Wall clock time and date at job start Tue Mar 31 2020 15:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47456 * 2 1 4 4 N 1.30296 * 126.34582 * 271.86434 * 3 2 1 5 5 N 1.28525 * 110.05229 * 179.97438 * 4 3 2 6 6 C 1.31218 * 109.86076 * 359.73899 * 5 4 3 7 7 N 1.38583 * 126.47066 * 180.25565 * 6 5 4 8 8 C 1.46905 * 110.99601 * 106.58632 * 7 6 5 9 9 C 1.46890 * 111.00459 * 342.62937 * 7 6 5 10 10 H 1.09004 * 109.47287 * 59.99564 * 9 7 6 11 11 C 1.53000 * 109.47384 * 299.99980 * 9 7 6 12 12 C 1.50700 * 109.47310 * 180.02562 * 9 7 6 13 13 H 1.07997 * 120.00185 * 359.97438 * 12 9 7 14 14 C 1.37879 * 120.00175 * 180.02562 * 12 9 7 15 15 N 1.31516 * 119.99824 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 120.00004 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.46709 * 90.00357 * 16 14 12 18 18 H 1.48507 * 109.47068 * 209.99901 * 16 14 12 19 19 H 1.48491 * 109.47160 * 330.00037 * 16 14 12 20 20 N 1.36446 * 107.05425 * 0.40750 * 6 5 4 21 21 C 1.46497 * 127.13786 * 179.86918 * 20 6 5 22 22 C 1.52998 * 109.47532 * 269.13706 * 21 20 6 23 23 S 1.81398 * 115.55278 * 268.86678 * 22 21 20 24 24 C 1.81400 * 102.99753 * 319.69442 * 23 22 21 25 25 C 1.53006 * 117.49595 * 54.53447 * 22 21 20 26 26 C 1.53004 * 60.03359 * 107.50164 * 25 22 21 27 27 H 1.09005 * 109.46655 * 300.00196 * 1 2 3 28 28 H 1.09002 * 109.46812 * 59.99800 * 1 2 3 29 29 H 1.08997 * 109.46907 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47056 * 239.99482 * 2 1 3 31 31 H 1.09002 * 109.46812 * 120.00200 * 2 1 3 32 32 H 1.09000 * 109.47239 * 51.95277 * 8 7 6 33 33 H 1.09004 * 109.47115 * 171.95292 * 8 7 6 34 34 H 1.08996 * 109.46740 * 291.94820 * 8 7 6 35 35 H 1.08994 * 109.47050 * 59.99483 * 11 9 7 36 36 H 1.08994 * 109.47489 * 179.97438 * 11 9 7 37 37 H 1.09004 * 109.47085 * 299.99920 * 11 9 7 38 38 H 0.97000 * 119.99749 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.47177 * 149.13764 * 21 20 6 40 40 H 1.09000 * 109.46996 * 29.13942 * 21 20 6 41 41 H 1.09007 * 109.47012 * 186.64846 * 24 23 22 42 42 H 1.08999 * 109.47237 * 306.64736 * 24 23 22 43 43 H 1.09005 * 109.46748 * 66.65171 * 24 23 22 44 44 H 1.09003 * 117.49736 * 215.00151 * 25 22 21 45 45 H 1.09000 * 117.49482 * 0.02562 * 25 22 21 46 46 H 1.08997 * 117.49464 * 107.49630 * 26 25 22 47 47 H 1.08993 * 117.49721 * 252.52483 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2577 2.1602 -1.0489 5 7 2.6795 3.3195 -0.6885 6 6 2.7413 3.3842 0.6206 7 7 3.1453 4.4755 1.3733 8 6 1.9970 5.1198 2.0247 9 6 3.8906 5.4365 0.5494 10 1 3.2548 5.7884 -0.2631 11 6 5.1311 4.7554 -0.0322 12 6 4.3129 6.6064 1.4002 13 1 4.0533 6.6335 2.4482 14 6 5.0299 7.6426 0.8406 15 7 5.3448 7.6103 -0.4359 16 14 5.5528 9.0931 1.8952 17 1 6.8869 8.8190 2.4873 18 1 5.6258 10.3153 1.0548 19 1 4.5616 9.2979 2.9817 20 7 2.3358 2.1731 1.1008 21 6 2.2394 1.7655 2.5046 22 6 3.5605 1.1306 2.9432 23 16 3.6724 -0.6676 2.7328 24 6 2.0260 -1.2403 3.2347 25 6 4.8386 1.9467 2.7389 26 6 4.2760 1.7476 4.1478 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.4214 4.3715 2.5696 33 1 2.3531 5.8808 2.7191 34 1 1.3645 5.5852 1.2688 35 1 4.8260 3.9090 -0.6475 36 1 5.6838 5.4683 -0.6440 37 1 5.7669 4.4035 0.7802 38 1 5.8496 8.3391 -0.8294 39 1 1.4329 1.0410 2.6180 40 1 2.0329 2.6389 3.1231 41 1 2.0127 -2.3300 3.2608 42 1 1.7920 -0.8503 4.2253 43 1 1.2841 -0.8849 2.5196 44 1 5.7466 1.4029 2.4781 45 1 4.7380 2.9359 2.2924 46 1 4.8139 1.0728 4.8137 47 1 3.8051 2.6055 4.6275 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001395923330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:42 Heat of formation + Delta-G solvation = 125.367477 kcal Electronic energy + Delta-G solvation = -27374.136018 eV Core-core repulsion = 23914.504821 eV Total energy + Delta-G solvation = -3459.631197 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.51066 -37.84707 -37.13239 -34.43123 -33.51910 -32.58229 -29.60649 -29.26157 -28.74845 -27.51116 -25.53903 -24.45956 -23.74772 -22.47760 -21.81727 -21.72065 -19.88655 -19.43644 -17.07308 -16.65222 -16.13412 -16.05926 -15.41309 -15.37903 -14.70760 -14.66526 -14.35331 -14.22695 -13.80154 -13.49420 -13.41268 -13.26026 -12.76637 -12.51689 -12.35557 -12.23665 -11.98848 -11.70434 -11.43994 -11.42737 -11.19920 -11.07877 -10.94512 -10.85840 -10.68122 -10.41295 -10.34152 -10.21742 -10.15642 -10.06835 -9.86131 -9.61499 -9.21955 -8.60524 -8.44529 -7.79271 -7.44283 -6.05359 -4.13221 1.42529 2.14967 2.34003 2.61166 3.27361 3.34240 3.35432 3.43897 3.62077 4.27884 4.31736 4.46962 4.55197 4.61641 4.73793 4.80407 4.84923 4.90468 4.98427 5.12777 5.20644 5.26931 5.35138 5.48652 5.53772 5.60062 5.61297 5.62816 5.75737 5.96815 5.99344 6.08569 6.09491 6.27044 6.35513 6.37690 6.47803 6.92537 6.97283 7.14700 7.25266 7.43796 7.69506 7.73147 7.95113 8.24627 8.44043 8.88952 9.39864 9.51843 11.00910 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.016817 B = 0.004362 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.619177 B = 6417.920966 C = 7293.969222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C 0.164 3.836 4 N -0.289 5.289 5 N -0.313 5.313 6 C 0.381 3.619 7 N -0.461 5.461 8 C 0.042 3.958 9 C 0.230 3.770 10 H 0.024 0.976 11 C -0.134 4.134 12 C -0.516 4.516 13 H 0.064 0.936 14 C 0.065 3.935 15 N -0.883 5.883 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.275 1.275 20 N -0.476 5.476 21 C 0.153 3.847 22 C -0.144 4.144 23 S -0.191 6.191 24 C -0.141 4.141 25 C -0.127 4.127 26 C -0.140 4.140 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.093 0.907 34 H 0.033 0.967 35 H 0.024 0.976 36 H 0.088 0.912 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.136 0.864 46 H 0.105 0.895 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.213 -16.636 9.892 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.081 4.081 3 C -0.104 4.104 4 N -0.128 5.128 5 N -0.157 5.157 6 C 0.025 3.975 7 N -0.186 5.186 8 C -0.105 4.105 9 C 0.126 3.874 10 H 0.042 0.958 11 C -0.192 4.192 12 C -0.555 4.555 13 H 0.082 0.918 14 C -0.138 4.138 15 N -0.520 5.520 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 N -0.172 5.172 21 C 0.027 3.973 22 C -0.255 4.255 23 S 0.039 5.961 24 C -0.309 4.309 25 C -0.166 4.166 26 C -0.181 4.181 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.107 0.893 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.154 0.846 46 H 0.123 0.877 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.848 -16.889 8.287 20.020 hybrid contribution -1.158 1.350 1.811 2.538 sum -8.006 -15.539 10.098 20.187 Atomic orbital electron populations 1.21776 0.94431 1.01884 1.02464 1.20117 0.95737 0.87344 1.04874 1.24458 1.05871 0.97345 0.82695 1.73958 1.15332 0.99369 1.24150 1.74803 1.20570 1.12528 1.07769 1.23057 0.97493 0.87513 0.89412 1.59228 1.20890 1.07580 1.30912 1.22294 0.90898 0.98279 0.99028 1.19337 0.90590 0.86737 0.90703 0.95826 1.21839 0.98809 0.99316 0.99265 1.21034 1.35872 1.02666 0.95922 0.91814 1.24891 0.95706 0.98214 0.94986 1.69923 1.38657 1.32407 1.11039 0.86499 0.78991 0.81824 0.80051 1.20630 1.21237 1.19948 1.46134 1.52576 1.11380 1.07147 1.21386 0.95016 1.00822 0.80084 1.23857 0.98174 0.93404 1.10054 1.86655 1.19340 1.02391 1.87714 1.23656 0.97382 1.05340 1.04539 1.23297 0.92983 1.01871 0.98412 1.23379 1.01856 1.02058 0.90837 0.93278 0.91693 0.91744 0.88693 0.89472 0.94099 0.88850 0.94796 0.95664 0.89321 0.95604 0.92737 0.89317 0.87666 0.87790 0.90110 0.90217 0.88410 0.84568 0.87682 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.90 37.16 0.37 -1.05 16 2 C -0.04 -0.48 6.17 -27.88 -0.17 -0.65 16 3 C 0.16 2.72 7.32 -154.02 -1.13 1.59 16 4 N -0.29 -6.03 12.18 32.99 0.40 -5.63 16 5 N -0.31 -7.25 9.82 30.31 0.30 -6.95 16 6 C 0.38 7.71 5.27 -318.88 -1.68 6.03 16 7 N -0.46 -9.51 3.45 -176.08 -0.61 -10.11 16 8 C 0.04 0.77 8.97 60.07 0.54 1.31 16 9 C 0.23 5.77 1.72 -68.87 -0.12 5.65 16 10 H 0.02 0.69 7.94 -51.93 -0.41 0.28 16 11 C -0.13 -3.43 8.79 37.16 0.33 -3.10 16 12 C -0.52 -13.42 7.97 -34.44 -0.27 -13.69 16 13 H 0.06 1.59 6.40 -52.49 -0.34 1.26 16 14 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 15 N -0.88 -24.97 11.32 55.43 0.63 -24.34 16 16 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 N -0.48 -7.75 2.63 -114.09 -0.30 -8.05 16 21 C 0.15 1.88 5.77 -4.04 -0.02 1.86 16 22 C -0.14 -1.74 2.44 -90.57 -0.22 -1.96 16 23 S -0.19 -2.10 21.00 -107.50 -2.26 -4.36 16 24 C -0.14 -1.01 9.30 101.05 0.94 -0.07 16 25 C -0.13 -1.84 9.68 -26.73 -0.26 -2.10 16 26 C -0.14 -1.56 9.95 -26.69 -0.27 -1.83 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.09 0.90 3.61 -51.93 -0.19 0.72 16 32 H 0.04 0.60 6.29 -51.93 -0.33 0.27 16 33 H 0.09 1.68 6.39 -51.93 -0.33 1.35 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.02 0.64 6.10 -51.93 -0.32 0.32 16 36 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 37 H 0.02 0.62 7.94 -51.93 -0.41 0.21 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.09 0.88 5.50 -51.93 -0.29 0.59 16 40 H 0.11 1.26 6.02 -51.93 -0.31 0.95 16 41 H 0.10 0.60 8.14 -51.92 -0.42 0.17 16 42 H 0.08 0.51 8.14 -51.92 -0.42 0.08 16 43 H 0.08 0.54 5.22 -51.92 -0.27 0.27 16 44 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.14 2.44 5.86 -51.93 -0.30 2.14 16 46 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.10 1.09 8.03 -51.93 -0.42 0.68 16 LS Contribution 372.75 15.07 5.62 5.62 Total: -1.00 -31.01 372.75 -10.47 -41.49 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.17 Total: 3.12 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.06 Total: -6.37 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.42 Total: -55.08 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -2.26 Total: -4.36 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.01 -10.47 -41.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395923330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.853 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds