Wall clock time and date at job start Tue Mar 31 2020 13:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00358 * 2 1 4 4 H 1.48496 * 109.47261 * 264.71802 * 3 2 1 5 5 H 1.48503 * 109.47233 * 24.72235 * 3 2 1 6 6 H 1.48506 * 109.47161 * 144.72153 * 3 2 1 7 7 C 1.37879 * 119.99754 * 179.71883 * 2 1 3 8 8 H 1.08005 * 120.00232 * 186.05414 * 7 2 1 9 9 C 1.50704 * 120.00123 * 6.06405 * 7 2 1 10 10 H 1.09005 * 109.49357 * 306.57703 * 9 7 2 11 11 C 1.53036 * 109.49982 * 186.50842 * 9 7 2 12 12 C 1.53043 * 109.53870 * 178.67789 * 11 9 7 13 13 C 1.53190 * 109.30851 * 61.36619 * 12 11 9 14 14 N 1.46924 * 108.77647 * 305.36385 * 13 12 11 15 15 C 1.34788 * 120.63153 * 233.62966 * 14 13 12 16 16 O 1.21352 * 119.99854 * 171.27714 * 15 14 13 17 17 C 1.49445 * 119.99983 * 351.28327 * 15 14 13 18 18 O 1.21355 * 119.99725 * 353.46355 * 17 15 14 19 19 N 1.34769 * 119.99985 * 173.46115 * 17 15 14 20 20 C 1.46505 * 120.00055 * 180.02562 * 19 17 15 21 21 C 1.52999 * 109.47312 * 180.02562 * 20 19 17 22 22 H 1.08997 * 109.48410 * 59.97107 * 21 20 19 23 23 C 1.53090 * 109.48124 * 180.02562 * 21 20 19 24 24 C 1.53185 * 109.16232 * 177.58834 * 23 21 20 25 25 C 1.53177 * 109.03360 * 303.01669 * 24 23 21 26 26 C 1.53090 * 109.16351 * 56.98381 * 25 24 23 27 27 O 1.42907 * 109.41311 * 302.38512 * 26 25 24 28 28 C 1.46920 * 118.74120 * 53.61114 * 14 13 12 29 29 H 0.97006 * 119.99963 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.45975 * 298.70009 * 11 9 7 31 31 H 1.09006 * 109.45995 * 58.67298 * 11 9 7 32 32 H 1.08999 * 109.49714 * 181.31300 * 12 11 9 33 33 H 1.09000 * 109.49606 * 301.42052 * 12 11 9 34 34 H 1.09002 * 109.58959 * 65.15474 * 13 12 11 35 35 H 1.09002 * 109.58653 * 185.43850 * 13 12 11 36 36 H 0.96999 * 120.00373 * 0.02562 * 19 17 15 37 37 H 1.09010 * 109.46931 * 299.99916 * 20 19 17 38 38 H 1.08997 * 109.47450 * 59.99637 * 20 19 17 39 39 H 1.08999 * 109.52187 * 297.48765 * 23 21 20 40 40 H 1.09001 * 109.52658 * 57.68142 * 23 21 20 41 41 H 1.09000 * 109.54463 * 62.88689 * 24 23 21 42 42 H 1.09002 * 109.53745 * 183.06120 * 24 23 21 43 43 H 1.09003 * 109.51890 * 176.88528 * 25 24 23 44 44 H 1.09001 * 109.52217 * 297.00871 * 25 24 23 45 45 H 1.09003 * 109.48173 * 62.37028 * 26 25 24 46 46 H 1.09007 * 109.47997 * 182.39512 * 26 25 24 47 47 H 1.09001 * 109.59177 * 186.60397 * 28 14 13 48 48 H 1.09001 * 109.59053 * 66.17811 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6083 1.9819 -1.3941 5 1 1.3954 2.6823 0.5855 6 1 3.4865 1.4748 0.8086 7 6 2.0044 -1.1941 0.0059 8 1 3.0799 -1.1963 0.1045 9 6 1.2572 -2.4962 -0.1256 10 1 0.4725 -2.5432 0.6296 11 6 2.2267 -3.6637 0.0717 12 6 1.4628 -4.9860 -0.0289 13 6 0.8390 -5.1058 -1.4229 14 7 0.0185 -3.9140 -1.6779 15 6 -1.2717 -4.0349 -2.0487 16 8 -1.9821 -3.0525 -2.1028 17 6 -1.8274 -5.3788 -2.3930 18 8 -1.0918 -6.3420 -2.4543 19 7 -3.1455 -5.5210 -2.6353 20 6 -3.6904 -6.8386 -2.9723 21 6 -5.1993 -6.7239 -3.1982 22 1 -5.3927 -6.0303 -4.0164 23 6 -5.7689 -8.1007 -3.5497 24 6 -7.2877 -7.9892 -3.7150 25 6 -7.8903 -7.4226 -2.4257 26 6 -7.2387 -6.0720 -2.1176 27 8 -5.8240 -6.2414 -2.0069 28 6 0.6310 -2.5878 -1.5207 29 1 -0.4850 0.8401 -0.0004 30 1 2.9973 -3.6300 -0.6985 31 1 2.6920 -3.5873 1.0545 32 1 2.1497 -5.8164 0.1348 33 1 0.6759 -5.0098 0.7250 34 1 1.6281 -5.1733 -2.1719 35 1 0.2148 -5.9983 -1.4685 36 1 -3.7335 -4.7511 -2.5866 37 1 -3.2143 -7.2070 -3.8811 38 1 -3.4968 -7.5320 -2.1540 39 1 -5.3259 -8.4510 -4.4819 40 1 -5.5404 -8.8047 -2.7495 41 1 -7.5160 -7.3236 -4.5475 42 1 -7.7065 -8.9761 -3.9119 43 1 -8.9643 -7.2880 -2.5541 44 1 -7.7056 -8.1135 -1.6031 45 1 -7.4590 -5.3702 -2.9220 46 1 -7.6331 -5.6840 -1.1784 47 1 -0.1324 -1.8174 -1.6299 48 1 1.4032 -2.4498 -2.2776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330874765.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:09 Heat of formation + Delta-G solvation = -142.081588 kcal Electronic energy + Delta-G solvation = -28258.477673 eV Core-core repulsion = 24312.203392 eV Total energy + Delta-G solvation = -3946.274281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.94572 -40.53189 -39.64845 -38.51728 -36.28807 -35.12896 -34.57591 -33.46588 -32.58953 -31.65512 -28.70021 -27.31686 -26.71394 -25.23309 -24.12490 -23.51739 -22.91159 -21.71509 -21.09959 -20.45812 -18.87402 -18.25339 -17.95066 -17.58195 -17.03454 -16.90281 -16.77328 -16.40917 -16.08577 -15.55682 -15.39684 -15.33531 -15.15480 -14.85597 -14.63947 -14.43612 -14.10229 -13.95500 -13.76280 -13.56873 -13.49784 -13.20243 -12.99111 -12.83936 -12.54125 -12.32905 -12.22585 -12.13713 -11.99397 -11.76355 -11.67370 -11.60946 -11.27264 -11.19757 -10.90725 -10.54710 -10.45733 -10.37888 -10.07609 -9.55944 -8.13413 -6.27276 0.35736 1.33488 1.42373 1.43412 1.52748 2.14099 2.41799 2.53446 2.74234 3.17098 3.32503 3.63522 3.89852 3.93435 4.03105 4.11775 4.13363 4.18211 4.24074 4.32699 4.47110 4.53277 4.58690 4.67206 4.69220 4.74010 4.79597 4.81666 4.89040 4.93475 5.04101 5.07129 5.11733 5.15015 5.19731 5.22417 5.25271 5.34213 5.40211 5.48259 5.58056 5.83268 5.91042 5.98299 6.24523 6.30379 6.40116 6.71901 6.85772 6.97712 7.41961 8.93349 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019921 B = 0.002671 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.185926 B =10482.369426 C =11456.711946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.038 3.962 10 H -0.008 1.008 11 C -0.106 4.106 12 C -0.127 4.127 13 C 0.073 3.927 14 N -0.576 5.576 15 C 0.485 3.515 16 O -0.559 6.559 17 C 0.520 3.480 18 O -0.523 6.523 19 N -0.685 5.685 20 C 0.124 3.876 21 C 0.078 3.922 22 H 0.074 0.926 23 C -0.144 4.144 24 C -0.121 4.121 25 C -0.154 4.154 26 C 0.053 3.947 27 O -0.402 6.402 28 C 0.126 3.874 29 H 0.261 0.739 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.045 0.955 34 H 0.077 0.923 35 H 0.138 0.862 36 H 0.416 0.584 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.096 0.904 47 H 0.066 0.934 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.262 -19.074 -8.832 24.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.188 4.188 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.018 3.982 10 H 0.011 0.989 11 C -0.144 4.144 12 C -0.165 4.165 13 C -0.048 4.048 14 N -0.308 5.308 15 C 0.267 3.733 16 O -0.439 6.439 17 C 0.301 3.699 18 O -0.402 6.402 19 N -0.336 5.336 20 C 0.002 3.998 21 C 0.020 3.980 22 H 0.092 0.908 23 C -0.182 4.182 24 C -0.158 4.158 25 C -0.192 4.192 26 C -0.023 4.023 27 O -0.322 6.322 28 C 0.005 3.995 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.155 0.845 36 H 0.253 0.747 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.114 0.886 47 H 0.084 0.916 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.167 -19.108 -8.739 24.796 hybrid contribution -0.157 1.794 0.121 1.805 sum -13.324 -17.314 -8.618 23.485 Atomic orbital electron populations 1.70134 1.07522 1.27446 1.50276 1.25892 0.95534 1.02921 0.94487 0.85585 0.78648 0.78982 0.78554 1.19827 1.21355 1.18798 1.21456 0.93802 0.91387 1.50721 0.91847 1.18904 0.93898 0.93931 0.91430 0.98935 1.21553 0.97885 0.93963 1.00962 1.21941 0.99789 0.98484 0.96250 1.22908 0.96361 0.88452 0.97056 1.48433 1.09812 1.09792 1.62724 1.20572 0.83244 0.89820 0.79623 1.90743 1.58456 1.40675 1.53996 1.19855 0.83714 0.88082 0.78288 1.90449 1.57509 1.40598 1.51601 1.45728 1.06917 1.13423 1.67556 1.21772 0.91943 0.83245 1.02842 1.22419 0.90510 0.96947 0.88101 0.90769 1.22116 0.96871 0.95595 1.03581 1.21600 0.94280 1.02482 0.97488 1.22180 1.01174 0.97173 0.98678 1.22760 0.79817 0.96988 1.02782 1.87972 1.21745 1.86435 1.36044 1.21873 0.96582 0.81746 0.99327 0.93044 0.92123 0.92837 0.88007 0.93576 0.90493 0.84526 0.74718 0.87802 0.90451 0.88733 0.90876 0.91126 0.89976 0.89410 0.91581 0.92436 0.88625 0.91570 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.93 12.12 21.45 0.26 -55.67 16 2 C 0.01 0.65 5.29 84.66 0.45 1.10 16 3 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -29.75 8.48 25.60 0.22 -29.53 16 8 H 0.06 3.38 7.76 -2.91 -0.02 3.36 16 9 C 0.04 1.95 2.11 -11.46 -0.02 1.92 16 10 H -0.01 -0.46 8.09 -2.38 -0.02 -0.48 16 11 C -0.11 -4.32 5.11 30.62 0.16 -4.16 16 12 C -0.13 -4.30 6.08 30.67 0.19 -4.11 16 13 C 0.07 2.52 5.98 86.36 0.52 3.03 16 14 N -0.58 -24.66 2.97 -820.48 -2.44 -27.10 16 15 C 0.48 20.48 7.73 87.27 0.67 21.15 16 16 O -0.56 -27.41 15.93 -3.25 -0.05 -27.46 16 17 C 0.52 17.33 7.74 87.27 0.68 18.00 16 18 O -0.52 -17.22 13.18 -3.26 -0.04 -17.26 16 19 N -0.68 -18.35 5.44 -464.40 -2.53 -20.87 16 20 C 0.12 2.39 5.37 86.38 0.46 2.85 16 21 C 0.08 1.23 2.73 30.62 0.08 1.31 16 22 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 23 C -0.14 -1.56 5.42 30.69 0.17 -1.39 16 24 C -0.12 -1.11 6.03 30.72 0.19 -0.92 16 25 C -0.15 -1.66 6.14 30.68 0.19 -1.47 16 26 C 0.05 0.78 6.84 72.01 0.49 1.27 16 27 O -0.40 -8.18 10.15 -148.98 -1.51 -9.69 16 28 C 0.13 6.36 5.51 86.36 0.48 6.83 16 29 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 30 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.14 4.52 4.32 -47.37 -0.20 4.32 16 36 H 0.42 11.47 7.84 -92.71 -0.73 10.75 16 37 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 47 H 0.07 3.89 5.88 -2.39 -0.01 3.88 16 48 H 0.05 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -70.99 377.81 0.65 -70.33 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.03 Total: 25.44 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 4.91 Total: 15.88 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -4.70 Total: -103.65 kcal Atomic # 8 Polarization: -52.81 SS G_CDS: -1.61 Total: -54.42 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -70.99 0.65 -70.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330874765.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.748 kcal (2) G-P(sol) polarization free energy of solvation -70.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds