Wall clock time and date at job start Tue Mar 31 2020 14:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81411 * 102.99753 * 2 1 4 4 C 1.53000 * 112.84816 * 47.04050 * 3 2 1 5 5 N 1.46493 * 109.46878 * 189.34336 * 4 3 2 6 6 C 1.36739 * 127.14253 * 91.84762 * 5 4 3 7 7 C 1.50708 * 126.34199 * 359.96354 * 6 5 4 8 8 N 1.30292 * 107.30947 * 179.83057 * 6 5 4 9 9 N 1.28529 * 110.05179 * 0.44312 * 8 6 5 10 10 C 1.31223 * 109.86006 * 359.71724 * 9 8 6 11 11 N 1.38584 * 126.47251 * 180.02562 * 10 9 8 12 12 C 1.46897 * 110.99514 * 105.48086 * 11 10 9 13 13 C 1.46902 * 110.99970 * 341.53129 * 11 10 9 14 14 H 1.08998 * 109.47244 * 59.99553 * 13 11 10 15 15 C 1.53000 * 109.47059 * 299.99929 * 13 11 10 16 16 C 1.50697 * 109.47223 * 179.97438 * 13 11 10 17 17 H 1.08000 * 119.99985 * 0.02562 * 16 13 11 18 18 C 1.37871 * 120.00497 * 179.97438 * 16 13 11 19 19 N 1.31518 * 119.99616 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 120.00396 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.46954 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47279 * 120.00312 * 20 18 16 23 23 H 1.48501 * 109.47176 * 240.00208 * 20 18 16 24 24 C 1.53773 * 113.61366 * 178.23607 * 3 2 1 25 25 C 1.53777 * 87.08121 * 139.97896 * 24 3 2 26 26 C 1.53776 * 87.17234 * 334.52637 * 25 24 3 27 27 H 1.08999 * 109.47198 * 302.46819 * 1 2 3 28 28 H 1.09000 * 109.47251 * 62.47060 * 1 2 3 29 29 H 1.09003 * 109.46598 * 182.46600 * 1 2 3 30 30 H 1.09000 * 109.46900 * 309.34403 * 4 3 2 31 31 H 1.08997 * 109.47313 * 69.33921 * 4 3 2 32 32 H 1.09001 * 109.47017 * 95.62234 * 7 6 5 33 33 H 1.08998 * 109.46459 * 215.62103 * 7 6 5 34 34 H 1.08996 * 109.46824 * 335.62277 * 7 6 5 35 35 H 1.08998 * 109.46974 * 58.45506 * 12 11 10 36 36 H 1.09007 * 109.46708 * 178.44821 * 12 11 10 37 37 H 1.09000 * 109.47471 * 298.44994 * 12 11 10 38 38 H 1.09005 * 109.47100 * 300.00152 * 15 13 11 39 39 H 1.08999 * 109.47587 * 60.00133 * 15 13 11 40 40 H 1.09001 * 109.46984 * 180.02562 * 15 13 11 41 41 H 0.97003 * 120.00014 * 179.97438 * 19 18 16 42 42 H 1.09006 * 113.61428 * 25.43458 * 24 3 2 43 43 H 1.08994 * 113.69255 * 254.53934 * 24 3 2 44 44 H 1.08999 * 113.61275 * 89.11280 * 25 24 3 45 45 H 1.08997 * 113.61928 * 219.93056 * 25 24 3 46 46 H 1.09008 * 113.61428 * 140.02438 * 26 25 24 47 47 H 1.09002 * 113.61790 * 270.92111 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 1.4194 2.5626 1.0319 5 7 1.6372 3.9958 0.8211 6 6 0.8898 4.8394 0.0469 7 6 -0.3270 4.4677 -0.7609 8 7 1.4228 6.0248 0.1392 9 7 2.4537 5.9859 0.9057 10 6 2.6316 4.7647 1.3520 11 7 3.6389 4.3370 2.2023 12 6 3.1205 4.1040 3.5569 13 6 4.7528 5.2944 2.2224 14 1 4.3926 6.2637 2.5670 15 6 5.3288 5.4364 0.8121 16 6 5.8260 4.7969 3.1561 17 1 5.6940 3.8627 3.6817 18 6 6.9769 5.5338 3.3387 19 7 7.1379 6.6712 2.6983 20 14 8.3075 4.9167 4.4955 21 1 7.8866 3.6219 5.0881 22 1 9.5716 4.7271 3.7397 23 1 8.5222 5.9105 5.5779 24 6 3.7328 2.0511 0.0434 25 6 3.4690 3.1857 -0.9605 26 6 2.2235 2.4007 -1.4044 27 1 -0.3633 0.5517 0.8670 28 1 -0.3634 0.4750 -0.9113 29 1 -0.3632 -1.0268 0.0442 30 1 0.3591 2.3359 0.9204 31 1 1.7458 2.2891 2.0352 32 1 -1.2261 4.6819 -0.1830 33 1 -0.3415 5.0476 -1.6837 34 1 -0.2935 3.4048 -1.0000 35 1 2.3252 3.3595 3.5185 36 1 3.9256 3.7428 4.1968 37 1 2.7261 5.0365 3.9605 38 1 5.6890 4.4670 0.4674 39 1 4.5524 5.7965 0.1371 40 1 6.1556 6.1465 0.8271 41 1 7.9475 7.1898 2.8270 42 1 4.3406 1.2421 -0.3619 43 1 4.0852 2.4000 1.0139 44 1 3.2379 4.1409 -0.4890 45 1 4.2313 3.2696 -1.7350 46 1 1.3568 3.0318 -1.6014 47 1 2.4193 1.6871 -2.2048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001391041981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:55 Heat of formation + Delta-G solvation = 140.578683 kcal Electronic energy + Delta-G solvation = -28003.839909 eV Core-core repulsion = 24544.868319 eV Total energy + Delta-G solvation = -3458.971590 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.96682 -38.95334 -37.16723 -34.12490 -32.98452 -31.50675 -29.80577 -29.27924 -28.41477 -27.34751 -25.72526 -25.16792 -24.50395 -23.69298 -21.89496 -20.73259 -19.57862 -18.91729 -17.46960 -16.81276 -16.13935 -16.01119 -15.42266 -14.92785 -14.60680 -14.50482 -14.14921 -13.91719 -13.78705 -13.72123 -13.29925 -13.12557 -13.02799 -12.87162 -12.61671 -12.39769 -12.19584 -11.98148 -11.64510 -11.14349 -11.05327 -10.91865 -10.81572 -10.77674 -10.66854 -10.36408 -10.24852 -10.20172 -10.07360 -10.02839 -9.89116 -9.47749 -9.22553 -8.63562 -8.45265 -7.85332 -7.46768 -6.05776 -4.13318 1.44837 2.05512 2.29537 2.75037 3.27016 3.32824 3.35371 3.37795 4.10585 4.30105 4.37376 4.47336 4.54467 4.60305 4.77031 4.83636 4.87134 4.95435 5.04900 5.14675 5.27058 5.36365 5.41446 5.44931 5.54874 5.62061 5.76738 5.79792 5.87314 6.04378 6.10188 6.15960 6.22553 6.30517 6.45675 6.47864 6.59315 6.85348 6.96824 7.11452 7.20223 7.41902 7.65873 7.72469 7.94812 8.23944 8.42172 8.88866 9.28725 9.51691 11.00461 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.004780 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.387319 B = 5856.038641 C = 6739.772804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.231 6.231 3 C -0.070 4.070 4 C 0.139 3.861 5 N -0.480 5.480 6 C 0.150 3.850 7 C -0.061 4.061 8 N -0.285 5.285 9 N -0.314 5.314 10 C 0.391 3.609 11 N -0.458 5.458 12 C 0.039 3.961 13 C 0.230 3.770 14 H 0.024 0.976 15 C -0.133 4.133 16 C -0.515 4.515 17 H 0.065 0.935 18 C 0.065 3.935 19 N -0.883 5.883 20 Si 0.898 3.102 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.106 4.106 25 C -0.142 4.142 26 C -0.128 4.128 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.098 0.902 37 H 0.031 0.969 38 H 0.028 0.972 39 H 0.023 0.977 40 H 0.087 0.913 41 H 0.262 0.738 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.917 -12.026 -5.880 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S -0.001 6.001 3 C -0.181 4.181 4 C 0.013 3.987 5 N -0.178 5.178 6 C -0.118 4.118 7 C -0.120 4.120 8 N -0.125 5.125 9 N -0.158 5.158 10 C 0.036 3.964 11 N -0.184 5.184 12 C -0.108 4.108 13 C 0.126 3.874 14 H 0.041 0.959 15 C -0.191 4.191 16 C -0.554 4.554 17 H 0.083 0.917 18 C -0.138 4.138 19 N -0.521 5.521 20 Si 0.726 3.274 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.145 4.145 25 C -0.181 4.181 26 C -0.167 4.167 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.116 0.884 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.130 0.870 44 H 0.116 0.884 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.703 -11.768 -6.241 19.110 hybrid contribution -0.504 -0.180 1.051 1.180 sum -14.207 -11.948 -5.190 19.275 Atomic orbital electron populations 1.23438 0.95399 1.06412 1.04770 1.86969 1.06133 1.09418 1.97555 1.24679 1.02025 0.92165 0.99222 1.21764 0.99871 0.76837 1.00268 1.46283 1.24575 1.09069 1.37852 1.24468 0.99214 0.87909 1.00168 1.20175 0.91280 1.01719 0.98853 1.73990 1.05004 1.18020 1.15522 1.74877 1.12014 1.14862 1.14044 1.22972 0.88887 0.85894 0.98628 1.59234 1.04093 1.47792 1.07271 1.22339 1.00089 0.99512 0.88886 1.19347 0.84349 0.88346 0.95391 0.95854 1.21853 1.01001 1.00532 0.95730 1.21078 1.01748 1.07199 1.25381 0.91670 1.24884 0.98078 0.94817 0.96004 1.69932 1.27260 1.13359 1.41507 0.86449 0.81697 0.78746 0.80547 1.19731 1.20981 1.21065 1.22923 0.90121 0.97868 1.03578 1.23158 0.96937 0.99017 0.99012 1.23445 1.00041 0.99225 0.94020 0.90576 0.90485 0.88140 0.89342 0.87438 0.90235 0.89012 0.91110 0.93813 0.88350 0.95077 0.95292 0.95858 0.89424 0.92809 0.89849 0.87032 0.88354 0.91492 0.90954 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 10.06 101.05 1.02 0.07 16 2 S -0.23 -2.51 21.88 -107.50 -2.35 -4.86 16 3 C -0.07 -0.85 1.36 -89.67 -0.12 -0.97 16 4 C 0.14 1.67 5.27 -4.05 -0.02 1.65 16 5 N -0.48 -7.33 1.62 -114.09 -0.18 -7.51 16 6 C 0.15 2.27 6.35 -154.01 -0.98 1.30 16 7 C -0.06 -0.60 9.31 36.01 0.34 -0.26 16 8 N -0.29 -5.59 12.17 32.99 0.40 -5.19 16 9 N -0.31 -6.93 9.74 30.32 0.30 -6.63 16 10 C 0.39 7.56 3.27 -318.86 -1.04 6.52 16 11 N -0.46 -9.30 2.92 -176.08 -0.51 -9.81 16 12 C 0.04 0.71 9.14 60.06 0.55 1.25 16 13 C 0.23 5.66 1.72 -68.86 -0.12 5.54 16 14 H 0.02 0.67 7.93 -51.93 -0.41 0.26 16 15 C -0.13 -3.31 8.49 37.16 0.32 -2.99 16 16 C -0.52 -13.32 7.90 -34.44 -0.27 -13.59 16 17 H 0.07 1.63 6.40 -52.49 -0.34 1.30 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.88 -24.80 11.32 55.43 0.63 -24.17 16 20 Si 0.90 20.63 29.54 -169.99 -5.02 15.60 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.11 -1.59 6.88 -25.92 -0.18 -1.77 16 25 C -0.14 -2.23 7.32 -25.92 -0.19 -2.42 16 26 C -0.13 -1.56 6.87 -25.78 -0.18 -1.74 16 27 H 0.08 0.49 6.75 -51.92 -0.35 0.14 16 28 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.09 0.82 5.66 -51.93 -0.29 0.53 16 31 H 0.11 1.34 6.29 -51.93 -0.33 1.01 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.55 6.08 -51.93 -0.32 0.24 16 35 H 0.04 0.65 6.36 -51.93 -0.33 0.32 16 36 H 0.10 1.81 6.15 -51.93 -0.32 1.49 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.02 0.56 5.59 -51.93 -0.29 0.27 16 40 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 43 H 0.11 1.97 6.23 -51.93 -0.32 1.65 16 44 H 0.10 1.81 2.70 -51.93 -0.14 1.67 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.07 0.83 4.34 -51.92 -0.23 0.61 16 47 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 357.79 15.07 5.39 5.39 Total: -1.00 -30.13 357.79 -9.25 -39.37 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.91 Total: 3.59 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -0.98 Total: -5.78 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.63 Total: -53.31 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.35 Total: -4.86 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.13 -9.25 -39.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001391041981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.950 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds