Wall clock time and date at job start Tue Mar 31 2020 14:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47595 * 2 1 4 4 O 1.42900 * 110.88668 * 303.88168 * 3 2 1 5 5 C 1.55154 * 111.00661 * 180.02562 * 3 2 1 6 6 C 1.54332 * 102.94158 * 206.42492 * 5 3 2 7 7 N 1.47028 * 107.27085 * 22.19100 * 6 5 3 8 8 C 1.34770 * 125.64839 * 180.79861 * 7 6 5 9 9 O 1.21349 * 120.00128 * 180.02562 * 8 7 6 10 10 C 1.49455 * 119.99713 * 0.02562 * 8 7 6 11 11 O 1.21348 * 120.00376 * 353.05223 * 10 8 7 12 12 N 1.34781 * 119.99735 * 173.05718 * 10 8 7 13 13 C 1.46924 * 120.62948 * 1.65855 * 12 10 8 14 14 C 1.52760 * 109.01131 * 233.58476 * 13 12 10 15 15 C 1.53042 * 109.38413 * 305.59522 * 14 13 12 16 16 C 1.53034 * 109.53888 * 61.23548 * 15 14 13 17 17 H 1.09001 * 109.52474 * 58.60139 * 16 15 14 18 18 C 1.50700 * 109.49733 * 178.68242 * 16 15 14 19 19 H 1.08001 * 120.00072 * 35.04342 * 18 16 15 20 20 C 1.37878 * 120.00088 * 215.03869 * 18 16 15 21 21 N 1.31515 * 119.99902 * 174.95553 * 20 18 16 22 22 Si 1.86796 * 120.00102 * 354.96156 * 20 18 16 23 23 H 1.48497 * 109.47410 * 94.84203 * 22 20 18 24 24 H 1.48501 * 109.47012 * 214.84291 * 22 20 18 25 25 H 1.48503 * 109.47023 * 334.83768 * 22 20 18 26 26 C 1.46924 * 120.63039 * 181.94698 * 12 10 8 27 27 C 1.47425 * 108.70149 * 1.05974 * 7 6 5 28 28 H 1.09007 * 109.47042 * 300.00041 * 1 2 3 29 29 H 1.08996 * 109.47226 * 59.99745 * 1 2 3 30 30 H 1.09001 * 109.47441 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47287 * 239.99505 * 2 1 3 32 32 H 1.09006 * 109.47222 * 120.00251 * 2 1 3 33 33 H 0.96704 * 113.99606 * 56.11569 * 4 3 2 34 34 H 1.08996 * 110.72022 * 88.06005 * 5 3 2 35 35 H 1.08997 * 110.71856 * 324.78128 * 5 3 2 36 36 H 1.08996 * 109.88210 * 262.77569 * 6 5 3 37 37 H 1.08999 * 110.01362 * 141.67854 * 6 5 3 38 38 H 1.08997 * 109.58738 * 353.42712 * 13 12 10 39 39 H 1.09010 * 109.58511 * 113.84966 * 13 12 10 40 40 H 1.08999 * 109.57010 * 185.55088 * 14 13 12 41 41 H 1.09007 * 109.38311 * 65.51545 * 14 13 12 42 42 H 1.08996 * 109.45654 * 301.21228 * 15 14 13 43 43 H 1.08997 * 109.46143 * 181.25592 * 15 14 13 44 44 H 0.96999 * 120.00058 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.58407 * 246.15451 * 26 12 10 46 46 H 1.09003 * 109.58866 * 6.43392 * 26 12 10 47 47 H 1.09004 * 110.36577 * 94.71006 * 27 7 6 48 48 H 1.09002 * 110.36389 * 217.02777 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 1.5082 2.1709 -1.1084 5 6 3.5910 1.4839 -0.0006 6 6 3.9008 2.8395 0.6688 7 7 2.7215 3.2137 1.4631 8 6 2.5890 4.3416 2.1889 9 8 1.5663 4.5475 2.8088 10 6 3.7016 5.3386 2.2302 11 8 4.7694 5.0779 1.7160 12 7 3.5189 6.5273 2.8386 13 6 2.2441 6.8431 3.4971 14 6 1.7149 8.1668 2.9481 15 6 2.7879 9.2468 3.1042 16 6 4.0313 8.8524 2.3039 17 1 3.7645 8.7271 1.2545 18 6 5.0752 9.9317 2.4321 19 1 5.1780 10.4762 3.3591 20 6 5.8992 10.2239 1.3659 21 7 6.7421 11.2305 1.4429 22 14 5.8182 9.1903 -0.1879 23 1 4.9080 9.8378 -1.1663 24 1 7.1765 9.0747 -0.7768 25 1 5.3059 7.8366 0.1443 26 6 4.5887 7.5344 2.8505 27 6 1.7106 2.1479 1.3392 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.5421 2.1732 -1.1503 34 1 3.9770 1.4598 -1.0197 35 1 3.9990 0.6615 0.5870 36 1 4.0891 3.5951 -0.0939 37 1 4.7706 2.7444 1.3188 38 1 1.5228 6.0511 3.2958 39 1 2.4005 6.9331 4.5721 40 1 0.8212 8.4594 3.4992 41 1 1.4690 8.0482 1.8927 42 1 3.0508 9.3479 4.1572 43 1 2.4036 10.1969 2.7333 44 1 7.3215 11.4364 0.6927 45 1 4.9403 7.6818 3.8717 46 1 5.4150 7.1972 2.2247 47 1 1.7958 1.4459 2.1688 48 1 0.7091 2.5770 1.3057 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346952005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:35 Heat of formation + Delta-G solvation = -102.081265 kcal Electronic energy + Delta-G solvation = -29187.357176 eV Core-core repulsion = 25242.817439 eV Total energy + Delta-G solvation = -3944.539737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.98349 -39.66788 -38.12878 -37.13384 -35.76611 -33.35813 -33.16264 -31.85031 -30.96319 -30.47208 -28.69007 -26.34277 -25.20126 -24.70697 -22.76089 -22.03726 -21.77825 -20.65307 -19.67447 -18.76492 -17.49798 -17.23546 -16.93114 -16.42417 -16.24160 -15.73395 -15.58686 -14.85368 -14.42935 -14.19837 -14.08028 -14.03560 -13.75534 -13.62198 -13.26536 -13.15210 -13.04742 -12.79314 -12.50329 -12.46485 -12.21738 -12.16481 -12.14408 -11.74738 -11.64898 -11.46207 -11.13260 -10.94781 -10.66419 -10.56516 -10.40709 -10.37490 -9.98302 -9.70630 -9.50077 -9.19280 -8.92556 -8.65747 -8.57670 -8.08949 -6.12089 -4.12712 1.61679 2.35978 3.30618 3.40773 3.42117 3.50421 3.56066 3.70228 4.00677 4.18557 4.28099 4.42324 4.44319 4.65519 4.81349 4.94073 4.98051 5.18229 5.19607 5.26855 5.33771 5.44898 5.48823 5.51815 5.56631 5.57544 5.69326 5.72685 5.79502 5.86337 5.98475 6.04789 6.22932 6.25089 6.37915 6.51062 6.59299 6.67491 6.81300 6.87620 7.11548 7.24724 7.27594 7.35276 7.64534 7.74813 7.87082 8.30745 8.48524 8.93428 9.51283 11.00307 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018380 B = 0.003526 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.056229 B = 7939.897680 C = 8766.097259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.140 4.140 3 C 0.116 3.884 4 O -0.544 6.544 5 C -0.122 4.122 6 C 0.109 3.891 7 N -0.587 5.587 8 C 0.527 3.473 9 O -0.516 6.516 10 C 0.498 3.502 11 O -0.528 6.528 12 N -0.568 5.568 13 C 0.050 3.950 14 C -0.135 4.135 15 C -0.106 4.106 16 C 0.008 3.992 17 H 0.034 0.966 18 C -0.513 4.513 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.895 5.895 22 Si 0.869 3.131 23 H -0.279 1.279 24 H -0.287 1.287 25 H -0.255 1.255 26 C 0.107 3.893 27 C 0.082 3.918 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.377 0.623 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.147 0.853 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.265 0.735 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.731 -23.697 -1.671 26.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.178 4.178 3 C 0.074 3.926 4 O -0.350 6.350 5 C -0.160 4.160 6 C -0.013 4.013 7 N -0.320 5.320 8 C 0.312 3.688 9 O -0.394 6.394 10 C 0.279 3.721 11 O -0.406 6.406 12 N -0.300 5.300 13 C -0.071 4.071 14 C -0.173 4.173 15 C -0.144 4.144 16 C -0.012 4.012 17 H 0.052 0.948 18 C -0.551 4.551 19 H 0.094 0.906 20 C -0.127 4.127 21 N -0.532 5.532 22 Si 0.696 3.304 23 H -0.205 1.205 24 H -0.213 1.213 25 H -0.179 1.179 26 C -0.013 4.013 27 C -0.041 4.041 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.226 0.774 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.163 0.837 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.900 -23.415 -1.772 26.325 hybrid contribution -0.442 -0.362 -0.696 0.901 sum -12.343 -23.777 -2.468 26.903 Atomic orbital electron populations 1.21847 0.95241 1.02700 1.02159 1.22041 0.96747 0.95349 1.03642 1.22337 0.94572 0.90381 0.85262 1.86594 1.25959 1.75340 1.47144 1.22805 0.92737 0.97567 1.02842 1.22194 0.87771 0.96084 0.95253 1.48180 1.18378 1.18622 1.46831 1.20347 0.87932 0.81563 0.78965 1.90289 1.30971 1.74022 1.44165 1.19726 0.87759 0.83487 0.81116 1.90721 1.26733 1.77212 1.45902 1.48445 1.16871 1.13669 1.51021 1.23098 0.86473 1.01110 0.96417 1.21900 0.98808 0.95682 1.00887 1.21593 0.95292 0.97053 1.00443 1.19466 0.94157 0.92059 0.95506 0.94764 1.20895 1.16148 1.17046 1.00992 0.90607 1.25076 0.94796 0.94450 0.98424 1.69904 1.23530 1.27690 1.32078 0.86960 0.77595 0.82253 0.83599 1.20479 1.21267 1.17936 1.22703 0.89118 0.87555 1.01920 1.23027 0.93465 0.89684 0.97922 0.92160 0.92321 0.91852 0.90392 0.90392 0.77435 0.88741 0.89025 0.90031 0.89761 0.83709 0.92022 0.91686 0.92524 0.92779 0.92231 0.92535 0.91518 0.89769 0.90094 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.71 9.40 37.15 0.35 -0.36 16 2 C -0.14 -0.73 5.25 -26.74 -0.14 -0.87 16 3 C 0.12 0.92 1.00 -88.47 -0.09 0.84 16 4 O -0.54 -5.10 13.16 -35.23 -0.46 -5.57 16 5 C -0.12 -1.03 6.16 -24.89 -0.15 -1.18 16 6 C 0.11 1.35 5.50 -3.06 -0.02 1.33 16 7 N -0.59 -7.88 3.33 -171.01 -0.57 -8.45 16 8 C 0.53 8.66 7.83 -11.59 -0.09 8.57 16 9 O -0.52 -8.64 13.28 5.50 0.07 -8.57 16 10 C 0.50 9.58 7.71 -11.58 -0.09 9.49 16 11 O -0.53 -11.09 13.59 5.50 0.07 -11.02 16 12 N -0.57 -11.18 2.98 -173.54 -0.52 -11.69 16 13 C 0.05 0.85 6.20 -3.93 -0.02 0.83 16 14 C -0.13 -2.28 6.06 -26.83 -0.16 -2.45 16 15 C -0.11 -2.12 5.15 -26.69 -0.14 -2.26 16 16 C 0.01 0.18 1.79 -91.66 -0.16 0.02 16 17 H 0.03 0.85 5.59 -51.93 -0.29 0.56 16 18 C -0.51 -14.19 8.86 -34.44 -0.31 -14.50 16 19 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 20 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 21 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 22 Si 0.87 22.17 26.63 -169.99 -4.53 17.64 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.26 -6.51 5.99 56.52 0.34 -6.17 16 26 C 0.11 2.38 5.51 -3.71 -0.02 2.36 16 27 C 0.08 0.79 5.36 -2.53 -0.01 0.78 16 28 H 0.06 0.27 7.52 -51.92 -0.39 -0.12 16 29 H 0.06 0.23 6.75 -51.93 -0.35 -0.12 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 33 H 0.38 2.32 7.24 45.56 0.33 2.65 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.57 8.04 -51.93 -0.42 0.16 16 36 H 0.08 1.19 7.76 -51.93 -0.40 0.79 16 37 H 0.08 1.07 7.53 -51.93 -0.39 0.68 16 38 H 0.15 2.43 3.79 -56.97 -0.22 2.21 16 39 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 45 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 46 H 0.08 2.04 5.91 -51.93 -0.31 1.74 16 47 H 0.08 0.67 7.98 -51.93 -0.41 0.25 16 48 H 0.08 0.83 7.98 -51.93 -0.41 0.42 16 LS Contribution 368.19 15.07 5.55 5.55 Total: -1.00 -33.29 368.19 -7.87 -41.16 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.11 Total: 2.78 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -1.15 Total: 4.68 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.31 Total: -46.65 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.32 Total: -25.15 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.53 Total: 17.64 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.29 -7.87 -41.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346952005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.920 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds