Wall clock time and date at job start Tue Mar 31 2020 15:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.46924 * 2 1 4 4 N 1.30294 * 126.34702 * 281.52192 * 3 2 1 5 5 N 1.28525 * 110.05613 * 180.02562 * 4 3 2 6 6 C 1.31224 * 109.85753 * 359.74502 * 5 4 3 7 7 N 1.38588 * 126.47139 * 180.25777 * 6 5 4 8 8 C 1.46894 * 110.99932 * 245.74231 * 7 6 5 9 9 C 1.46893 * 110.99929 * 9.69851 * 7 6 5 10 10 H 1.09003 * 109.47414 * 55.00326 * 9 7 6 11 11 C 1.52998 * 109.47401 * 294.99840 * 9 7 6 12 12 C 1.50698 * 109.46806 * 174.99989 * 9 7 6 13 13 H 1.07999 * 120.00346 * 4.98233 * 12 9 7 14 14 C 1.37885 * 119.99980 * 184.98405 * 12 9 7 15 15 N 1.31516 * 120.00010 * 5.47762 * 14 12 9 16 16 Si 1.86799 * 119.99896 * 185.47912 * 14 12 9 17 17 H 1.48506 * 109.46950 * 94.99802 * 16 14 12 18 18 H 1.48502 * 109.47082 * 214.99432 * 16 14 12 19 19 H 1.48500 * 109.47434 * 334.99657 * 16 14 12 20 20 N 1.36455 * 107.05259 * 0.40388 * 6 5 4 21 21 C 1.46494 * 127.13163 * 179.87464 * 20 6 5 22 22 C 1.53002 * 109.47236 * 83.49123 * 21 20 6 23 23 H 1.08996 * 110.69587 * 310.78163 * 22 21 20 24 24 C 1.54263 * 110.78346 * 187.47344 * 22 21 20 25 25 C 1.52340 * 112.58232 * 217.19442 * 24 22 21 26 26 C 1.54256 * 112.58915 * 0.02562 * 25 24 22 27 27 S 1.83952 * 110.79104 * 74.09965 * 22 21 20 28 28 H 1.09004 * 109.47363 * 307.44319 * 1 2 3 29 29 H 1.08998 * 109.47220 * 67.44028 * 1 2 3 30 30 H 1.09000 * 109.47335 * 187.45118 * 1 2 3 31 31 H 1.08996 * 109.47318 * 239.99955 * 2 1 3 32 32 H 1.09005 * 109.47224 * 119.99765 * 2 1 3 33 33 H 1.08998 * 109.47063 * 61.52018 * 8 7 6 34 34 H 1.09000 * 109.46945 * 181.52443 * 8 7 6 35 35 H 1.09003 * 109.47471 * 301.52554 * 8 7 6 36 36 H 1.09000 * 109.46792 * 304.65916 * 11 9 7 37 37 H 1.08996 * 109.47328 * 64.65865 * 11 9 7 38 38 H 1.08996 * 109.47420 * 184.65793 * 11 9 7 39 39 H 0.96995 * 119.99735 * 180.02562 * 15 14 12 40 40 H 1.09005 * 109.46668 * 203.48708 * 21 20 6 41 41 H 1.09002 * 109.47716 * 323.48189 * 21 20 6 42 42 H 1.08997 * 108.87187 * 338.01150 * 24 22 21 43 43 H 1.08997 * 108.87002 * 96.38194 * 24 22 21 44 44 H 1.08999 * 108.86436 * 120.82119 * 25 24 22 45 45 H 1.08999 * 108.86700 * 239.18166 * 25 24 22 46 46 H 1.08999 * 110.78781 * 142.79982 * 26 25 24 47 47 H 1.08998 * 110.78879 * 266.06495 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.0920 2.2187 -1.0283 5 7 2.5716 3.3577 -0.6751 6 6 2.8407 3.3491 0.6092 7 7 3.3646 4.3980 1.3481 8 6 4.7070 4.0714 1.8473 9 6 3.3828 5.6385 0.5616 10 1 2.3800 5.8471 0.1887 11 6 4.3431 5.4800 -0.6189 12 6 3.8419 6.7791 1.4330 13 1 4.1716 6.5878 2.4435 14 6 3.8411 8.0668 0.9402 15 7 3.3397 8.3152 -0.2500 16 14 4.5522 9.4587 1.9631 17 1 5.9664 9.6880 1.5720 18 1 3.7667 10.6969 1.7283 19 1 4.4890 9.0978 3.4022 20 7 2.5104 2.1113 1.0790 21 6 2.6359 1.6254 2.4553 22 6 1.4132 2.0630 3.2643 23 1 1.2204 3.1268 3.1258 24 6 1.5982 1.7302 4.7592 25 6 0.3038 1.2766 5.4221 26 6 -0.8878 1.2560 4.4427 27 16 -0.0637 1.0668 2.8061 28 1 -0.3634 0.6248 0.8159 29 1 -0.3633 0.3942 -0.9490 30 1 -0.3634 -1.0190 0.1333 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.3760 3.8987 1.0043 34 1 5.0836 4.9007 2.4461 35 1 4.6574 3.1725 2.4618 36 1 5.3271 5.1903 -0.2503 37 1 3.9666 4.7106 -1.2928 38 1 4.4199 6.4262 -1.1544 39 1 3.3395 9.2210 -0.5967 40 1 2.6988 0.5371 2.4520 41 1 3.5375 2.0399 2.9063 42 1 2.3398 0.9372 4.8546 43 1 1.9663 2.6171 5.2749 44 1 0.4465 0.2737 5.8243 45 1 0.0729 1.9536 6.2445 46 1 -1.5428 0.4093 4.6481 47 1 -1.4431 2.1928 4.4893 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417489222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:26 Heat of formation + Delta-G solvation = 75.502479 kcal Electronic energy + Delta-G solvation = -26940.096779 eV Core-core repulsion = 23478.303273 eV Total energy + Delta-G solvation = -3461.793506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.93596 -39.10201 -37.84077 -35.90722 -35.07576 -34.21648 -31.62921 -30.79642 -30.06156 -27.68623 -27.25295 -26.85783 -24.98003 -24.72527 -23.34879 -21.43442 -21.24674 -21.08984 -18.44637 -17.93804 -17.81327 -17.30452 -17.13007 -16.46020 -16.07288 -15.99495 -15.63050 -15.28778 -15.16874 -14.83603 -14.77467 -14.40412 -13.83185 -13.63588 -13.52793 -13.27276 -13.21168 -13.17294 -12.93374 -12.74358 -12.69861 -12.53749 -12.49511 -12.29328 -12.23660 -12.03877 -12.00847 -11.86703 -11.39095 -11.35293 -11.05541 -10.84564 -10.52338 -10.44205 -10.36051 -9.02997 -8.69377 -8.13904 -6.26681 0.81901 0.87677 1.33549 1.35790 1.45092 1.45344 1.56405 1.95092 2.41927 3.00029 3.18806 3.35712 3.50976 3.60410 3.68250 3.88743 3.98636 4.00128 4.15029 4.25401 4.32053 4.35258 4.40926 4.49444 4.52261 4.64569 4.67628 4.72462 4.80669 4.83243 4.94875 5.00580 5.01017 5.08142 5.09441 5.10336 5.21440 5.23872 5.25766 5.46141 5.51026 5.58157 5.63773 5.86924 6.08146 6.17789 6.61428 6.83386 7.41624 7.92074 8.95501 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.004329 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.339418 B = 6466.067341 C = 7697.385031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.022 4.022 3 C 0.184 3.816 4 N -0.337 5.337 5 N -0.366 5.366 6 C 0.366 3.634 7 N -0.453 5.453 8 C 0.033 3.967 9 C 0.243 3.757 10 H -0.001 1.001 11 C -0.154 4.154 12 C -0.521 4.521 13 H 0.075 0.925 14 C 0.011 3.989 15 N -0.923 5.923 16 Si 0.968 3.032 17 H -0.275 1.275 18 H -0.289 1.289 19 H -0.259 1.259 20 N -0.476 5.476 21 C 0.124 3.876 22 C -0.051 4.051 23 H 0.069 0.931 24 C -0.113 4.113 25 C -0.117 4.117 26 C -0.079 4.079 27 S -0.300 6.300 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.026 0.974 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.035 0.965 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.262 0.738 40 H 0.134 0.866 41 H 0.120 0.880 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.119 0.881 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.982 -21.041 14.833 25.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.062 4.062 3 C -0.085 4.085 4 N -0.175 5.175 5 N -0.209 5.209 6 C 0.008 3.992 7 N -0.176 5.176 8 C -0.114 4.114 9 C 0.137 3.863 10 H 0.017 0.983 11 C -0.214 4.214 12 C -0.560 4.560 13 H 0.093 0.907 14 C -0.188 4.188 15 N -0.561 5.561 16 Si 0.793 3.207 17 H -0.200 1.200 18 H -0.215 1.215 19 H -0.183 1.183 20 N -0.172 5.172 21 C 0.001 3.999 22 C -0.181 4.181 23 H 0.088 0.912 24 C -0.153 4.153 25 C -0.156 4.156 26 C -0.226 4.226 27 S -0.072 6.072 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.044 0.956 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.152 0.848 41 H 0.138 0.862 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.113 0.887 45 H 0.101 0.899 46 H 0.137 0.863 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.758 -20.877 12.712 24.730 hybrid contribution 0.848 1.717 1.296 2.312 sum -2.910 -19.160 14.008 23.912 Atomic orbital electron populations 1.21964 0.93298 1.03662 1.01663 1.20117 0.96974 0.83732 1.05335 1.25463 1.01312 0.99030 0.82698 1.73837 1.18961 0.98399 1.26329 1.74689 1.21517 1.15577 1.09132 1.23114 1.01153 0.85814 0.89103 1.59261 1.23558 0.99920 1.34902 1.22529 0.86356 1.02905 0.99560 1.18877 0.94372 0.83447 0.89628 0.98335 1.22232 0.98497 1.00592 1.00044 1.21332 1.43864 0.91164 0.99613 0.90720 1.25819 0.95415 1.01306 0.96274 1.70152 1.45436 1.21236 1.19309 0.85395 0.78111 0.77919 0.79303 1.20044 1.21523 1.18251 1.46321 1.49560 1.10347 1.10946 1.22202 0.98629 1.02559 0.76494 1.24274 0.94116 1.00747 0.98931 0.91231 1.22038 0.99938 1.03764 0.89552 1.21940 0.91303 1.04198 0.98181 1.24389 1.00500 1.05688 0.92039 1.88464 1.26240 1.68716 1.23829 0.91292 0.93976 0.89022 0.87992 0.87542 0.95566 0.88921 0.89407 0.94578 0.93697 0.93623 0.92930 0.84825 0.86241 0.87992 0.89983 0.88653 0.89898 0.86259 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.49 71.98 0.68 -2.54 16 2 C -0.02 -0.48 6.14 29.85 0.18 -0.30 16 3 C 0.18 6.12 7.31 137.64 1.01 7.13 16 4 N -0.34 -14.81 12.18 -49.54 -0.60 -15.41 16 5 N -0.37 -18.08 9.07 -57.99 -0.53 -18.61 16 6 C 0.37 15.61 6.72 260.10 1.75 17.36 16 7 N -0.45 -19.76 4.78 -711.02 -3.40 -23.15 16 8 C 0.03 1.15 8.71 127.69 1.11 2.27 16 9 C 0.24 13.06 1.93 44.17 0.09 13.14 16 10 H 0.00 -0.09 8.06 -2.39 -0.02 -0.11 16 11 C -0.15 -8.24 8.44 71.98 0.61 -7.64 16 12 C -0.52 -28.26 7.95 25.60 0.20 -28.06 16 13 H 0.07 3.79 6.57 -2.91 -0.02 3.77 16 14 C 0.01 0.62 5.23 84.66 0.44 1.06 16 15 N -0.92 -55.51 11.93 21.45 0.26 -55.26 16 16 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 20 N -0.48 -15.30 2.80 -514.84 -1.44 -16.74 16 21 C 0.12 2.59 5.25 86.38 0.45 3.04 16 22 C -0.05 -1.09 3.53 31.02 0.11 -0.98 16 23 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 24 C -0.11 -1.47 5.93 30.80 0.18 -1.29 16 25 C -0.12 -1.25 6.31 30.80 0.19 -1.05 16 26 C -0.08 -1.14 7.47 72.41 0.54 -0.60 16 27 S -0.30 -6.27 18.43 -56.49 -1.04 -7.31 16 28 H 0.07 1.75 3.92 -17.97 -0.07 1.68 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.11 1.67 6.89 -2.38 -0.02 1.66 16 33 H 0.03 0.96 6.32 -2.39 -0.02 0.95 16 34 H 0.09 3.27 6.37 -2.39 -0.02 3.26 16 35 H 0.09 2.27 5.35 -2.39 -0.01 2.25 16 36 H 0.04 1.76 6.19 -2.39 -0.01 1.74 16 37 H 0.04 2.44 5.65 -2.39 -0.01 2.43 16 38 H 0.04 2.67 6.60 -2.39 -0.02 2.65 16 39 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 40 H 0.13 1.92 6.89 -2.38 -0.02 1.90 16 41 H 0.12 2.19 5.44 -2.39 -0.01 2.18 16 42 H 0.10 0.84 7.78 -2.39 -0.02 0.83 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -76.12 364.06 3.74 -72.38 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.92 Total: 17.46 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 7.55 Total: 1.53 kcal Atomic # 7 Polarization: -123.46 SS G_CDS: -5.71 Total: -129.17 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -6.27 SS G_CDS: -1.04 Total: -7.31 kcal Total: -76.12 3.74 -72.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417489222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.878 kcal (2) G-P(sol) polarization free energy of solvation -76.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds