Wall clock time and date at job start Tue Mar 31 2020 13:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99801 * 2 1 4 4 H 1.48495 * 109.46871 * 180.02562 * 3 2 1 5 5 H 1.48512 * 109.46731 * 300.00005 * 3 2 1 6 6 H 1.48491 * 109.47284 * 59.99797 * 3 2 1 7 7 C 1.37875 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00149 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99729 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.49977 * 59.93882 * 9 7 2 11 11 C 1.53045 * 109.49813 * 179.97438 * 9 7 2 12 12 C 1.53036 * 109.53907 * 181.31880 * 11 9 7 13 13 C 1.53186 * 109.31412 * 298.63521 * 12 11 9 14 14 N 1.46924 * 108.77452 * 54.63315 * 13 12 11 15 15 C 1.34781 * 120.62807 * 126.37259 * 14 13 12 16 16 O 1.21350 * 120.00111 * 188.67202 * 15 14 13 17 17 C 1.49448 * 120.00164 * 8.66786 * 15 14 13 18 18 O 1.21357 * 119.99639 * 6.76558 * 17 15 14 19 19 N 1.34774 * 120.00192 * 186.76786 * 17 15 14 20 20 C 1.46503 * 120.00055 * 179.97438 * 19 17 15 21 21 H 1.09002 * 108.65854 * 36.70868 * 20 19 17 22 22 C 1.50283 * 108.78607 * 154.99982 * 20 19 17 23 23 C 1.54270 * 108.48272 * 212.98525 * 22 20 19 24 24 C 1.45982 * 111.73932 * 281.94598 * 23 22 20 25 25 O 1.44244 * 112.02175 * 60.10948 * 24 23 22 26 26 C 1.40029 * 112.33299 * 277.29930 * 25 24 23 27 27 C 1.54353 * 112.49990 * 97.23006 * 26 25 24 28 28 C 1.46921 * 118.73996 * 306.64333 * 14 13 12 29 29 H 0.97005 * 120.00172 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.45794 * 61.29273 * 11 9 7 31 31 H 1.09006 * 109.45701 * 301.34455 * 11 9 7 32 32 H 1.09011 * 109.49502 * 178.68398 * 12 11 9 33 33 H 1.08996 * 109.49898 * 58.58765 * 12 11 9 34 34 H 1.09004 * 109.58708 * 294.84695 * 13 12 11 35 35 H 1.09000 * 109.70740 * 174.49689 * 13 12 11 36 36 H 0.96995 * 120.00221 * 0.02562 * 19 17 15 37 37 H 1.09001 * 109.63189 * 93.29499 * 22 20 19 38 38 H 1.08994 * 109.63953 * 332.68827 * 22 20 19 39 39 H 1.09004 * 109.02632 * 161.36580 * 23 22 20 40 40 H 1.09004 * 108.96458 * 42.49125 * 23 22 20 41 41 H 1.09004 * 108.95684 * 180.73305 * 24 23 22 42 42 H 1.09000 * 108.96232 * 299.47918 * 24 23 22 43 43 H 1.08999 * 108.90650 * 336.44735 * 26 25 24 44 44 H 1.09002 * 108.81099 * 217.94212 * 26 25 24 45 45 H 1.09000 * 109.08292 * 198.79225 * 27 26 25 46 46 H 1.09009 * 109.08642 * 79.81535 * 27 26 25 47 47 H 1.09009 * 109.58489 * 173.14114 * 28 14 13 48 48 H 1.08998 * 109.59019 * 293.56409 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6231 -2.5574 -0.8873 11 6 2.2451 -3.6628 0.0015 12 6 1.4811 -4.9885 -0.0306 13 6 0.6068 -5.0997 1.2223 14 7 -0.2517 -3.9104 1.3070 15 6 -1.5881 -4.0355 1.4297 16 8 -2.2998 -3.0567 1.3408 17 6 -2.1934 -5.3796 1.6752 18 8 -1.4787 -6.3375 1.8863 19 7 -3.5329 -5.5281 1.6621 20 6 -4.1262 -6.8459 1.9022 21 1 -3.5300 -7.3653 2.6525 22 6 -5.5191 -6.6597 2.4348 23 6 -5.8252 -7.8099 3.4164 24 6 -6.1566 -9.0461 2.7142 25 8 -5.0774 -9.4936 1.8683 26 6 -5.0707 -8.8458 0.6269 27 6 -4.0873 -7.6567 0.5865 28 6 0.3737 -2.5822 1.2494 29 1 -0.4851 0.8401 0.0004 30 1 2.8570 -3.6179 0.9024 31 1 2.8868 -3.5921 -0.8769 32 1 2.1899 -5.8163 -0.0543 33 1 0.8502 -5.0234 -0.9187 34 1 1.2413 -5.1561 2.1069 35 1 -0.0131 -5.9942 1.1598 36 1 -4.1041 -4.7626 1.4930 37 1 -6.2323 -6.6820 1.6108 38 1 -5.5873 -5.7051 2.9565 39 1 -6.6661 -7.5236 4.0481 40 1 -4.9512 -7.9814 4.0447 41 1 -6.3766 -9.8219 3.4477 42 1 -7.0416 -8.8784 2.1003 43 1 -6.0751 -8.4799 0.4140 44 1 -4.7871 -9.5638 -0.1427 45 1 -4.3535 -7.0022 -0.2435 46 1 -3.0769 -8.0349 0.4306 47 1 -0.4000 -1.8158 1.2019 48 1 0.9887 -2.4290 2.1362 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347549729.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:24 Heat of formation + Delta-G solvation = -109.013567 kcal Electronic energy + Delta-G solvation = -28769.766227 eV Core-core repulsion = 24824.925883 eV Total energy + Delta-G solvation = -3944.840344 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72110 -39.74811 -38.23506 -36.83733 -35.91045 -33.62594 -33.21163 -31.87109 -31.61457 -29.76511 -27.51379 -26.12213 -25.10397 -24.83129 -22.67189 -21.94561 -21.74460 -20.46135 -20.02313 -18.78422 -17.23807 -17.03551 -16.86463 -16.45296 -16.18093 -15.61764 -15.38908 -15.15513 -14.59653 -14.46131 -14.33818 -13.83532 -13.69399 -13.43348 -13.29376 -13.19572 -12.89903 -12.74679 -12.57028 -12.15533 -11.94540 -11.78471 -11.57608 -11.42303 -11.28250 -11.01382 -10.98995 -10.71046 -10.66916 -10.43923 -10.30189 -10.12441 -9.99940 -9.86137 -9.19960 -9.16070 -9.10338 -8.56376 -8.44778 -7.81026 -6.01444 -4.09992 1.83147 2.71666 3.29214 3.37528 3.41011 3.53948 3.65647 3.94099 4.29726 4.41716 4.49543 4.58245 4.68668 4.74620 4.81576 5.02551 5.07039 5.19771 5.21925 5.28652 5.39334 5.43531 5.54758 5.62191 5.67464 5.75084 5.78538 5.86690 5.92318 5.99554 6.16881 6.26667 6.38310 6.55946 6.62112 6.72751 6.86059 6.91686 6.99450 7.04411 7.19462 7.28962 7.60373 7.83765 7.95271 8.00488 8.18289 8.36066 8.59848 8.94417 9.55639 11.03803 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.025493 B = 0.002769 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.058871 B =10109.845856 C =10774.676649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.133 4.133 13 C 0.072 3.928 14 N -0.569 5.569 15 C 0.493 3.507 16 O -0.522 6.522 17 C 0.510 3.490 18 O -0.516 6.516 19 N -0.705 5.705 20 C 0.147 3.853 21 H 0.092 0.908 22 C -0.131 4.131 23 C -0.151 4.151 24 C 0.057 3.943 25 O -0.369 6.369 26 C 0.064 3.936 27 C -0.160 4.160 28 C 0.108 3.892 29 H 0.263 0.737 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.126 0.874 36 H 0.411 0.589 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.124 0.876 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.929 -17.289 4.240 22.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.078 0.922 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.150 4.150 12 C -0.171 4.171 13 C -0.051 4.051 14 N -0.301 5.301 15 C 0.274 3.726 16 O -0.399 6.399 17 C 0.292 3.708 18 O -0.393 6.393 19 N -0.358 5.358 20 C 0.043 3.957 21 H 0.110 0.890 22 C -0.169 4.169 23 C -0.189 4.189 24 C -0.020 4.020 25 O -0.288 6.288 26 C -0.014 4.014 27 C -0.199 4.199 28 C -0.012 4.012 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.143 0.857 36 H 0.248 0.752 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.142 0.858 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.790 -17.447 4.414 22.078 hybrid contribution 0.173 1.613 -0.185 1.633 sum -12.617 -15.834 4.229 20.683 Atomic orbital electron populations 1.69896 1.05731 1.26707 1.49562 1.25068 0.94912 0.99306 0.94839 0.86522 0.80083 0.83715 0.77615 1.19769 1.21006 1.20974 1.21127 0.93007 0.90016 1.51538 0.92204 1.18891 0.92680 0.92513 0.93817 0.95245 1.21657 0.98553 0.94260 1.00563 1.21956 0.98628 0.98820 0.97734 1.22685 0.94707 0.89817 0.97855 1.48429 1.04521 1.10110 1.67037 1.19860 0.83968 0.88380 0.80425 1.90768 1.60163 1.39120 1.49894 1.20768 0.83032 0.89935 0.77056 1.90473 1.59250 1.41826 1.47728 1.46135 1.06572 1.11885 1.71250 1.20927 0.94157 0.82935 0.97665 0.88976 1.21663 0.95926 0.99764 0.99543 1.21137 1.03526 0.95215 0.99054 1.21602 0.89131 0.96683 0.94534 1.87846 1.51663 1.62250 1.26993 1.22300 0.98366 0.94287 0.86421 1.23062 1.01944 0.97252 0.97632 1.22387 0.98874 0.80766 0.99162 0.92722 0.93169 0.93054 0.92117 0.92469 0.92214 0.85682 0.75229 0.90873 0.90032 0.90198 0.90523 0.89320 0.92831 0.93051 0.90007 0.90709 0.90415 0.85810 0.93362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.46 11.39 55.43 0.63 -24.82 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.08 8.56 -34.44 -0.29 -14.37 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.04 1.00 2.24 -91.87 -0.21 0.80 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.11 -2.33 5.11 -26.69 -0.14 -2.47 16 12 C -0.13 -2.37 6.08 -26.62 -0.16 -2.53 16 13 C 0.07 1.30 5.99 -3.71 -0.02 1.28 16 14 N -0.57 -12.02 2.98 -173.54 -0.52 -12.54 16 15 C 0.49 10.05 7.73 -11.58 -0.09 9.96 16 16 O -0.52 -12.02 15.93 5.50 0.09 -11.93 16 17 C 0.51 8.49 7.65 -11.59 -0.09 8.40 16 18 O -0.52 -8.98 12.85 5.49 0.07 -8.91 16 19 N -0.71 -9.17 4.94 -54.73 -0.27 -9.44 16 20 C 0.15 1.57 2.10 -68.44 -0.14 1.42 16 21 H 0.09 1.16 6.78 -51.93 -0.35 0.81 16 22 C -0.13 -1.01 5.15 -27.42 -0.14 -1.15 16 23 C -0.15 -1.01 5.52 -29.39 -0.16 -1.17 16 24 C 0.06 0.38 6.12 33.83 0.21 0.58 16 25 O -0.37 -3.52 10.35 -33.00 -0.34 -3.86 16 26 C 0.06 0.53 6.09 37.87 0.23 0.76 16 27 C -0.16 -1.61 5.77 -25.18 -0.15 -1.75 16 28 C 0.11 2.64 5.39 -3.94 -0.02 2.62 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.13 2.21 4.31 -54.80 -0.24 1.97 16 36 H 0.41 5.02 7.99 -40.82 -0.33 4.70 16 37 H 0.07 0.48 7.07 -51.93 -0.37 0.12 16 38 H 0.08 0.63 7.89 -51.93 -0.41 0.22 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.60 7.53 -51.93 -0.39 0.21 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.28 7.34 -51.93 -0.38 -0.10 16 43 H 0.05 0.33 6.53 -51.93 -0.34 -0.01 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 46 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 47 H 0.12 3.46 5.12 -51.92 -0.27 3.20 16 48 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 368.40 15.07 5.55 5.55 Total: -1.00 -31.31 368.40 -8.76 -40.07 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.68 Total: 5.74 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -1.27 Total: 3.96 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.16 Total: -46.80 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.18 Total: -24.70 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.31 -8.76 -40.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347549729.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.940 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds