Wall clock time and date at job start Tue Mar 31 2020 14:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47292 * 2 1 4 4 O 1.42898 * 110.77710 * 298.21510 * 3 2 1 5 5 C 1.55160 * 110.72301 * 174.97124 * 3 2 1 6 6 C 1.55129 * 101.48704 * 205.96928 * 5 3 2 7 7 N 1.47421 * 104.72012 * 37.29994 * 6 5 3 8 8 C 1.34779 * 125.65198 * 155.81941 * 7 6 5 9 9 O 1.21346 * 120.00293 * 179.68895 * 8 7 6 10 10 C 1.49453 * 119.99280 * 359.68678 * 8 7 6 11 11 O 1.21349 * 120.00545 * 6.89333 * 10 8 7 12 12 N 1.34777 * 119.99654 * 186.89550 * 10 8 7 13 13 C 1.46921 * 120.63436 * 357.51663 * 12 10 8 14 14 C 1.53184 * 108.78087 * 126.38945 * 13 12 10 15 15 C 1.53045 * 109.31346 * 54.63573 * 14 13 12 16 16 C 1.53035 * 109.53382 * 298.63436 * 15 14 13 17 17 H 1.08992 * 109.52939 * 301.39811 * 16 15 14 18 18 C 1.50707 * 109.49495 * 181.31628 * 16 15 14 19 19 H 1.07996 * 119.99823 * 0.16058 * 18 16 15 20 20 C 1.37876 * 120.00079 * 180.16335 * 18 16 15 21 21 N 1.31512 * 120.00172 * 179.97438 * 20 18 16 22 22 Si 1.86808 * 120.00073 * 0.02562 * 20 18 16 23 23 H 1.48506 * 109.46915 * 89.99773 * 22 20 18 24 24 H 1.48493 * 109.47158 * 210.00030 * 22 20 18 25 25 H 1.48499 * 109.46604 * 330.00072 * 22 20 18 26 26 C 1.46931 * 120.63006 * 177.51309 * 12 10 8 27 27 C 1.47021 * 108.70654 * 335.54918 * 7 6 5 28 28 H 1.09000 * 109.47224 * 299.99903 * 1 2 3 29 29 H 1.08997 * 109.47176 * 60.00456 * 1 2 3 30 30 H 1.09009 * 109.46753 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47625 * 239.99454 * 2 1 3 32 32 H 1.09009 * 109.46959 * 120.00164 * 2 1 3 33 33 H 0.96697 * 113.99861 * 61.78945 * 4 3 2 34 34 H 1.08998 * 111.00238 * 324.21406 * 5 3 2 35 35 H 1.09001 * 110.99805 * 88.01924 * 5 3 2 36 36 H 1.08999 * 110.49444 * 278.45741 * 6 5 3 37 37 H 1.08994 * 110.33906 * 156.05974 * 6 5 3 38 38 H 1.09005 * 109.58618 * 6.59890 * 13 12 10 39 39 H 1.09004 * 109.70356 * 246.25239 * 13 12 10 40 40 H 1.08997 * 109.49644 * 294.68111 * 14 13 12 41 41 H 1.09002 * 109.52801 * 174.60342 * 14 13 12 42 42 H 1.08997 * 109.45613 * 178.61762 * 15 14 13 43 43 H 1.08996 * 109.45717 * 58.65849 * 15 14 13 44 44 H 0.97001 * 120.00320 * 179.97438 * 21 20 18 45 45 H 1.08989 * 109.58729 * 113.82328 * 26 12 10 46 46 H 1.09001 * 109.58605 * 353.39423 * 26 12 10 47 47 H 1.08999 * 109.88671 * 120.70484 * 27 7 6 48 48 H 1.08994 * 109.88701 * 241.71999 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6134 2.1310 -1.1773 5 6 3.5859 1.4782 0.1272 6 6 3.8107 2.8705 0.7733 7 7 2.6887 3.0316 1.7159 8 6 2.6854 3.8259 2.8048 9 8 1.6995 3.8849 3.5098 10 6 3.8960 4.6340 3.1438 11 8 4.8342 4.6732 2.3751 12 7 3.9457 5.3193 4.3033 13 6 2.7969 5.3256 5.2190 14 6 3.2715 4.8899 6.6088 15 6 4.4323 5.7841 7.0506 16 6 5.5984 5.6299 6.0716 17 1 5.9107 4.5863 6.0384 18 6 6.7526 6.4862 6.5253 19 1 6.6646 7.0790 7.4237 20 6 7.9208 6.5127 5.7934 21 7 8.9278 7.2603 6.1891 22 14 8.0726 5.4878 4.2390 23 1 7.6161 6.2863 3.0731 24 1 9.4904 5.0922 4.0435 25 1 7.2318 4.2703 4.3649 26 6 5.1500 6.0741 4.6756 27 6 1.5716 2.1872 1.2680 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 0.6531 2.2044 -1.2638 34 1 3.9430 0.6797 0.7776 35 1 4.0599 1.4223 -0.8528 36 1 3.7837 3.6523 0.0142 37 1 4.7607 2.8915 1.3072 38 1 2.0379 4.6315 4.8579 39 1 2.3767 6.3298 5.2745 40 1 3.6051 3.8529 6.5707 41 1 2.4504 4.9819 7.3197 42 1 4.7558 5.4919 8.0496 43 1 4.1048 6.8236 7.0646 44 1 9.7498 7.2786 5.6744 45 1 4.9242 7.1403 4.6865 46 1 5.9439 5.8739 3.9560 47 1 1.3148 1.4686 2.0463 48 1 0.7064 2.8086 1.0373 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346951998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:22 Heat of formation + Delta-G solvation = -118.818916 kcal Electronic energy + Delta-G solvation = -29290.600750 eV Core-core repulsion = 25345.335214 eV Total energy + Delta-G solvation = -3945.265536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.28622 -40.79020 -39.43783 -38.75500 -36.73050 -35.25709 -33.86963 -33.64287 -32.30609 -31.75779 -29.50003 -27.72664 -27.02664 -25.86893 -23.72420 -23.62734 -23.21323 -21.32484 -21.13917 -20.31452 -18.99640 -18.52545 -18.36494 -17.99874 -17.38767 -17.12099 -16.44305 -16.16856 -15.89322 -15.78471 -15.34062 -15.18464 -15.04176 -14.92977 -14.67466 -14.42574 -14.33649 -14.23290 -13.75426 -13.71302 -13.35202 -13.30915 -13.06771 -12.98984 -12.65433 -12.49752 -12.47805 -12.33105 -12.15054 -11.90874 -11.69887 -11.63869 -11.46059 -11.28611 -11.10654 -10.99243 -10.83167 -10.11941 -10.03356 -9.73340 -8.40371 -6.43399 0.19113 1.06030 1.22682 1.29136 1.37370 1.96188 2.18802 2.24976 2.90752 2.96191 3.13150 3.35715 3.47538 3.66938 3.93459 4.10576 4.13495 4.15328 4.17600 4.36424 4.40113 4.40785 4.44789 4.49932 4.51174 4.59235 4.70732 4.77332 4.79840 4.85517 4.89498 4.93636 5.00849 5.04172 5.11862 5.14339 5.18251 5.24140 5.30782 5.41071 5.45849 5.56418 5.62089 5.89105 6.17761 6.22640 6.49996 6.65310 6.75749 6.78744 7.22054 8.75638 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019360 B = 0.003606 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.930289 B = 7762.873769 C = 8784.041895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.134 4.134 3 C 0.129 3.871 4 O -0.560 6.560 5 C -0.118 4.118 6 C 0.096 3.904 7 N -0.582 5.582 8 C 0.530 3.470 9 O -0.518 6.518 10 C 0.489 3.511 11 O -0.554 6.554 12 N -0.573 5.573 13 C 0.048 3.952 14 C -0.123 4.123 15 C -0.100 4.100 16 C 0.006 3.994 17 H 0.017 0.983 18 C -0.513 4.513 19 H 0.051 0.949 20 C 0.027 3.973 21 N -0.937 5.937 22 Si 0.936 3.064 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.265 1.265 26 C 0.105 3.895 27 C 0.078 3.922 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.392 0.608 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.160 0.840 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.268 0.732 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.093 0.907 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.644 -16.484 -13.707 29.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.172 4.172 3 C 0.088 3.912 4 O -0.369 6.369 5 C -0.156 4.156 6 C -0.026 4.026 7 N -0.314 5.314 8 C 0.314 3.686 9 O -0.397 6.397 10 C 0.272 3.728 11 O -0.434 6.434 12 N -0.305 5.305 13 C -0.072 4.072 14 C -0.161 4.161 15 C -0.137 4.137 16 C -0.013 4.013 17 H 0.035 0.965 18 C -0.551 4.551 19 H 0.069 0.931 20 C -0.172 4.172 21 N -0.576 5.576 22 Si 0.765 3.235 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.190 1.190 26 C -0.017 4.017 27 C -0.043 4.043 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.243 0.757 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.176 0.824 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.122 0.878 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.111 0.889 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.873 -16.278 -13.803 29.162 hybrid contribution 0.482 0.352 -0.349 0.691 sum -19.391 -15.926 -14.152 28.809 Atomic orbital electron populations 1.21862 0.94323 1.03222 1.02470 1.22039 0.97476 0.93466 1.04195 1.22135 0.94502 0.91731 0.82873 1.86550 1.29322 1.78940 1.42110 1.23007 0.93975 0.95588 1.03010 1.22724 0.89591 0.98700 0.91579 1.48310 1.18061 1.41429 1.23631 1.19548 0.87477 0.80470 0.81134 1.90253 1.35266 1.65906 1.48292 1.20393 0.88088 0.81618 0.82700 1.90695 1.38965 1.64189 1.49527 1.48398 1.17289 1.46234 1.18573 1.23468 0.88463 1.05712 0.89561 1.21906 0.98726 0.99079 0.96410 1.21421 0.94277 0.99717 0.98316 1.19411 0.94609 0.95790 0.91513 0.96456 1.21264 0.97188 1.26499 1.10190 0.93106 1.25674 0.95653 0.95853 0.99999 1.69986 1.05357 1.41148 1.41138 0.86067 0.76230 0.80533 0.80672 1.20256 1.21707 1.19009 1.22367 0.85505 0.95392 0.98392 1.23136 0.88994 0.93981 0.98233 0.92355 0.91531 0.91325 0.89787 0.89972 0.75699 0.87646 0.87589 0.91063 0.90300 0.82398 0.90560 0.92638 0.87833 0.92257 0.92256 0.92247 0.91099 0.92565 0.88896 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.45 71.98 0.68 -0.28 16 2 C -0.13 -1.09 5.11 30.59 0.16 -0.93 16 3 C 0.13 1.68 0.94 -9.60 -0.01 1.67 16 4 O -0.56 -7.73 13.06 -148.98 -1.95 -9.68 16 5 C -0.12 -1.85 6.27 32.06 0.20 -1.65 16 6 C 0.10 2.33 5.97 86.93 0.52 2.84 16 7 N -0.58 -14.69 3.32 -812.94 -2.70 -17.39 16 8 C 0.53 16.56 7.83 87.27 0.68 17.25 16 9 O -0.52 -15.97 13.35 -3.23 -0.04 -16.01 16 10 C 0.49 18.73 7.71 87.27 0.67 19.40 16 11 O -0.55 -23.85 13.31 -3.24 -0.04 -23.89 16 12 N -0.57 -22.35 2.97 -820.48 -2.44 -24.79 16 13 C 0.05 1.49 6.24 86.36 0.54 2.03 16 14 C -0.12 -3.75 6.08 30.67 0.19 -3.56 16 15 C -0.10 -3.81 5.11 30.62 0.16 -3.65 16 16 C 0.01 0.30 1.84 -11.46 -0.02 0.28 16 17 H 0.02 0.87 7.21 -2.39 -0.02 0.85 16 18 C -0.51 -29.27 9.15 25.60 0.23 -29.04 16 19 H 0.05 3.12 7.99 -2.91 -0.02 3.10 16 20 C 0.03 1.61 5.45 84.65 0.46 2.07 16 21 N -0.94 -58.80 13.96 21.45 0.30 -58.50 16 22 Si 0.94 48.80 24.32 68.60 1.67 50.47 16 23 H -0.28 -14.44 6.92 99.48 0.69 -13.75 16 24 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 25 H -0.27 -13.65 6.53 99.48 0.65 -13.00 16 26 C 0.11 4.81 5.10 86.36 0.44 5.25 16 27 C 0.08 1.32 5.24 86.73 0.45 1.77 16 28 H 0.06 0.38 7.15 -2.39 -0.02 0.36 16 29 H 0.07 0.28 6.96 -2.39 -0.02 0.26 16 30 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.63 8.13 -2.38 -0.02 0.61 16 33 H 0.39 2.65 7.62 -74.06 -0.56 2.08 16 34 H 0.11 1.38 8.04 -2.39 -0.02 1.36 16 35 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 2.30 6.34 -2.39 -0.02 2.29 16 38 H 0.16 4.77 3.76 -83.36 -0.31 4.46 16 39 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 45 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 46 H 0.06 2.84 2.33 -2.39 -0.01 2.84 16 47 H 0.09 1.42 7.55 -2.39 -0.02 1.40 16 48 H 0.08 1.33 8.06 -2.39 -0.02 1.31 16 Total: -1.00 -73.07 363.17 0.18 -72.89 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.03 Total: 13.45 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 5.35 Total: 13.45 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -4.84 Total: -100.68 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -2.03 Total: -49.58 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 1.67 Total: 50.47 kcal Total: -73.07 0.18 -72.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346951998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.928 kcal (2) G-P(sol) polarization free energy of solvation -73.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds