Wall clock time and date at job start Tue Mar 31 2020 14:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47303 * 2 1 4 4 C 1.53000 * 110.91619 * 303.89967 * 3 2 1 5 5 C 1.55158 * 111.00360 * 179.97438 * 3 2 1 6 6 C 1.54317 * 102.94434 * 206.42409 * 5 3 2 7 7 N 1.47028 * 107.26745 * 22.19639 * 6 5 3 8 8 C 1.34780 * 125.64392 * 181.02338 * 7 6 5 9 9 O 1.21352 * 119.99766 * 180.02562 * 8 7 6 10 10 C 1.49449 * 120.00347 * 0.02562 * 8 7 6 11 11 O 1.21348 * 119.99968 * 0.02562 * 10 8 7 12 12 N 1.34776 * 120.00034 * 179.97438 * 10 8 7 13 13 C 1.47425 * 125.65028 * 359.97438 * 12 10 8 14 14 C 1.54908 * 104.83355 * 155.90734 * 13 12 10 15 15 C 1.55157 * 101.58133 * 37.00878 * 14 13 12 16 16 O 1.42902 * 110.71540 * 83.04294 * 15 14 13 17 17 C 1.50697 * 110.71923 * 206.13218 * 15 14 13 18 18 H 1.08001 * 120.00197 * 352.72821 * 17 15 14 19 19 C 1.37880 * 120.00055 * 172.71868 * 17 15 14 20 20 N 1.31523 * 119.99550 * 6.10093 * 19 17 15 21 21 Si 1.86798 * 120.00345 * 186.09836 * 19 17 15 22 22 H 1.48498 * 109.46738 * 265.23785 * 21 19 17 23 23 H 1.48499 * 109.47101 * 25.23568 * 21 19 17 24 24 H 1.48496 * 109.47035 * 145.24101 * 21 19 17 25 25 C 1.47319 * 125.61697 * 180.20129 * 12 10 8 26 26 C 1.47413 * 108.70454 * 1.28409 * 7 6 5 27 27 H 1.08999 * 109.46830 * 59.99518 * 1 2 3 28 28 H 1.09000 * 109.47294 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46864 * 299.99900 * 1 2 3 30 30 H 1.09005 * 109.46945 * 239.99730 * 2 1 3 31 31 H 1.09005 * 109.47211 * 120.00231 * 2 1 3 32 32 H 1.09000 * 109.47291 * 296.10027 * 4 3 2 33 33 H 1.09002 * 109.46784 * 56.10182 * 4 3 2 34 34 H 1.09000 * 109.46946 * 176.09253 * 4 3 2 35 35 H 1.09008 * 110.72069 * 88.06177 * 5 3 2 36 36 H 1.08997 * 110.72222 * 324.79127 * 5 3 2 37 37 H 1.08999 * 109.88731 * 262.78005 * 6 5 3 38 38 H 1.08997 * 109.88370 * 141.61046 * 6 5 3 39 39 H 1.09003 * 110.36466 * 37.06948 * 13 12 10 40 40 H 1.08995 * 110.37014 * 274.74727 * 13 12 10 41 41 H 1.09003 * 111.00173 * 278.93652 * 14 13 12 42 42 H 1.08998 * 111.00671 * 155.08963 * 14 13 12 43 43 H 0.96699 * 113.99365 * 188.91236 * 16 15 14 44 44 H 0.97004 * 119.99554 * 179.97438 * 20 19 17 45 45 H 1.09007 * 110.06211 * 61.68303 * 25 12 10 46 46 H 1.09000 * 109.84890 * 300.42505 * 25 12 10 47 47 H 1.09003 * 110.36470 * 94.48619 * 26 7 6 48 48 H 1.09004 * 110.36860 * 216.80236 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4706 2.2232 -1.1862 5 6 3.5911 1.4839 0.0006 6 6 3.9004 2.8396 0.6699 7 7 2.7204 3.2140 1.4632 8 6 2.5857 4.3441 2.1851 9 8 1.5627 4.5500 2.8046 10 6 3.6961 5.3437 2.2228 11 8 4.7189 5.1380 1.6029 12 7 3.5611 6.4740 2.9443 13 6 2.3778 6.8497 3.7393 14 6 2.9155 7.8292 4.8122 15 6 3.9874 8.6127 4.0094 16 8 3.3854 9.6716 3.2621 17 6 5.0540 9.1507 4.9282 18 1 4.9369 9.0675 5.9986 19 6 6.1794 9.7489 4.4022 20 7 6.2682 9.9584 3.1068 21 14 7.5778 10.2620 5.5294 22 1 7.4170 11.6913 5.8985 23 1 7.5549 9.4279 6.7578 24 1 8.8732 10.0746 4.8278 25 6 4.5702 7.5405 3.0649 26 6 1.7118 2.1457 1.3432 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8319 1.7851 -2.1166 33 1 0.3818 2.1778 -1.1620 34 1 1.7923 3.2628 -1.1250 35 1 3.9780 1.4596 -1.0182 36 1 3.9986 0.6617 0.5887 37 1 4.0892 3.5951 -0.0928 38 1 4.7690 2.7420 1.3210 39 1 1.9438 5.9691 4.2130 40 1 1.6392 7.3454 3.1093 41 1 3.3679 7.2882 5.6434 42 1 2.1271 8.4945 5.1642 43 1 3.9860 10.1048 2.6403 44 1 7.0598 10.3797 2.7368 45 1 4.7709 7.9777 2.0868 46 1 5.4893 7.1343 3.4874 47 1 1.8013 1.4446 2.1730 48 1 0.7091 2.5723 1.3125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349345219.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:17 Heat of formation + Delta-G solvation = -135.838325 kcal Electronic energy + Delta-G solvation = -28916.718169 eV Core-core repulsion = 24970.714616 eV Total energy + Delta-G solvation = -3946.003553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.04853 -40.65005 -39.26667 -38.90282 -36.27373 -35.36922 -34.27112 -31.90503 -31.74231 -29.94061 -29.70143 -28.55418 -27.44669 -25.99632 -24.62776 -23.25316 -22.86423 -21.49783 -20.36678 -19.82584 -19.10102 -18.29737 -18.11989 -17.59094 -17.19071 -16.74382 -16.52009 -16.20973 -15.80939 -15.46985 -14.97577 -14.82765 -14.78497 -14.66827 -14.47297 -14.23310 -13.99207 -13.81204 -13.57131 -13.49519 -13.40472 -13.00255 -12.88037 -12.80512 -12.67817 -12.61863 -12.45769 -12.39134 -12.26565 -12.07001 -11.97441 -11.43413 -11.40017 -11.34531 -11.21348 -10.76285 -10.50024 -10.30036 -9.99087 -9.69563 -8.28866 -6.43071 0.28255 1.13976 1.41070 1.43418 1.53401 2.04620 2.30522 2.39365 2.97690 3.05735 3.43215 3.54025 3.75987 3.79312 4.00582 4.12228 4.18192 4.20794 4.25689 4.31620 4.46813 4.55270 4.56705 4.62574 4.66958 4.72299 4.79107 4.85713 4.90362 4.92373 5.02956 5.06446 5.08944 5.10121 5.14917 5.16163 5.25252 5.26043 5.28008 5.42364 5.43296 5.58934 5.70642 5.99740 6.04563 6.25973 6.48404 6.64324 6.86510 7.24696 7.35038 8.78125 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.026490 B = 0.002856 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.743194 B = 9799.861473 C =10263.251201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.099 4.099 3 C -0.066 4.066 4 C -0.139 4.139 5 C -0.115 4.115 6 C 0.104 3.896 7 N -0.586 5.586 8 C 0.525 3.475 9 O -0.535 6.535 10 C 0.503 3.497 11 O -0.551 6.551 12 N -0.586 5.586 13 C 0.109 3.891 14 C -0.114 4.114 15 C 0.234 3.766 16 O -0.587 6.587 17 C -0.557 4.557 18 H 0.067 0.933 19 C 0.028 3.972 20 N -0.913 5.913 21 Si 0.963 3.037 22 H -0.274 1.274 23 H -0.267 1.267 24 H -0.283 1.283 25 C 0.120 3.880 26 C 0.109 3.891 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.032 0.968 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.376 0.624 44 H 0.271 0.729 45 H 0.045 0.955 46 H 0.048 0.952 47 H 0.084 0.916 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.551 -20.446 -7.392 23.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.137 4.137 3 C -0.067 4.067 4 C -0.196 4.196 5 C -0.153 4.153 6 C -0.019 4.019 7 N -0.320 5.320 8 C 0.307 3.693 9 O -0.413 6.413 10 C 0.286 3.714 11 O -0.431 6.431 12 N -0.319 5.319 13 C -0.012 4.012 14 C -0.152 4.152 15 C 0.194 3.806 16 O -0.395 6.395 17 C -0.595 4.595 18 H 0.085 0.915 19 C -0.174 4.174 20 N -0.551 5.551 21 Si 0.788 3.212 22 H -0.200 1.200 23 H -0.192 1.192 24 H -0.209 1.209 25 C -0.003 4.003 26 C -0.012 4.012 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.225 0.775 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.102 0.898 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.969 -20.542 -7.175 23.535 hybrid contribution 1.612 1.152 0.094 1.984 sum -7.357 -19.391 -7.080 21.915 Atomic orbital electron populations 1.21889 0.95554 1.02224 1.01955 1.21430 0.96126 0.92555 1.03541 1.21846 0.95115 0.96725 0.93034 1.21823 1.01527 0.98773 0.97445 1.22874 0.95021 0.94789 1.02571 1.22275 0.86977 0.98060 0.94555 1.48320 1.19923 1.17889 1.45826 1.19532 0.86991 0.82221 0.80520 1.90679 1.29908 1.76849 1.43872 1.20117 0.88151 0.82549 0.80561 1.90685 1.30803 1.77045 1.44524 1.48790 1.19578 1.18052 1.45458 1.22616 0.86505 0.99401 0.92702 1.22819 0.98658 0.96786 0.96901 1.19730 0.90117 0.83372 0.87420 1.86135 1.43110 1.51736 1.58535 1.21771 1.04062 1.39838 0.93818 0.91471 1.25802 1.00543 0.94357 0.96649 1.69788 1.30257 1.42716 1.12384 0.85462 0.78167 0.78601 0.78959 1.19987 1.19162 1.20855 1.22791 0.90143 0.87370 0.99953 1.22762 0.91620 0.87864 0.98921 0.92165 0.91752 0.93337 0.89768 0.90878 0.90374 0.91386 0.94830 0.87942 0.88623 0.91937 0.91621 0.88018 0.91476 0.89614 0.89074 0.77497 0.91980 0.93694 0.93385 0.89803 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.35 71.98 0.67 -0.85 16 2 C -0.10 -0.91 5.07 30.59 0.15 -0.75 16 3 C -0.07 -0.92 0.66 -50.71 -0.03 -0.96 16 4 C -0.14 -2.03 8.24 71.98 0.59 -1.43 16 5 C -0.11 -1.64 5.91 31.78 0.19 -1.45 16 6 C 0.10 2.50 5.17 86.73 0.45 2.95 16 7 N -0.59 -16.27 3.31 -812.95 -2.69 -18.96 16 8 C 0.52 18.63 7.88 87.27 0.69 19.32 16 9 O -0.54 -19.97 14.03 -3.25 -0.05 -20.01 16 10 C 0.50 20.97 7.88 87.27 0.69 21.66 16 11 O -0.55 -24.57 14.45 -3.24 -0.05 -24.62 16 12 N -0.59 -25.78 3.33 -812.62 -2.71 -28.49 16 13 C 0.11 4.31 6.06 86.85 0.53 4.84 16 14 C -0.11 -4.71 6.23 31.99 0.20 -4.51 16 15 C 0.23 11.59 0.84 -10.35 -0.01 11.59 16 16 O -0.59 -30.31 13.09 -148.98 -1.95 -32.26 16 17 C -0.56 -29.45 8.13 25.60 0.21 -29.24 16 18 H 0.07 3.47 7.79 -2.91 -0.02 3.45 16 19 C 0.03 1.46 5.24 84.65 0.44 1.90 16 20 N -0.91 -49.22 11.07 21.45 0.24 -48.99 16 21 Si 0.96 41.99 29.54 68.60 2.03 44.02 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 25 C 0.12 5.97 5.26 86.67 0.46 6.43 16 26 C 0.11 2.20 5.10 86.93 0.44 2.64 16 27 H 0.06 0.57 6.39 -2.39 -0.02 0.56 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.55 7.51 -2.39 -0.02 0.53 16 30 H 0.08 0.57 8.14 -2.38 -0.02 0.56 16 31 H 0.07 0.61 8.07 -2.38 -0.02 0.60 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.92 6.30 -2.39 -0.02 0.91 16 34 H 0.03 0.66 7.91 -2.39 -0.02 0.64 16 35 H 0.10 1.15 8.05 -2.38 -0.02 1.13 16 36 H 0.10 1.08 8.04 -2.39 -0.02 1.06 16 37 H 0.06 1.72 7.58 -2.39 -0.02 1.70 16 38 H 0.07 1.75 7.69 -2.39 -0.02 1.73 16 39 H 0.10 3.73 6.16 -2.39 -0.01 3.72 16 40 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.09 3.37 8.04 -2.39 -0.02 3.36 16 42 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 43 H 0.38 19.89 7.43 -74.06 -0.55 19.34 16 44 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 45 H 0.04 2.43 7.88 -2.38 -0.02 2.41 16 46 H 0.05 2.59 7.80 -2.39 -0.02 2.57 16 47 H 0.08 1.52 7.99 -2.39 -0.02 1.50 16 48 H 0.07 1.63 7.89 -2.39 -0.02 1.62 16 Total: -1.00 -63.21 374.70 0.90 -62.31 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 0.41 Total: 34.86 kcal Atomic # 6 Polarization: 26.47 SS G_CDS: 5.67 Total: 32.14 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -5.16 Total: -96.43 kcal Atomic # 8 Polarization: -74.85 SS G_CDS: -2.04 Total: -76.89 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -63.21 0.90 -62.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349345219.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.528 kcal (2) G-P(sol) polarization free energy of solvation -63.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds