Wall clock time and date at job start Tue Mar 31 2020 14:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30298 * 126.34945 * 2 1 4 4 N 1.28529 * 110.04966 * 180.02562 * 3 2 1 5 5 C 1.31217 * 109.86281 * 359.74001 * 4 3 2 6 6 N 1.38586 * 126.47100 * 180.25572 * 5 4 3 7 7 C 1.46902 * 110.99927 * 250.80424 * 6 5 4 8 8 C 1.46895 * 110.99814 * 14.75544 * 6 5 4 9 9 H 1.09004 * 109.47363 * 55.00288 * 8 6 5 10 10 C 1.52998 * 109.47376 * 294.99797 * 8 6 5 11 11 C 1.50706 * 109.46954 * 174.99897 * 8 6 5 12 12 H 1.08001 * 119.99525 * 359.97438 * 11 8 6 13 13 C 1.37871 * 120.00018 * 180.02562 * 11 8 6 14 14 N 1.31516 * 120.00212 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 120.00074 * 180.02562 * 13 11 8 16 16 H 1.48505 * 109.47032 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47347 * 119.99576 * 15 13 11 18 18 H 1.48504 * 109.46830 * 239.99673 * 15 13 11 19 19 N 1.36446 * 107.05316 * 0.40762 * 5 4 3 20 20 C 1.46503 * 127.13368 * 179.87689 * 19 5 4 21 21 C 1.52996 * 109.47472 * 83.95084 * 20 19 5 22 22 H 1.09004 * 109.67866 * 303.16703 * 21 20 19 23 23 C 1.53097 * 109.57972 * 182.85195 * 21 20 19 24 24 C 1.52577 * 109.95985 * 177.16709 * 23 21 20 25 25 C 1.52579 * 110.72609 * 70.66979 * 24 23 21 26 26 C 1.53093 * 109.95951 * 289.32469 * 25 24 23 27 27 S 1.81746 * 108.84060 * 63.02556 * 26 25 24 28 28 H 1.08997 * 109.47319 * 269.96392 * 1 2 3 29 29 H 1.08999 * 109.46618 * 29.96483 * 1 2 3 30 30 H 1.08998 * 109.47005 * 149.96163 * 1 2 3 31 31 H 1.08996 * 109.47082 * 53.82750 * 7 6 5 32 32 H 1.08997 * 109.46754 * 173.83269 * 7 6 5 33 33 H 1.08997 * 109.46790 * 293.83129 * 7 6 5 34 34 H 1.08997 * 109.46850 * 60.00590 * 10 8 6 35 35 H 1.09000 * 109.47193 * 180.02562 * 10 8 6 36 36 H 1.08996 * 109.47305 * 299.99864 * 10 8 6 37 37 H 0.96998 * 120.00250 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.46963 * 323.94354 * 20 19 5 39 39 H 1.09003 * 109.46645 * 203.94703 * 20 19 5 40 40 H 1.08992 * 109.38960 * 57.00940 * 23 21 20 41 41 H 1.09010 * 109.38604 * 297.31339 * 23 21 20 42 42 H 1.08999 * 109.22629 * 310.34916 * 24 23 21 43 43 H 1.09001 * 109.19067 * 190.97200 * 24 23 21 44 44 H 1.09009 * 109.38628 * 169.17868 * 25 24 23 45 45 H 1.08999 * 109.39312 * 49.47865 * 25 24 23 46 46 H 1.09005 * 109.57849 * 303.22217 * 26 25 24 47 47 H 1.08998 * 109.68385 * 182.90008 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6887 -0.0005 5 6 3.5945 -0.6209 0.0047 6 7 4.7580 -1.3738 0.0108 7 6 4.9586 -2.0433 -1.2813 8 6 5.9194 -0.5451 0.3602 9 1 5.7368 -0.0463 1.3121 10 6 6.1440 0.5041 -0.7304 11 6 7.1424 -1.4179 0.4771 12 1 7.0644 -2.4819 0.3090 13 6 8.3605 -0.8583 0.7995 14 7 8.4553 0.4373 1.0047 15 14 9.8765 -1.9401 0.9436 16 1 9.5059 -3.3512 0.6666 17 1 10.8978 -1.4943 -0.0379 18 1 10.4309 -1.8348 2.3173 19 7 2.3174 -1.1014 -0.0005 20 6 1.9009 -2.5060 -0.0002 21 6 1.8949 -3.0358 1.4350 22 1 2.8815 -2.9038 1.8792 23 6 1.5289 -4.5224 1.4316 24 6 1.5888 -5.0769 2.8518 25 6 0.4408 -4.5288 3.6943 26 6 0.6688 -3.0431 3.9849 27 16 0.6603 -2.1296 2.4137 28 1 -0.3634 -0.0006 1.0276 29 1 -0.3632 0.8903 -0.5133 30 1 -0.3633 -0.8896 -0.5144 31 1 4.9210 -1.3054 -2.0825 32 1 5.9302 -2.5373 -1.2874 33 1 4.1734 -2.7840 -1.4324 34 1 5.2595 1.1354 -0.8148 35 1 7.0060 1.1188 -0.4714 36 1 6.3267 0.0054 -1.6822 37 1 9.3123 0.8311 1.2312 38 1 2.5970 -3.0914 -0.6008 39 1 0.8991 -2.5879 -0.4219 40 1 2.2316 -5.0666 0.8006 41 1 0.5202 -4.6458 1.0371 42 1 2.5368 -4.7925 3.3085 43 1 1.5200 -6.1641 2.8152 44 1 0.3880 -5.0776 4.6347 45 1 -0.4968 -4.6518 3.1521 46 1 1.6315 -2.9111 4.4788 47 1 -0.1266 -2.6688 4.6293 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411693613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:12 Heat of formation + Delta-G solvation = 87.129553 kcal Electronic energy + Delta-G solvation = -26907.982703 eV Core-core repulsion = 23446.693385 eV Total energy + Delta-G solvation = -3461.289318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.40084 -37.49867 -37.25033 -35.21807 -32.87720 -31.93482 -31.18720 -28.77352 -28.39785 -27.28852 -25.49798 -25.07506 -24.78072 -22.44267 -21.61453 -21.04944 -20.19775 -19.41229 -17.12577 -16.67032 -16.03751 -16.00436 -15.47322 -15.19834 -14.93989 -14.59870 -14.19921 -13.98780 -13.68747 -13.49861 -13.36710 -13.08447 -13.06192 -12.71709 -12.44685 -12.24724 -12.20569 -11.74565 -11.54935 -11.49100 -11.31380 -11.18345 -11.10833 -10.92938 -10.76786 -10.69590 -10.33303 -10.12665 -10.05172 -9.78055 -9.69303 -9.60054 -8.79146 -8.69171 -8.38887 -7.72868 -7.36331 -6.01958 -4.09351 1.57253 2.29542 2.39703 2.72179 3.27658 3.35429 3.37878 3.51492 4.27504 4.36028 4.41585 4.50662 4.61551 4.66419 4.72996 4.82360 4.84979 5.01690 5.09326 5.23384 5.29499 5.30818 5.36440 5.46613 5.55507 5.64942 5.68417 5.70313 5.74470 5.75706 5.90219 5.98488 6.00124 6.11116 6.29118 6.41984 6.54830 6.88723 7.09779 7.20716 7.37656 7.56179 7.71398 7.77662 8.00791 8.34305 8.51307 8.92782 9.46855 9.55294 11.04173 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.012900 B = 0.004473 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.004175 B = 6258.575929 C = 7570.809777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.164 3.836 3 N -0.294 5.294 4 N -0.312 5.312 5 C 0.380 3.620 6 N -0.457 5.457 7 C 0.036 3.964 8 C 0.230 3.770 9 H 0.047 0.953 10 C -0.179 4.179 11 C -0.513 4.513 12 H 0.063 0.937 13 C 0.064 3.936 14 N -0.883 5.883 15 Si 0.898 3.102 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.483 5.483 20 C 0.136 3.864 21 C -0.067 4.067 22 H 0.106 0.894 23 C -0.112 4.112 24 C -0.129 4.129 25 C -0.119 4.119 26 C -0.088 4.088 27 S -0.248 6.248 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.031 0.969 32 H 0.096 0.904 33 H 0.043 0.957 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.019 0.981 37 H 0.261 0.739 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.350 -12.083 0.598 21.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.103 4.103 3 N -0.133 5.133 4 N -0.155 5.155 5 C 0.024 3.976 6 N -0.181 5.181 7 C -0.111 4.111 8 C 0.126 3.874 9 H 0.065 0.935 10 C -0.238 4.238 11 C -0.551 4.551 12 H 0.081 0.919 13 C -0.139 4.139 14 N -0.521 5.521 15 Si 0.725 3.275 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 N -0.180 5.180 20 C 0.010 3.990 21 C -0.197 4.197 22 H 0.124 0.876 23 C -0.152 4.152 24 C -0.166 4.166 25 C -0.158 4.158 26 C -0.237 4.237 27 S -0.021 6.021 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.115 0.885 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.405 -9.938 0.723 20.929 hybrid contribution 1.462 -2.432 0.114 2.840 sum -16.942 -12.370 0.837 20.994 Atomic orbital electron populations 1.20083 0.84654 1.03129 1.03611 1.24464 0.96046 0.82630 1.07175 1.73968 0.97173 1.24250 1.17947 1.74840 1.10324 1.07481 1.22817 1.23175 0.84782 0.89400 1.00216 1.59383 1.00444 1.29732 1.28563 1.22358 1.02798 0.97463 0.88527 1.19331 0.83266 0.89482 0.95314 0.93475 1.22546 1.03150 1.00729 0.97372 1.21059 0.91782 0.93985 1.48309 0.91874 1.24891 0.98790 0.95009 0.95205 1.69939 1.25103 1.10036 1.47025 0.86458 0.82829 0.80493 0.77679 1.19811 1.21034 1.21021 1.46143 1.06311 1.07241 1.58285 1.21578 1.02381 0.79590 0.95412 1.23702 1.01615 0.97135 0.97220 0.87568 1.21703 1.02817 0.92665 0.97983 1.21504 0.99232 1.00904 0.95005 1.21706 0.99439 0.94051 1.00601 1.23475 1.05732 0.97442 0.97014 1.86966 1.54358 1.46257 1.14507 0.89676 0.89524 0.91367 0.94996 0.88506 0.93832 0.92826 0.89475 0.96232 0.92856 0.87585 0.88551 0.90317 0.90525 0.91350 0.90893 0.90996 0.90724 0.89837 0.87955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.65 9.49 36.01 0.34 -0.31 16 2 C 0.16 2.79 7.44 -154.01 -1.15 1.64 16 3 N -0.29 -6.28 12.18 32.99 0.40 -5.88 16 4 N -0.31 -7.35 8.95 30.31 0.27 -7.08 16 5 C 0.38 7.97 6.66 -318.88 -2.12 5.85 16 6 N -0.46 -9.86 4.77 -176.09 -0.84 -10.70 16 7 C 0.04 0.67 8.57 60.07 0.51 1.18 16 8 C 0.23 5.96 2.08 -68.87 -0.14 5.81 16 9 H 0.05 1.41 8.11 -51.93 -0.42 0.99 16 10 C -0.18 -4.63 8.28 37.16 0.31 -4.33 16 11 C -0.51 -13.70 7.79 -34.44 -0.27 -13.97 16 12 H 0.06 1.64 6.82 -52.49 -0.36 1.28 16 13 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 14 N -0.88 -25.42 11.32 55.43 0.63 -24.80 16 15 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 N -0.48 -8.01 2.60 -114.08 -0.30 -8.31 16 20 C 0.14 1.62 5.45 -4.04 -0.02 1.60 16 21 C -0.07 -0.78 2.78 -26.68 -0.07 -0.85 16 22 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 23 C -0.11 -0.94 5.04 -26.90 -0.14 -1.08 16 24 C -0.13 -1.04 5.61 -27.16 -0.15 -1.19 16 25 C -0.12 -0.90 5.75 -26.90 -0.15 -1.05 16 26 C -0.09 -0.84 6.45 37.21 0.24 -0.60 16 27 S -0.25 -2.95 19.11 -107.50 -2.05 -5.00 16 28 H 0.08 0.99 7.19 -51.93 -0.37 0.62 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.64 7.18 -51.93 -0.37 0.26 16 31 H 0.03 0.61 6.84 -51.93 -0.35 0.26 16 32 H 0.10 1.86 6.28 -51.93 -0.33 1.54 16 33 H 0.04 0.64 5.96 -51.93 -0.31 0.33 16 34 H 0.05 1.39 5.39 -51.93 -0.28 1.11 16 35 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 36 H 0.02 0.47 6.62 -51.93 -0.34 0.13 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 38 H 0.11 1.20 5.90 -51.93 -0.31 0.89 16 39 H 0.10 0.91 7.10 -51.93 -0.37 0.55 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.56 8.06 -51.92 -0.42 0.14 16 42 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 45 H 0.07 0.54 8.06 -51.93 -0.42 0.12 16 46 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 47 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 365.43 15.07 5.51 5.51 Total: -1.00 -32.20 365.43 -11.79 -43.99 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.48 Total: 2.01 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -2.91 Total: -5.65 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.16 Total: -56.76 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -2.95 SS G_CDS: -2.05 Total: -5.00 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.20 -11.79 -43.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411693613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.118 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds