Wall clock time and date at job start Tue Mar 31 2020 14:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81411 * 102.99753 * 2 1 4 4 C 1.53000 * 112.84816 * 47.04050 * 3 2 1 5 5 N 1.46493 * 109.46878 * 189.34336 * 4 3 2 6 6 C 1.36739 * 127.14253 * 91.84762 * 5 4 3 7 7 C 1.50708 * 126.34199 * 359.96354 * 6 5 4 8 8 N 1.30292 * 107.30947 * 179.83057 * 6 5 4 9 9 N 1.28529 * 110.05179 * 0.44312 * 8 6 5 10 10 C 1.31223 * 109.86006 * 359.71724 * 9 8 6 11 11 N 1.38584 * 126.47251 * 180.02562 * 10 9 8 12 12 C 1.46897 * 110.99514 * 105.48086 * 11 10 9 13 13 C 1.46902 * 110.99970 * 341.53129 * 11 10 9 14 14 H 1.08998 * 109.47244 * 59.99553 * 13 11 10 15 15 C 1.53000 * 109.47059 * 299.99929 * 13 11 10 16 16 C 1.50697 * 109.47223 * 179.97438 * 13 11 10 17 17 H 1.08000 * 119.99985 * 0.02562 * 16 13 11 18 18 C 1.37871 * 120.00497 * 179.97438 * 16 13 11 19 19 N 1.31518 * 119.99616 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 120.00396 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.46954 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47279 * 120.00312 * 20 18 16 23 23 H 1.48501 * 109.47176 * 240.00208 * 20 18 16 24 24 C 1.53773 * 113.61366 * 178.23607 * 3 2 1 25 25 C 1.53777 * 87.08121 * 139.97896 * 24 3 2 26 26 C 1.53776 * 87.17234 * 334.52637 * 25 24 3 27 27 H 1.08999 * 109.47198 * 302.46819 * 1 2 3 28 28 H 1.09000 * 109.47251 * 62.47060 * 1 2 3 29 29 H 1.09003 * 109.46598 * 182.46600 * 1 2 3 30 30 H 1.09000 * 109.46900 * 309.34403 * 4 3 2 31 31 H 1.08997 * 109.47313 * 69.33921 * 4 3 2 32 32 H 1.09001 * 109.47017 * 95.62234 * 7 6 5 33 33 H 1.08998 * 109.46459 * 215.62103 * 7 6 5 34 34 H 1.08996 * 109.46824 * 335.62277 * 7 6 5 35 35 H 1.08998 * 109.46974 * 58.45506 * 12 11 10 36 36 H 1.09007 * 109.46708 * 178.44821 * 12 11 10 37 37 H 1.09000 * 109.47471 * 298.44994 * 12 11 10 38 38 H 1.09005 * 109.47100 * 300.00152 * 15 13 11 39 39 H 1.08999 * 109.47587 * 60.00133 * 15 13 11 40 40 H 1.09001 * 109.46984 * 180.02562 * 15 13 11 41 41 H 0.97003 * 120.00014 * 179.97438 * 19 18 16 42 42 H 1.09006 * 113.61428 * 25.43458 * 24 3 2 43 43 H 1.08994 * 113.69255 * 254.53934 * 24 3 2 44 44 H 1.08999 * 113.61275 * 89.11280 * 25 24 3 45 45 H 1.08997 * 113.61928 * 219.93056 * 25 24 3 46 46 H 1.09008 * 113.61428 * 140.02438 * 26 25 24 47 47 H 1.09002 * 113.61790 * 270.92111 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 1.4194 2.5626 1.0319 5 7 1.6372 3.9958 0.8211 6 6 0.8898 4.8394 0.0469 7 6 -0.3270 4.4677 -0.7609 8 7 1.4228 6.0248 0.1392 9 7 2.4537 5.9859 0.9057 10 6 2.6316 4.7647 1.3520 11 7 3.6389 4.3370 2.2023 12 6 3.1205 4.1040 3.5569 13 6 4.7528 5.2944 2.2224 14 1 4.3926 6.2637 2.5670 15 6 5.3288 5.4364 0.8121 16 6 5.8260 4.7969 3.1561 17 1 5.6940 3.8627 3.6817 18 6 6.9769 5.5338 3.3387 19 7 7.1379 6.6712 2.6983 20 14 8.3075 4.9167 4.4955 21 1 7.8866 3.6219 5.0881 22 1 9.5716 4.7271 3.7397 23 1 8.5222 5.9105 5.5779 24 6 3.7328 2.0511 0.0434 25 6 3.4690 3.1857 -0.9605 26 6 2.2235 2.4007 -1.4044 27 1 -0.3633 0.5517 0.8670 28 1 -0.3634 0.4750 -0.9113 29 1 -0.3632 -1.0268 0.0442 30 1 0.3591 2.3359 0.9204 31 1 1.7458 2.2891 2.0352 32 1 -1.2261 4.6819 -0.1830 33 1 -0.3415 5.0476 -1.6837 34 1 -0.2935 3.4048 -1.0000 35 1 2.3252 3.3595 3.5185 36 1 3.9256 3.7428 4.1968 37 1 2.7261 5.0365 3.9605 38 1 5.6890 4.4670 0.4674 39 1 4.5524 5.7965 0.1371 40 1 6.1556 6.1465 0.8271 41 1 7.9475 7.1898 2.8270 42 1 4.3406 1.2421 -0.3619 43 1 4.0852 2.4000 1.0139 44 1 3.2379 4.1409 -0.4890 45 1 4.2313 3.2696 -1.7350 46 1 1.3568 3.0318 -1.6014 47 1 2.4193 1.6871 -2.2048 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001391041981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:54 Heat of formation + Delta-G solvation = 124.295146 kcal Electronic energy + Delta-G solvation = -28004.546016 eV Core-core repulsion = 24544.868319 eV Total energy + Delta-G solvation = -3459.677697 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.29483 -40.08060 -38.84982 -35.41394 -34.86055 -32.71216 -31.18433 -30.65352 -29.32672 -28.55981 -27.23090 -26.61831 -26.07094 -24.88769 -23.58861 -21.95653 -21.18336 -20.10012 -18.58760 -18.43987 -17.68598 -17.18481 -17.07228 -16.36692 -15.85605 -15.70884 -15.51870 -15.12621 -14.98273 -14.54034 -14.38645 -14.27428 -14.16153 -13.97420 -13.77853 -13.54922 -13.41216 -13.20993 -13.02700 -12.85028 -12.71091 -12.56605 -12.35753 -12.19582 -12.10228 -12.04690 -11.98298 -11.72981 -11.45398 -11.25803 -11.06164 -11.01263 -10.62590 -10.50766 -10.24714 -9.06407 -8.65705 -8.11731 -6.26201 0.56386 0.88048 1.31997 1.43878 1.45738 1.56970 1.71630 1.93260 2.42081 3.00861 3.12200 3.20095 3.37039 3.45418 3.56080 3.75451 3.91536 4.02956 4.09570 4.17157 4.31918 4.39191 4.43785 4.51177 4.56640 4.65403 4.72083 4.72316 4.77963 4.86153 4.89528 4.96481 4.97507 5.01605 5.05962 5.09126 5.11384 5.17637 5.26889 5.37841 5.46730 5.61507 5.67470 5.95739 6.01955 6.18806 6.62732 6.84552 7.42710 7.90278 8.95093 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.004780 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.387319 B = 5856.038641 C = 6739.772804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.255 6.255 3 C -0.054 4.054 4 C 0.132 3.868 5 N -0.470 5.470 6 C 0.178 3.822 7 C -0.063 4.063 8 N -0.334 5.334 9 N -0.368 5.368 10 C 0.381 3.619 11 N -0.452 5.452 12 C 0.040 3.960 13 C 0.245 3.755 14 H -0.026 1.026 15 C -0.109 4.109 16 C -0.522 4.522 17 H 0.074 0.926 18 C 0.014 3.986 19 N -0.919 5.919 20 Si 0.965 3.035 21 H -0.259 1.259 22 H -0.284 1.284 23 H -0.283 1.283 24 C -0.111 4.111 25 C -0.158 4.158 26 C -0.109 4.109 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.131 0.869 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.014 0.986 38 H 0.028 0.972 39 H 0.019 0.981 40 H 0.057 0.943 41 H 0.261 0.739 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.820 -15.285 -6.125 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.025 6.025 3 C -0.165 4.165 4 C 0.007 3.993 5 N -0.166 5.166 6 C -0.090 4.090 7 C -0.122 4.122 8 N -0.173 5.173 9 N -0.211 5.211 10 C 0.024 3.976 11 N -0.176 5.176 12 C -0.107 4.107 13 C 0.139 3.861 14 H -0.008 1.008 15 C -0.168 4.168 16 C -0.560 4.560 17 H 0.092 0.908 18 C -0.186 4.186 19 N -0.558 5.558 20 Si 0.790 3.210 21 H -0.183 1.183 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.150 4.150 25 C -0.198 4.198 26 C -0.149 4.149 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.133 0.867 30 H 0.148 0.852 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.033 0.967 38 H 0.047 0.953 39 H 0.038 0.962 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.103 0.897 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -16.635 -15.053 -6.490 23.355 hybrid contribution 0.267 0.772 1.056 1.336 sum -16.369 -14.281 -5.433 22.392 Atomic orbital electron populations 1.23589 0.91414 1.07929 1.06301 1.87157 1.10440 1.07255 1.97615 1.24338 0.99624 0.93601 0.98910 1.22137 1.02307 0.74581 1.00236 1.46351 1.23083 1.10171 1.37029 1.25541 0.99039 0.86521 0.97945 1.20532 0.89287 1.03743 0.98637 1.73888 1.05617 1.20697 1.17099 1.74732 1.13739 1.17050 1.15543 1.22688 0.89819 0.86215 0.98884 1.59109 1.04003 1.45977 1.08536 1.22393 1.00900 0.99698 0.87702 1.18884 0.85655 0.87105 0.94471 1.00808 1.21556 0.99645 0.99330 0.96244 1.21380 1.01989 1.07282 1.25337 0.90835 1.25743 1.00412 0.94886 0.97532 1.70093 1.27876 1.14717 1.43109 0.85396 0.78594 0.78614 0.78357 1.18279 1.20992 1.20950 1.22814 0.92834 0.97633 1.01696 1.23147 0.98923 0.98553 0.99140 1.23370 0.98386 0.98678 0.94453 0.89123 0.88815 0.86690 0.85151 0.87643 0.87584 0.88097 0.88070 0.89973 0.88904 0.96725 0.95323 0.96174 0.92467 0.92933 0.89812 0.89956 0.90915 0.92850 0.89651 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 10.06 113.37 1.14 0.06 16 2 S -0.25 -4.61 21.88 -56.49 -1.24 -5.85 16 3 C -0.05 -1.16 1.36 -10.18 -0.01 -1.18 16 4 C 0.13 2.72 5.27 86.38 0.45 3.17 16 5 N -0.47 -13.59 1.62 -514.86 -0.83 -14.42 16 6 C 0.18 5.06 6.35 137.64 0.87 5.94 16 7 C -0.06 -0.95 9.31 71.24 0.66 -0.28 16 8 N -0.33 -13.24 12.17 -49.53 -0.60 -13.84 16 9 N -0.37 -16.94 9.74 -58.00 -0.56 -17.50 16 10 C 0.38 15.04 3.27 260.11 0.85 15.89 16 11 N -0.45 -18.91 2.92 -711.00 -2.07 -20.99 16 12 C 0.04 1.46 9.14 127.69 1.17 2.63 16 13 C 0.24 12.75 1.72 44.17 0.08 12.83 16 14 H -0.03 -1.58 7.93 -2.39 -0.02 -1.60 16 15 C -0.11 -5.81 8.49 71.98 0.61 -5.20 16 16 C -0.52 -27.86 7.90 25.60 0.20 -27.66 16 17 H 0.07 3.73 6.40 -2.91 -0.02 3.71 16 18 C 0.01 0.75 5.30 84.65 0.45 1.19 16 19 N -0.92 -54.06 11.32 21.45 0.24 -53.82 16 20 Si 0.97 43.07 29.54 68.60 2.03 45.09 16 21 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 C -0.11 -3.29 6.88 31.12 0.21 -3.08 16 25 C -0.16 -4.97 7.32 31.12 0.23 -4.74 16 26 C -0.11 -2.38 6.87 31.21 0.21 -2.16 16 27 H 0.09 0.58 6.75 -2.39 -0.02 0.56 16 28 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.13 1.64 5.66 -2.39 -0.01 1.62 16 31 H 0.11 2.29 6.29 -2.39 -0.02 2.28 16 32 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.10 0.93 6.08 -2.39 -0.01 0.91 16 35 H 0.08 2.31 6.36 -2.39 -0.02 2.30 16 36 H 0.09 3.45 6.15 -2.38 -0.01 3.43 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.02 1.04 5.59 -2.39 -0.01 1.02 16 40 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 41 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.08 2.42 8.10 -2.38 -0.02 2.40 16 43 H 0.08 2.95 6.23 -2.39 -0.01 2.94 16 44 H 0.07 2.73 2.70 -2.39 -0.01 2.73 16 45 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.09 1.62 4.34 -2.38 -0.01 1.61 16 47 H 0.10 2.04 8.10 -2.39 -0.02 2.02 16 Total: -1.00 -72.24 357.79 5.08 -67.16 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.99 Total: 16.77 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 7.13 Total: -2.60 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -3.83 Total: -120.57 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: -4.61 SS G_CDS: -1.24 Total: -5.85 kcal Total: -72.24 5.08 -67.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001391041981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.455 kcal (2) G-P(sol) polarization free energy of solvation -72.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds