Wall clock time and date at job start Tue Mar 31 2020 15:12:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50699 * 109.46959 * 2 1
4 4 N 1.30302 * 126.34854 * 276.47523 * 3 2 1
5 5 N 1.28522 * 110.05296 * 180.31223 * 4 3 2
6 6 C 1.31212 * 109.86395 * 359.71430 * 5 4 3
7 7 N 1.38580 * 126.47676 * 179.97438 * 6 5 4
8 8 C 1.46907 * 110.99883 * 110.56243 * 7 6 5
9 9 C 1.46902 * 111.00103 * 346.60817 * 7 6 5
10 10 H 1.09001 * 109.46820 * 59.99786 * 9 7 6
11 11 C 1.52998 * 109.46954 * 300.00166 * 9 7 6
12 12 C 1.50695 * 109.47289 * 179.97438 * 9 7 6
13 13 H 1.08008 * 119.99917 * 33.80066 * 12 9 7
14 14 C 1.37873 * 120.00327 * 213.79034 * 12 9 7
15 15 N 1.31517 * 120.00222 * 182.61373 * 14 12 9
16 16 Si 1.86796 * 119.99945 * 2.61908 * 14 12 9
17 17 H 1.48499 * 109.47503 * 92.20478 * 16 14 12
18 18 H 1.48495 * 109.47296 * 212.21054 * 16 14 12
19 19 H 1.48504 * 109.46885 * 332.21141 * 16 14 12
20 20 N 1.36460 * 107.05145 * 0.02562 * 6 5 4
21 21 C 1.46500 * 127.13399 * 180.02562 * 20 6 5
22 22 C 1.53008 * 109.46948 * 275.69942 * 21 20 6
23 23 H 1.09000 * 109.59911 * 54.85620 * 22 21 20
24 24 C 1.52937 * 109.59893 * 175.18295 * 22 21 20
25 25 C 1.53712 * 112.48724 * 149.84951 * 24 22 21
26 26 S 1.83397 * 105.05936 * 357.12230 * 25 24 22
27 27 C 1.55149 * 109.45207 * 294.62793 * 22 21 20
28 28 H 1.09006 * 109.47233 * 179.97438 * 1 2 3
29 29 H 1.08994 * 109.47428 * 300.00037 * 1 2 3
30 30 H 1.09003 * 109.47498 * 60.00135 * 1 2 3
31 31 H 1.09003 * 109.47261 * 240.00209 * 2 1 3
32 32 H 1.08997 * 109.47267 * 119.99497 * 2 1 3
33 33 H 1.08991 * 109.46957 * 52.40363 * 8 7 6
34 34 H 1.09000 * 109.46894 * 172.40202 * 8 7 6
35 35 H 1.09001 * 109.46765 * 292.40227 * 8 7 6
36 36 H 1.09000 * 109.46913 * 186.67287 * 11 9 7
37 37 H 1.09001 * 109.47042 * 306.66640 * 11 9 7
38 38 H 1.08993 * 109.47626 * 66.66831 * 11 9 7
39 39 H 0.96999 * 119.99737 * 180.02562 * 15 14 12
40 40 H 1.09001 * 109.47003 * 155.70063 * 21 20 6
41 41 H 1.08997 * 109.47882 * 35.70059 * 21 20 6
42 42 H 1.08993 * 108.89291 * 29.05911 * 24 22 21
43 43 H 1.09003 * 108.77802 * 270.56273 * 24 22 21
44 44 H 1.09008 * 110.34209 * 116.04533 * 25 24 22
45 45 H 1.08996 * 110.34020 * 238.19401 * 25 24 22
46 46 H 1.08996 * 111.13488 * 316.63292 * 27 22 21
47 47 H 1.09005 * 111.12966 * 80.76787 * 27 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.1781 2.1884 -1.0428
5 7 2.6338 3.3357 -0.6852
6 6 2.7988 3.3640 0.6162
7 7 3.2723 4.4306 1.3636
8 6 2.2053 5.0075 2.1924
9 6 3.8775 5.4521 0.4986
10 1 3.1308 5.8219 -0.2042
11 6 5.0460 4.8381 -0.2751
12 6 4.3792 6.5938 1.3446
13 1 4.7725 6.4019 2.3321
14 6 4.3364 7.8831 0.8582
15 7 4.8212 8.8731 1.5755
16 14 3.5895 8.2240 -0.8197
17 1 2.1491 8.5496 -0.6635
18 1 4.2908 9.3711 -1.4499
19 1 3.7347 7.0220 -1.6795
20 7 2.4171 2.1443 1.0945
21 6 2.4231 1.7006 2.4907
22 6 3.8184 1.1913 2.8580
23 1 4.5575 1.9631 2.6433
24 6 3.8609 0.8397 4.3458
25 6 4.8506 -0.2955 4.6535
26 16 5.5108 -0.8077 3.0209
27 6 4.1387 -0.0809 2.0298
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3634 0.5138 0.8899
30 1 -0.3634 0.5138 -0.8900
31 1 1.8934 -0.5138 -0.8900
32 1 1.8933 -0.5137 0.8900
33 1 1.7312 4.2181 2.7755
34 1 2.6306 5.7513 2.8661
35 1 1.4625 5.4811 1.5504
36 1 5.5683 5.6205 -0.8256
37 1 5.7350 4.3636 0.4237
38 1 4.6671 4.0928 -0.9743
39 1 4.7907 9.7802 1.2334
40 1 1.6975 0.8974 2.6197
41 1 2.1591 2.5362 3.1388
42 1 2.8643 0.5350 4.6651
43 1 4.1552 1.7262 4.9076
44 1 5.6567 0.0671 5.2914
45 1 4.3351 -1.1282 5.1320
46 1 3.2816 -0.7535 1.9953
47 1 4.4725 0.1780 1.0250
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001460443397.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:12:33
Heat of formation + Delta-G solvation = 85.162806 kcal
Electronic energy + Delta-G solvation = -27071.522369 eV
Core-core repulsion = 23610.147767 eV
Total energy + Delta-G solvation = -3461.374603 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 324.168 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-42.69352 -37.69595 -37.34055 -34.38182 -33.68764 -32.52544 -30.33131 -29.92903
-28.86597 -27.53181 -25.62595 -24.69718 -24.16561 -23.88246 -21.80291 -20.73090
-20.11185 -19.31021 -17.37189 -17.00821 -16.82803 -15.95598 -15.77311 -15.31490
-14.98467 -14.59257 -14.34525 -14.20765 -14.06073 -13.75367 -13.63538 -13.08901
-12.70687 -12.57661 -12.50871 -12.34583 -12.18498 -12.06932 -11.86932 -11.73675
-11.48167 -11.38696 -11.08081 -10.95929 -10.94009 -10.72918 -10.59776 -10.42974
-10.30871 -10.08259 -9.81413 -9.68543 -9.41840 -8.79967 -8.65531 -7.92443
-7.57637 -6.18552 -4.20024 1.58381 2.04436 2.10493 2.50044 3.24561
3.27021 3.36234 3.46750 4.07340 4.18675 4.33505 4.36180 4.37553
4.54464 4.60363 4.66672 4.75774 4.86238 5.01111 5.07277 5.07813
5.17509 5.23135 5.33148 5.34386 5.45783 5.49898 5.51684 5.61198
5.66030 5.86801 5.90056 5.97324 6.00326 6.14781 6.22680 6.47298
6.51245 6.71994 6.73307 6.93423 7.02071 7.26722 7.44457 7.65321
7.93447 8.48818 8.87200 9.21170 9.44063 10.93009
Molecular weight = 324.17amu
Principal moments of inertia in cm(-1)
A = 0.013218 B = 0.004482 C = 0.003754
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2117.821645 B = 6246.074334 C = 7457.565017
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.032 4.032
3 C 0.153 3.847
4 N -0.285 5.285
5 N -0.324 5.324
6 C 0.382 3.618
7 N -0.453 5.453
8 C 0.044 3.956
9 C 0.195 3.805
10 H 0.027 0.973
11 C -0.137 4.137
12 C -0.511 4.511
13 H 0.082 0.918
14 C 0.080 3.920
15 N -0.891 5.891
16 Si 0.863 3.137
17 H -0.277 1.277
18 H -0.285 1.285
19 H -0.254 1.254
20 N -0.482 5.482
21 C 0.122 3.878
22 C -0.108 4.108
23 H 0.107 0.893
24 C -0.121 4.121
25 C -0.067 4.067
26 S -0.295 6.295
27 C -0.061 4.061
28 H 0.064 0.936
29 H 0.052 0.948
30 H 0.064 0.936
31 H 0.095 0.905
32 H 0.077 0.923
33 H 0.045 0.955
34 H 0.102 0.898
35 H 0.031 0.969
36 H 0.052 0.948
37 H 0.043 0.957
38 H 0.042 0.958
39 H 0.266 0.734
40 H 0.092 0.908
41 H 0.102 0.898
42 H 0.074 0.926
43 H 0.088 0.912
44 H 0.100 0.900
45 H 0.090 0.910
46 H 0.091 0.909
47 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.348 -20.054 6.268 22.258
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.072 4.072
3 C -0.114 4.114
4 N -0.124 5.124
5 N -0.168 5.168
6 C 0.027 3.973
7 N -0.177 5.177
8 C -0.103 4.103
9 C 0.091 3.909
10 H 0.045 0.955
11 C -0.195 4.195
12 C -0.549 4.549
13 H 0.100 0.900
14 C -0.124 4.124
15 N -0.528 5.528
16 Si 0.690 3.310
17 H -0.203 1.203
18 H -0.211 1.211
19 H -0.178 1.178
20 N -0.179 5.179
21 C -0.003 4.003
22 C -0.129 4.129
23 H 0.125 0.875
24 C -0.160 4.160
25 C -0.215 4.215
26 S -0.068 6.068
27 C -0.209 4.209
28 H 0.083 0.917
29 H 0.071 0.929
30 H 0.083 0.917
31 H 0.113 0.887
32 H 0.095 0.905
33 H 0.063 0.937
34 H 0.120 0.880
35 H 0.049 0.951
36 H 0.071 0.929
37 H 0.062 0.938
38 H 0.061 0.939
39 H 0.076 0.924
40 H 0.110 0.890
41 H 0.120 0.880
42 H 0.093 0.907
43 H 0.107 0.893
44 H 0.119 0.881
45 H 0.108 0.892
46 H 0.109 0.891
47 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -5.920 -20.137 4.848 21.541
hybrid contribution -1.742 0.876 0.436 1.998
sum -7.662 -19.260 5.284 21.391
Atomic orbital electron populations
1.21746 0.93939 1.02044 1.02723 1.19979 0.96421 0.86926 1.03867
1.24493 1.06073 0.97834 0.83011 1.73930 1.15452 0.98845 1.24151
1.74757 1.20300 1.13513 1.08276 1.23223 0.96708 0.87429 0.89950
1.59266 1.27095 1.08332 1.23050 1.22284 0.91978 0.98922 0.97157
1.19805 0.92565 0.87908 0.90640 0.95549 1.21981 0.98730 0.99847
0.98971 1.20794 1.41582 0.88907 1.03642 0.89996 1.24905 0.94561
0.95933 0.96959 1.69875 1.45124 1.00041 1.37779 0.87028 0.79644
0.78791 0.85565 1.20268 1.21096 1.17827 1.46182 1.52051 1.11462
1.08164 1.21881 0.97162 1.01431 0.79793 1.22498 0.98307 0.98173
0.93894 0.87516 1.21893 0.99810 0.99116 0.95215 1.23890 1.01269
1.00265 0.96103 1.88012 1.36409 1.77085 1.05313 1.24564 0.97623
0.97446 1.01252 0.91687 0.92917 0.91651 0.88678 0.90513 0.93685
0.87995 0.95078 0.92924 0.93753 0.93922 0.92390 0.88999 0.87988
0.90690 0.89310 0.88140 0.89155 0.89071 0.87687
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.22 9.89 37.16 0.37 -0.85 16
2 C -0.03 -0.31 6.07 -27.88 -0.17 -0.48 16
3 C 0.15 2.22 6.91 -154.02 -1.06 1.15 16
4 N -0.28 -5.40 12.18 32.99 0.40 -4.99 16
5 N -0.32 -6.95 9.59 30.31 0.29 -6.66 16
6 C 0.38 7.26 6.33 -318.87 -2.02 5.25 16
7 N -0.45 -9.13 4.66 -176.08 -0.82 -9.95 16
8 C 0.04 0.78 9.04 60.07 0.54 1.33 16
9 C 0.20 4.65 1.28 -68.87 -0.09 4.56 16
10 H 0.03 0.68 5.14 -51.93 -0.27 0.42 16
11 C -0.14 -3.18 8.84 37.16 0.33 -2.85 16
12 C -0.51 -13.58 7.54 -34.44 -0.26 -13.84 16
13 H 0.08 2.35 8.01 -52.48 -0.42 1.93 16
14 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16
15 N -0.89 -26.04 13.96 55.43 0.77 -25.27 16
16 Si 0.86 21.40 26.98 -169.99 -4.59 16.81 16
17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
18 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16
19 H -0.25 -6.32 6.60 56.52 0.37 -5.95 16
20 N -0.48 -6.94 2.62 -114.08 -0.30 -7.24 16
21 C 0.12 1.23 4.99 -4.04 -0.02 1.21 16
22 C -0.11 -1.08 2.77 -89.51 -0.25 -1.33 16
23 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16
24 C -0.12 -0.91 5.86 -26.39 -0.15 -1.07 16
25 C -0.07 -0.53 7.38 37.53 0.28 -0.25 16
26 S -0.30 -3.29 23.24 -107.50 -2.50 -5.79 16
27 C -0.06 -0.61 5.70 38.29 0.22 -0.40 16
28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16
29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16
30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
31 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16
32 H 0.08 0.56 4.92 -51.93 -0.26 0.30 16
33 H 0.04 0.64 5.73 -51.93 -0.30 0.34 16
34 H 0.10 1.95 7.09 -51.93 -0.37 1.58 16
35 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16
36 H 0.05 1.24 7.99 -51.93 -0.42 0.82 16
37 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16
38 H 0.04 0.98 6.13 -51.93 -0.32 0.66 16
39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16
40 H 0.09 0.66 7.43 -51.93 -0.39 0.28 16
41 H 0.10 1.02 5.84 -51.93 -0.30 0.72 16
42 H 0.07 0.42 7.80 -51.93 -0.40 0.01 16
43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
44 H 0.10 0.76 8.14 -51.92 -0.42 0.33 16
45 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16
46 H 0.09 0.73 6.08 -51.93 -0.32 0.41 16
47 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16
LS Contribution 372.16 15.07 5.61 5.61
Total: -1.00 -32.28 372.16 -11.08 -43.36
By element:
Atomic # 1 Polarization: 7.12 SS G_CDS: -7.57 Total: -0.45 kcal
Atomic # 6 Polarization: -3.06 SS G_CDS: -2.38 Total: -5.44 kcal
Atomic # 7 Polarization: -54.45 SS G_CDS: 0.35 Total: -54.10 kcal
Atomic # 14 Polarization: 21.40 SS G_CDS: -4.59 Total: 16.81 kcal
Atomic # 16 Polarization: -3.29 SS G_CDS: -2.50 Total: -5.79 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -32.28 -11.08 -43.36 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001460443397.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 128.519 kcal
(2) G-P(sol) polarization free energy of solvation -32.276 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.243 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.080 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal
(6) G-S(sol) free energy of system = (1) + (5) 85.163 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds