Wall clock time and date at job start Tue Mar 31 2020 13:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00214 * 2 1 4 4 H 1.48496 * 109.46939 * 274.99211 * 3 2 1 5 5 H 1.48506 * 109.46839 * 34.99038 * 3 2 1 6 6 H 1.48499 * 109.47340 * 154.98934 * 3 2 1 7 7 C 1.37885 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99584 * 186.40375 * 7 2 1 9 9 C 1.50694 * 120.00068 * 6.40304 * 7 2 1 10 10 H 1.08994 * 109.50074 * 298.20514 * 9 7 2 11 11 C 1.53037 * 109.49551 * 178.14000 * 9 7 2 12 12 C 1.53044 * 109.53995 * 178.68363 * 11 9 7 13 13 C 1.53197 * 109.30968 * 61.36305 * 12 11 9 14 14 N 1.46922 * 108.78069 * 305.36899 * 13 12 11 15 15 C 1.34777 * 120.63495 * 233.58699 * 14 13 12 16 16 O 1.21341 * 120.00390 * 184.99233 * 15 14 13 17 17 C 1.49458 * 119.99634 * 4.99351 * 15 14 13 18 18 O 1.21344 * 119.99434 * 273.89981 * 17 15 14 19 19 N 1.34776 * 120.00202 * 93.90112 * 17 15 14 20 20 C 1.46930 * 120.62759 * 355.42253 * 19 17 15 21 21 C 1.53188 * 108.77172 * 126.41463 * 20 19 17 22 22 C 1.53039 * 109.31448 * 54.63663 * 21 20 19 23 23 C 1.53080 * 109.65559 * 298.69452 * 22 21 20 24 24 H 1.08997 * 109.38829 * 301.28166 * 23 22 21 25 25 C 1.53001 * 109.62055 * 181.17213 * 23 22 21 26 26 O 1.42899 * 109.46861 * 175.11014 * 25 23 22 27 27 C 1.46923 * 120.63204 * 175.44548 * 19 17 15 28 28 C 1.46930 * 118.73687 * 53.85512 * 14 13 12 29 29 H 0.96994 * 120.00068 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46471 * 58.66546 * 11 9 7 31 31 H 1.08997 * 109.46159 * 298.70074 * 11 9 7 32 32 H 1.09004 * 109.49922 * 301.42149 * 12 11 9 33 33 H 1.08991 * 109.52883 * 181.33334 * 12 11 9 34 34 H 1.08995 * 109.58883 * 185.57765 * 13 12 11 35 35 H 1.09001 * 109.58703 * 65.15853 * 13 12 11 36 36 H 1.08998 * 109.58420 * 246.19908 * 20 19 17 37 37 H 1.08995 * 109.58901 * 6.48447 * 20 19 17 38 38 H 1.09003 * 109.49497 * 174.58280 * 21 20 19 39 39 H 1.08994 * 109.50021 * 294.68064 * 21 20 19 40 40 H 1.09001 * 109.46247 * 58.65251 * 22 21 20 41 41 H 1.09003 * 109.46053 * 178.62940 * 22 21 20 42 42 H 1.08997 * 109.46865 * 295.10625 * 25 23 22 43 43 H 1.09000 * 109.47215 * 55.11179 * 25 23 22 44 44 H 0.96703 * 114.00121 * 179.97438 * 26 25 23 45 45 H 1.09000 * 109.58276 * 353.37432 * 27 19 17 46 46 H 1.08996 * 109.58643 * 113.65432 * 27 19 17 47 47 H 1.08997 * 109.58628 * 65.93340 * 28 14 13 48 48 H 1.09001 * 109.58640 * 186.35481 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1072 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4120 0.5919 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1970 0.1049 9 6 1.2581 -2.4952 -0.1444 10 1 0.5712 -2.6158 0.6932 11 6 2.2544 -3.6567 -0.1594 12 6 1.4953 -4.9807 -0.2735 13 6 0.7083 -5.0018 -1.5877 14 7 -0.1472 -3.8088 -1.6459 15 6 -1.4715 -3.9235 -1.8685 16 8 -2.1524 -2.9284 -2.0045 17 6 -2.1014 -5.2766 -1.9477 18 8 -2.1178 -5.8773 -3.0019 19 7 -2.6511 -5.8294 -0.8483 20 6 -2.5514 -5.1601 0.4558 21 6 -3.9586 -5.0119 1.0428 22 6 -4.6341 -6.3844 1.0908 23 6 -4.7592 -6.9465 -0.3276 24 1 -5.3401 -6.2570 -0.9401 25 6 -5.4608 -8.3053 -0.2816 26 8 -5.6779 -8.7746 -1.6138 27 6 -3.3611 -7.1131 -0.9311 28 6 0.4694 -2.4877 -1.4627 29 1 -0.4850 0.8400 -0.0004 30 1 2.8347 -3.6493 0.7632 31 1 2.9257 -3.5484 -1.0112 32 1 0.8057 -5.0783 0.5650 33 1 2.2036 -5.8090 -0.2603 34 1 0.0891 -5.8978 -1.6285 35 1 1.4015 -4.9957 -2.4289 36 1 -1.9364 -5.7588 1.1277 37 1 -2.1011 -4.1758 0.3279 38 1 -3.8909 -4.6044 2.0515 39 1 -4.5450 -4.3395 0.4168 40 1 -4.0343 -7.0634 1.6968 41 1 -5.6265 -6.2855 1.5306 42 1 -4.8370 -9.0182 0.2575 43 1 -6.4188 -8.2026 0.2280 44 1 -6.1196 -9.6335 -1.6612 45 1 -3.4473 -7.4162 -1.9746 46 1 -2.8108 -7.8716 -0.3745 47 1 1.1434 -2.2807 -2.2939 48 1 -0.3077 -1.7244 -1.4210 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333342315.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:02 Heat of formation + Delta-G solvation = -129.407756 kcal Electronic energy + Delta-G solvation = -29490.031071 eV Core-core repulsion = 25544.306368 eV Total energy + Delta-G solvation = -3945.724703 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.72307 -39.02768 -37.81642 -36.74211 -36.56338 -33.46956 -33.23144 -31.87746 -31.59085 -29.91276 -27.08605 -25.91485 -25.15250 -24.85881 -22.45169 -22.23854 -21.91191 -20.36283 -19.32785 -18.43294 -17.58848 -17.37656 -16.72049 -16.21423 -16.05566 -15.62234 -14.85011 -14.64596 -14.55933 -14.27792 -14.13581 -14.00005 -13.80286 -13.63833 -13.40182 -12.99198 -12.87801 -12.74490 -12.68236 -12.20762 -12.02800 -11.92534 -11.32257 -11.17777 -11.06090 -11.01628 -10.95263 -10.83786 -10.69820 -10.56394 -10.43818 -10.30505 -10.29502 -10.00303 -9.31458 -9.20084 -8.88052 -8.74927 -8.45529 -7.94162 -6.07690 -4.13865 2.44619 2.50833 3.07350 3.28325 3.36592 3.38093 3.70494 3.86427 4.38600 4.47406 4.53088 4.61724 4.79984 4.82895 4.99606 5.16389 5.22017 5.23492 5.25717 5.30735 5.40100 5.41582 5.43646 5.61000 5.63002 5.76350 5.81866 5.91893 5.93446 5.97523 6.09423 6.18691 6.23278 6.39938 6.49522 6.55822 6.76076 6.87585 6.99724 7.07970 7.21445 7.33701 7.50813 7.76090 7.87473 7.99308 8.01489 8.28378 8.50005 8.89220 9.51478 10.98957 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.020063 B = 0.003419 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.296886 B = 8186.940715 C = 8570.448628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.043 3.957 10 H 0.031 0.969 11 C -0.111 4.111 12 C -0.131 4.131 13 C 0.108 3.892 14 N -0.588 5.588 15 C 0.507 3.493 16 O -0.512 6.512 17 C 0.519 3.481 18 O -0.523 6.523 19 N -0.598 5.598 20 C 0.103 3.897 21 C -0.133 4.133 22 C -0.112 4.112 23 C -0.105 4.105 24 H 0.084 0.916 25 C 0.084 3.916 26 O -0.571 6.571 27 C 0.120 3.880 28 C 0.111 3.889 29 H 0.264 0.736 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.379 0.621 45 H 0.100 0.900 46 H 0.068 0.932 47 H 0.049 0.951 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.796 -17.634 4.069 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.023 3.977 10 H 0.049 0.951 11 C -0.149 4.149 12 C -0.170 4.170 13 C -0.016 4.016 14 N -0.322 5.322 15 C 0.289 3.711 16 O -0.387 6.387 17 C 0.303 3.697 18 O -0.398 6.398 19 N -0.333 5.333 20 C -0.019 4.019 21 C -0.171 4.171 22 C -0.150 4.150 23 C -0.124 4.124 24 H 0.102 0.898 25 C 0.006 3.994 26 O -0.376 6.376 27 C -0.002 4.002 28 C -0.008 4.008 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.225 0.775 45 H 0.118 0.882 46 H 0.086 0.914 47 H 0.067 0.933 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.010 -16.695 3.270 18.804 hybrid contribution 0.140 0.363 0.184 0.431 sum -7.871 -16.332 3.454 18.455 Atomic orbital electron populations 1.69896 1.05790 1.26990 1.49054 1.25041 0.94864 0.99302 0.94691 0.86588 0.79889 0.83520 0.78090 1.20622 1.21220 1.19885 1.21064 0.93565 0.90203 1.51181 0.92202 1.19032 0.93051 0.92639 0.92931 0.95077 1.21642 0.98622 0.93831 1.00812 1.21948 0.99090 0.99395 0.96531 1.21712 0.93968 0.87002 0.98891 1.48586 1.05731 1.10072 1.67760 1.19993 0.83586 0.88799 0.78764 1.90817 1.62063 1.36669 1.49117 1.20752 0.78827 0.86194 0.83938 1.90745 1.58681 1.61674 1.28720 1.48140 1.54652 1.22307 1.08245 1.21868 0.97725 0.98898 0.83446 1.21879 0.95917 0.97193 1.02152 1.21521 1.01273 0.96928 0.95231 1.21553 0.96610 0.96451 0.97812 0.89774 1.22146 0.98547 0.94872 0.83822 1.86545 1.82771 1.40866 1.27402 1.21608 0.90712 0.84147 1.03705 1.22510 0.98782 0.80804 0.98741 0.92599 0.92746 0.92971 0.92101 0.91909 0.91504 0.91214 0.90621 0.88833 0.89882 0.90847 0.91412 0.91289 0.93392 0.93283 0.77465 0.88216 0.91357 0.93286 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.70 11.56 55.43 0.64 -24.06 16 2 C 0.06 1.72 5.23 -17.82 -0.09 1.62 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -13.56 8.58 -34.44 -0.30 -13.86 16 8 H 0.06 1.53 7.75 -52.49 -0.41 1.13 16 9 C 0.04 0.99 2.24 -91.43 -0.21 0.79 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.09 5.10 -26.69 -0.14 -2.23 16 12 C -0.13 -2.02 6.08 -26.61 -0.16 -2.18 16 13 C 0.11 1.77 6.35 -3.71 -0.02 1.75 16 14 N -0.59 -11.94 2.97 -173.01 -0.51 -12.45 16 15 C 0.51 10.82 5.47 -11.58 -0.06 10.76 16 16 O -0.51 -12.77 16.53 5.50 0.09 -12.68 16 17 C 0.52 9.74 5.48 -11.58 -0.06 9.68 16 18 O -0.52 -10.87 16.52 5.50 0.09 -10.78 16 19 N -0.60 -8.86 2.97 -173.28 -0.52 -9.38 16 20 C 0.10 1.37 6.36 -3.71 -0.02 1.34 16 21 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 22 C -0.11 -0.96 5.17 -26.67 -0.14 -1.10 16 23 C -0.10 -1.07 2.58 -90.48 -0.23 -1.30 16 24 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 25 C 0.08 0.65 6.44 37.16 0.24 0.89 16 26 O -0.57 -5.20 13.30 -35.23 -0.47 -5.67 16 27 C 0.12 1.48 5.53 -3.71 -0.02 1.46 16 28 C 0.11 2.62 5.40 -3.48 -0.02 2.60 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.03 6.31 -51.93 -0.33 0.70 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.55 6.31 -51.93 -0.33 1.22 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.38 1.60 9.12 45.56 0.42 2.02 16 45 H 0.10 1.46 6.87 -51.93 -0.36 1.10 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 48 H 0.12 3.28 5.29 -51.93 -0.27 3.01 16 LS Contribution 377.04 15.07 5.68 5.68 Total: -1.00 -32.80 377.04 -8.59 -41.39 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.18 Total: 3.61 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -1.40 Total: 8.60 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.39 Total: -45.89 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.29 Total: -29.13 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.80 -8.59 -41.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333342315.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.015 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds