Wall clock time and date at job start Tue Mar 31 2020 15:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47456 * 2 1 4 4 N 1.30296 * 126.34582 * 271.86434 * 3 2 1 5 5 N 1.28525 * 110.05229 * 179.97438 * 4 3 2 6 6 C 1.31218 * 109.86076 * 359.73899 * 5 4 3 7 7 N 1.38583 * 126.47066 * 180.25565 * 6 5 4 8 8 C 1.46905 * 110.99601 * 106.58632 * 7 6 5 9 9 C 1.46890 * 111.00459 * 342.62937 * 7 6 5 10 10 H 1.09004 * 109.47287 * 59.99564 * 9 7 6 11 11 C 1.53000 * 109.47384 * 299.99980 * 9 7 6 12 12 C 1.50700 * 109.47310 * 180.02562 * 9 7 6 13 13 H 1.07997 * 120.00185 * 359.97438 * 12 9 7 14 14 C 1.37879 * 120.00175 * 180.02562 * 12 9 7 15 15 N 1.31516 * 119.99824 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 120.00004 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.46709 * 90.00357 * 16 14 12 18 18 H 1.48507 * 109.47068 * 209.99901 * 16 14 12 19 19 H 1.48491 * 109.47160 * 330.00037 * 16 14 12 20 20 N 1.36446 * 107.05425 * 0.40750 * 6 5 4 21 21 C 1.46497 * 127.13786 * 179.86918 * 20 6 5 22 22 C 1.52998 * 109.47532 * 269.13706 * 21 20 6 23 23 S 1.81398 * 115.55278 * 268.86678 * 22 21 20 24 24 C 1.81400 * 102.99753 * 319.69442 * 23 22 21 25 25 C 1.53006 * 117.49595 * 54.53447 * 22 21 20 26 26 C 1.53004 * 60.03359 * 107.50164 * 25 22 21 27 27 H 1.09005 * 109.46655 * 300.00196 * 1 2 3 28 28 H 1.09002 * 109.46812 * 59.99800 * 1 2 3 29 29 H 1.08997 * 109.46907 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47056 * 239.99482 * 2 1 3 31 31 H 1.09002 * 109.46812 * 120.00200 * 2 1 3 32 32 H 1.09000 * 109.47239 * 51.95277 * 8 7 6 33 33 H 1.09004 * 109.47115 * 171.95292 * 8 7 6 34 34 H 1.08996 * 109.46740 * 291.94820 * 8 7 6 35 35 H 1.08994 * 109.47050 * 59.99483 * 11 9 7 36 36 H 1.08994 * 109.47489 * 179.97438 * 11 9 7 37 37 H 1.09004 * 109.47085 * 299.99920 * 11 9 7 38 38 H 0.97000 * 119.99749 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.47177 * 149.13764 * 21 20 6 40 40 H 1.09000 * 109.46996 * 29.13942 * 21 20 6 41 41 H 1.09007 * 109.47012 * 186.64846 * 24 23 22 42 42 H 1.08999 * 109.47237 * 306.64736 * 24 23 22 43 43 H 1.09005 * 109.46748 * 66.65171 * 24 23 22 44 44 H 1.09003 * 117.49736 * 215.00151 * 25 22 21 45 45 H 1.09000 * 117.49482 * 0.02562 * 25 22 21 46 46 H 1.08997 * 117.49464 * 107.49630 * 26 25 22 47 47 H 1.08993 * 117.49721 * 252.52483 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2577 2.1602 -1.0489 5 7 2.6795 3.3195 -0.6885 6 6 2.7413 3.3842 0.6206 7 7 3.1453 4.4755 1.3733 8 6 1.9970 5.1198 2.0247 9 6 3.8906 5.4365 0.5494 10 1 3.2548 5.7884 -0.2631 11 6 5.1311 4.7554 -0.0322 12 6 4.3129 6.6064 1.4002 13 1 4.0533 6.6335 2.4482 14 6 5.0299 7.6426 0.8406 15 7 5.3448 7.6103 -0.4359 16 14 5.5528 9.0931 1.8952 17 1 6.8869 8.8190 2.4873 18 1 5.6258 10.3153 1.0548 19 1 4.5616 9.2979 2.9817 20 7 2.3358 2.1731 1.1008 21 6 2.2394 1.7655 2.5046 22 6 3.5605 1.1306 2.9432 23 16 3.6724 -0.6676 2.7328 24 6 2.0260 -1.2403 3.2347 25 6 4.8386 1.9467 2.7389 26 6 4.2760 1.7476 4.1478 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.4214 4.3715 2.5696 33 1 2.3531 5.8808 2.7191 34 1 1.3645 5.5852 1.2688 35 1 4.8260 3.9090 -0.6475 36 1 5.6838 5.4683 -0.6440 37 1 5.7669 4.4035 0.7802 38 1 5.8496 8.3391 -0.8294 39 1 1.4329 1.0410 2.6180 40 1 2.0329 2.6389 3.1231 41 1 2.0127 -2.3300 3.2608 42 1 1.7920 -0.8503 4.2253 43 1 1.2841 -0.8849 2.5196 44 1 5.7466 1.4029 2.4781 45 1 4.7380 2.9359 2.2924 46 1 4.8139 1.0728 4.8137 47 1 3.8051 2.6055 4.6275 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001395923330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:42 Heat of formation + Delta-G solvation = 109.409704 kcal Electronic energy + Delta-G solvation = -27374.827999 eV Core-core repulsion = 23914.504821 eV Total energy + Delta-G solvation = -3460.323178 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.96425 -39.01234 -38.73319 -35.62390 -35.11557 -34.11537 -31.24252 -30.30132 -30.15798 -28.52261 -27.38549 -26.15556 -24.89921 -23.59439 -23.46687 -22.76479 -21.11576 -21.10732 -18.57001 -18.01174 -17.69096 -17.32817 -16.94500 -16.46470 -16.25162 -15.88453 -15.52462 -15.37408 -15.17874 -14.89201 -14.28387 -14.21227 -14.11630 -13.84399 -13.53774 -13.36117 -13.15489 -13.01451 -12.80706 -12.76040 -12.61532 -12.49905 -12.41465 -12.25034 -12.13175 -12.07944 -12.01277 -12.00817 -11.42807 -11.36248 -11.22748 -11.04018 -10.74220 -10.55795 -10.28462 -9.11490 -8.63066 -8.11475 -6.26690 0.61530 0.84252 1.27322 1.46114 1.46656 1.55731 1.57209 1.93347 2.41160 2.59799 3.03106 3.20217 3.31845 3.44672 3.49386 3.77203 3.92941 3.99426 4.00879 4.18413 4.31202 4.33115 4.39093 4.47271 4.52760 4.55507 4.58378 4.71111 4.77047 4.81840 4.83390 4.90542 4.96978 4.97320 5.01421 5.08047 5.15014 5.17792 5.25249 5.33032 5.44178 5.59773 5.66743 5.93217 6.00863 6.17098 6.60935 6.83900 7.42458 7.90279 8.95482 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.016817 B = 0.004362 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.619177 B = 6417.920966 C = 7293.969222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.040 4.040 3 C 0.187 3.813 4 N -0.337 5.337 5 N -0.368 5.368 6 C 0.370 3.630 7 N -0.451 5.451 8 C 0.043 3.957 9 C 0.245 3.755 10 H -0.026 1.026 11 C -0.114 4.114 12 C -0.522 4.522 13 H 0.077 0.923 14 C 0.012 3.988 15 N -0.921 5.921 16 Si 0.968 3.032 17 H -0.276 1.276 18 H -0.290 1.290 19 H -0.258 1.258 20 N -0.466 5.466 21 C 0.144 3.856 22 C -0.134 4.134 23 S -0.227 6.227 24 C -0.131 4.131 25 C -0.160 4.160 26 C -0.111 4.111 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.013 0.987 35 H 0.015 0.985 36 H 0.060 0.940 37 H 0.027 0.973 38 H 0.262 0.738 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.122 0.878 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.009 -18.769 13.401 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.082 4.082 4 N -0.175 5.175 5 N -0.211 5.211 6 C 0.013 3.987 7 N -0.175 5.175 8 C -0.104 4.104 9 C 0.139 3.861 10 H -0.008 1.008 11 C -0.173 4.173 12 C -0.560 4.560 13 H 0.095 0.905 14 C -0.187 4.187 15 N -0.559 5.559 16 Si 0.793 3.207 17 H -0.202 1.202 18 H -0.216 1.216 19 H -0.182 1.182 20 N -0.161 5.161 21 C 0.020 3.980 22 C -0.245 4.245 23 S 0.003 5.997 24 C -0.299 4.299 25 C -0.200 4.200 26 C -0.152 4.152 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.141 0.859 40 H 0.131 0.869 41 H 0.141 0.859 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.119 0.881 46 H 0.140 0.860 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.666 -19.049 11.828 24.038 hybrid contribution -0.658 1.837 0.704 2.074 sum -9.324 -17.212 12.532 23.243 Atomic orbital electron populations 1.21761 0.92134 1.04061 1.02003 1.20423 0.97506 0.84048 1.06003 1.25424 1.02633 0.98388 0.81795 1.73854 1.17858 0.99547 1.26278 1.74665 1.22311 1.14309 1.09830 1.22897 0.98259 0.88514 0.89025 1.59133 1.21838 1.06869 1.29690 1.22382 0.90150 0.99431 0.98463 1.18891 0.89745 0.87632 0.89823 1.00833 1.21585 0.98969 0.98072 0.98625 1.21342 1.35402 1.02826 0.96441 0.90529 1.25793 0.95754 1.01123 0.96047 1.70094 1.39566 1.33278 1.13008 0.85404 0.78859 0.77933 0.78503 1.20179 1.21564 1.18239 1.46246 1.51367 1.09741 1.08762 1.21824 0.96364 1.02153 0.77665 1.23780 0.96589 0.94097 1.10006 1.86870 1.23267 1.01348 1.88208 1.23776 0.94111 1.06461 1.05504 1.23039 0.94281 1.00772 1.01875 1.23454 1.00143 1.02180 0.89430 0.92393 0.93577 0.88223 0.88461 0.87428 0.90068 0.88617 0.96787 0.96564 0.92108 0.95356 0.92922 0.85866 0.86854 0.85867 0.88446 0.89345 0.89495 0.88145 0.85991 0.86639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.90 71.98 0.71 -1.51 16 2 C -0.04 -0.84 6.17 29.85 0.18 -0.65 16 3 C 0.19 6.08 7.32 137.64 1.01 7.08 16 4 N -0.34 -14.57 12.18 -49.54 -0.60 -15.17 16 5 N -0.37 -17.96 9.82 -58.01 -0.57 -18.53 16 6 C 0.37 15.40 5.27 260.11 1.37 16.77 16 7 N -0.45 -19.04 3.45 -711.01 -2.45 -21.49 16 8 C 0.04 1.53 8.97 127.69 1.15 2.67 16 9 C 0.24 12.91 1.72 44.17 0.08 12.98 16 10 H -0.03 -1.61 7.94 -2.39 -0.02 -1.63 16 11 C -0.11 -6.21 8.79 71.98 0.63 -5.58 16 12 C -0.52 -27.69 7.97 25.60 0.20 -27.49 16 13 H 0.08 3.79 6.40 -2.91 -0.02 3.77 16 14 C 0.01 0.66 5.30 84.65 0.45 1.11 16 15 N -0.92 -54.32 11.32 21.45 0.24 -54.08 16 16 Si 0.97 42.58 29.54 68.60 2.03 44.60 16 17 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 18 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 19 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 20 N -0.47 -14.73 2.63 -514.87 -1.36 -16.09 16 21 C 0.14 3.11 5.77 86.38 0.50 3.61 16 22 C -0.13 -2.93 2.44 -10.76 -0.03 -2.96 16 23 S -0.23 -4.32 21.00 -56.49 -1.19 -5.50 16 24 C -0.13 -1.20 9.30 113.37 1.05 -0.15 16 25 C -0.16 -4.63 9.68 30.60 0.30 -4.33 16 26 C -0.11 -2.20 9.95 30.62 0.30 -1.89 16 27 H 0.06 0.82 8.14 -2.38 -0.02 0.81 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.11 1.82 3.61 -2.39 -0.01 1.81 16 32 H 0.08 2.21 6.29 -2.39 -0.02 2.19 16 33 H 0.10 3.35 6.39 -2.39 -0.02 3.34 16 34 H 0.01 0.53 8.14 -2.39 -0.02 0.52 16 35 H 0.02 0.86 6.10 -2.39 -0.01 0.85 16 36 H 0.06 3.62 6.07 -2.39 -0.01 3.61 16 37 H 0.03 1.45 7.94 -2.39 -0.02 1.44 16 38 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 39 H 0.12 1.82 5.50 -2.38 -0.01 1.81 16 40 H 0.11 2.30 6.02 -2.39 -0.01 2.28 16 41 H 0.12 0.75 8.14 -2.39 -0.02 0.74 16 42 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.09 0.69 5.22 -2.39 -0.01 0.67 16 44 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.10 3.69 5.86 -2.39 -0.01 3.68 16 46 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.12 2.04 8.03 -2.39 -0.02 2.02 16 Total: -1.00 -73.88 372.75 4.99 -68.88 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.98 Total: 17.71 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 7.91 Total: -0.34 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -4.74 Total: -125.35 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: -4.32 SS G_CDS: -1.19 Total: -5.50 kcal Total: -73.88 4.99 -68.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395923330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.294 kcal (2) G-P(sol) polarization free energy of solvation -73.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds