.305 5.305 15 C 0.266 3.734 16 O -0.439 6.439 17 C 0.305 3.695 18 O -0.397 6.397 19 N -0.334 5.334 20 C 0.036 3.964 21 H 0.102 0.898 22 C -0.156 4.156 23 C -0.145 4.145 24 C 0.046 3.954 25 H 0.087 0.913 26 O -0.394 6.394 27 C -0.178 4.178 28 C -0.163 4.163 29 C -0.002 4.002 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.065 0.935 35 H 0.177 0.823 36 H 0.088 0.912 37 H 0.255 0.745 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.244 0.756 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.117 -19.002 -5.078 23.102 hybrid contribution 0.430 1.738 -0.499 1.859 sum -11.688 -17.263 -5.577 21.581 Atomic orbital electron populations 1.70044 1.07329 1.27438 1.50494 1.25884 0.95648 1.02870 0.94446 0.85532 0.78696 0.78991 0.78312 1.19989 1.21139 1.18917 1.21481 0.93315 0.91300 1.51318 0.91972 1.18904 0.93085 0.93886 0.92133 0.99210 1.21566 0.97768 0.94228 1.00940 1.21797 0.98767 0.98150 0.97376 1.23356 0.95483 0.90159 0.98461 1.48484 1.05328 1.09800 1.66842 1.20508 0.83591 0.89905 0.79351 1.90731 1.62375 1.40330 1.50428 1.19937 0.84104 0.88406 0.77007 1.90217 1.59842 1.39151 1.50472 1.45904 1.04871 1.11413 1.71201 1.21352 0.94877 0.82223 0.97992 0.89821 1.21738 0.93325 0.98084 1.02458 1.21386 1.01918 0.95085 0.96147 1.21863 0.92241 0.84490 0.96847 0.91330 1.86475 1.83321 1.32880 1.36736 1.22158 0.96885 0.96363 1.02428 1.21836 1.01454 0.97236 0.95809 1.21954 0.97585 0.82087 0.98530 0.92918 0.92525 0.92817 0.88341 0.93458 0.82329 0.91250 0.74506 0.90098 0.89372 0.91575 0.90041 0.75583 0.91660 0.89747 0.90341 0.92404 0.93923 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.58 11.39 21.45 0.24 -54.33 16 2 C 0.01 0.62 5.30 84.66 0.45 1.07 16 3 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.54 -29.60 8.56 25.60 0.22 -29.39 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.04 2.01 2.25 -11.47 -0.03 1.98 16 10 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 11 C -0.11 -4.38 5.11 30.62 0.16 -4.23 16 12 C -0.12 -4.17 6.07 30.53 0.19 -3.99 16 13 C 0.05 1.57 6.24 86.22 0.54 2.11 16 14 N -0.57 -24.32 2.98 -821.32 -2.45 -26.77 16 15 C 0.48 19.76 7.76 87.27 0.68 20.43 16 16 O -0.56 -26.19 15.92 -3.24 -0.05 -26.25 16 17 C 0.52 16.56 7.78 87.27 0.68 17.24 16 18 O -0.52 -16.47 12.67 -3.23 -0.04 -16.51 16 19 N -0.68 -16.31 5.07 -443.88 -2.25 -18.56 16 20 C 0.14 2.51 2.46 45.00 0.11 2.62 16 21 H 0.08 1.74 7.58 -2.39 -0.02 1.72 16 22 C -0.12 -1.56 5.39 30.60 0.16 -1.40 16 23 C -0.11 -1.38 5.57 30.60 0.17 -1.21 16 24 C 0.10 1.22 3.47 30.60 0.11 1.33 16 25 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 26 O -0.59 -7.59 13.32 -148.98 -1.98 -9.58 16 27 C -0.14 -1.71 5.54 30.59 0.17 -1.54 16 28 C -0.12 -1.97 5.49 30.59 0.17 -1.80 16 29 C 0.12 6.07 5.39 86.36 0.47 6.53 16 30 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.16 5.22 3.72 -85.34 -0.32 4.90 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.42 9.49 8.09 -92.70 -0.75 8.74 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.39 1.87 9.08 -74.05 -0.67 1.20 16 43 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.04 2.14 8.14 -2.38 -0.02 2.12 16 48 H 0.09 5.03 5.15 -2.39 -0.01 5.02 16 Total: -1.00 -70.13 374.53 -1.02 -71.15 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -0.75 Total: 25.11 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 4.23 Total: 9.76 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -4.45 Total: -99.66 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -2.08 Total: -52.34 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -70.13 -1.02 -71.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330637004.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.659 kcal (2) G-P(sol) polarization free energy of solvation -70.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds