Wall clock time and date at job start Tue Mar 31 2020 15:12:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50699 * 109.46959 * 2 1
4 4 N 1.30302 * 126.34854 * 276.47523 * 3 2 1
5 5 N 1.28522 * 110.05296 * 180.31223 * 4 3 2
6 6 C 1.31212 * 109.86395 * 359.71430 * 5 4 3
7 7 N 1.38580 * 126.47676 * 179.97438 * 6 5 4
8 8 C 1.46907 * 110.99883 * 110.56243 * 7 6 5
9 9 C 1.46902 * 111.00103 * 346.60817 * 7 6 5
10 10 H 1.09001 * 109.46820 * 59.99786 * 9 7 6
11 11 C 1.52998 * 109.46954 * 300.00166 * 9 7 6
12 12 C 1.50695 * 109.47289 * 179.97438 * 9 7 6
13 13 H 1.08008 * 119.99917 * 33.80066 * 12 9 7
14 14 C 1.37873 * 120.00327 * 213.79034 * 12 9 7
15 15 N 1.31517 * 120.00222 * 182.61373 * 14 12 9
16 16 Si 1.86796 * 119.99945 * 2.61908 * 14 12 9
17 17 H 1.48499 * 109.47503 * 92.20478 * 16 14 12
18 18 H 1.48495 * 109.47296 * 212.21054 * 16 14 12
19 19 H 1.48504 * 109.46885 * 332.21141 * 16 14 12
20 20 N 1.36460 * 107.05145 * 0.02562 * 6 5 4
21 21 C 1.46500 * 127.13399 * 180.02562 * 20 6 5
22 22 C 1.53008 * 109.46948 * 275.69942 * 21 20 6
23 23 H 1.09000 * 109.59911 * 54.85620 * 22 21 20
24 24 C 1.52937 * 109.59893 * 175.18295 * 22 21 20
25 25 C 1.53712 * 112.48724 * 149.84951 * 24 22 21
26 26 S 1.83397 * 105.05936 * 357.12230 * 25 24 22
27 27 C 1.55149 * 109.45207 * 294.62793 * 22 21 20
28 28 H 1.09006 * 109.47233 * 179.97438 * 1 2 3
29 29 H 1.08994 * 109.47428 * 300.00037 * 1 2 3
30 30 H 1.09003 * 109.47498 * 60.00135 * 1 2 3
31 31 H 1.09003 * 109.47261 * 240.00209 * 2 1 3
32 32 H 1.08997 * 109.47267 * 119.99497 * 2 1 3
33 33 H 1.08991 * 109.46957 * 52.40363 * 8 7 6
34 34 H 1.09000 * 109.46894 * 172.40202 * 8 7 6
35 35 H 1.09001 * 109.46765 * 292.40227 * 8 7 6
36 36 H 1.09000 * 109.46913 * 186.67287 * 11 9 7
37 37 H 1.09001 * 109.47042 * 306.66640 * 11 9 7
38 38 H 1.08993 * 109.47626 * 66.66831 * 11 9 7
39 39 H 0.96999 * 119.99737 * 180.02562 * 15 14 12
40 40 H 1.09001 * 109.47003 * 155.70063 * 21 20 6
41 41 H 1.08997 * 109.47882 * 35.70059 * 21 20 6
42 42 H 1.08993 * 108.89291 * 29.05911 * 24 22 21
43 43 H 1.09003 * 108.77802 * 270.56273 * 24 22 21
44 44 H 1.09008 * 110.34209 * 116.04533 * 25 24 22
45 45 H 1.08996 * 110.34020 * 238.19401 * 25 24 22
46 46 H 1.08996 * 111.13488 * 316.63292 * 27 22 21
47 47 H 1.09005 * 111.12966 * 80.76787 * 27 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.1781 2.1884 -1.0428
5 7 2.6338 3.3357 -0.6852
6 6 2.7988 3.3640 0.6162
7 7 3.2723 4.4306 1.3636
8 6 2.2053 5.0075 2.1924
9 6 3.8775 5.4521 0.4986
10 1 3.1308 5.8219 -0.2042
11 6 5.0460 4.8381 -0.2751
12 6 4.3792 6.5938 1.3446
13 1 4.7725 6.4019 2.3321
14 6 4.3364 7.8831 0.8582
15 7 4.8212 8.8731 1.5755
16 14 3.5895 8.2240 -0.8197
17 1 2.1491 8.5496 -0.6635
18 1 4.2908 9.3711 -1.4499
19 1 3.7347 7.0220 -1.6795
20 7 2.4171 2.1443 1.0945
21 6 2.4231 1.7006 2.4907
22 6 3.8184 1.1913 2.8580
23 1 4.5575 1.9631 2.6433
24 6 3.8609 0.8397 4.3458
25 6 4.8506 -0.2955 4.6535
26 16 5.5108 -0.8077 3.0209
27 6 4.1387 -0.0809 2.0298
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3634 0.5138 0.8899
30 1 -0.3634 0.5138 -0.8900
31 1 1.8934 -0.5138 -0.8900
32 1 1.8933 -0.5137 0.8900
33 1 1.7312 4.2181 2.7755
34 1 2.6306 5.7513 2.8661
35 1 1.4625 5.4811 1.5504
36 1 5.5683 5.6205 -0.8256
37 1 5.7350 4.3636 0.4237
38 1 4.6671 4.0928 -0.9743
39 1 4.7907 9.7802 1.2334
40 1 1.6975 0.8974 2.6197
41 1 2.1591 2.5362 3.1388
42 1 2.8643 0.5350 4.6651
43 1 4.1552 1.7262 4.9076
44 1 5.6567 0.0671 5.2914
45 1 4.3351 -1.1282 5.1320
46 1 3.2816 -0.7535 1.9953
47 1 4.4725 0.1780 1.0250
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001460443397.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:12:32
Heat of formation + Delta-G solvation = 67.199786 kcal
Electronic energy + Delta-G solvation = -27072.301304 eV
Core-core repulsion = 23610.147767 eV
Total energy + Delta-G solvation = -3462.153538 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 324.168 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-43.99487 -38.99239 -38.54944 -35.35657 -35.05575 -34.19002 -32.02664 -30.86692
-30.17572 -28.43328 -27.39941 -26.27075 -25.04380 -24.86378 -23.35754 -21.68550
-21.12772 -20.84596 -19.22099 -18.07147 -17.92836 -17.26997 -16.95143 -16.55706
-16.41088 -15.80933 -15.70208 -15.07535 -15.07000 -14.78887 -14.67607 -14.57830
-14.34947 -14.06231 -13.46317 -13.37652 -13.18880 -13.06383 -12.96057 -12.90822
-12.78254 -12.63706 -12.48834 -12.38982 -12.20127 -12.09708 -12.07225 -11.86992
-11.66237 -11.52799 -11.25367 -11.15227 -10.81359 -10.72539 -10.40692 -9.12035
-8.76930 -8.35462 -6.38990 0.76900 0.90189 1.24213 1.29294 1.32752
1.39959 1.45973 1.89740 2.28243 2.83089 3.07154 3.30652 3.38058
3.50892 3.76951 3.87082 3.95415 3.97406 4.06878 4.14075 4.26979
4.27897 4.35400 4.42534 4.48125 4.51341 4.55348 4.61274 4.69493
4.71477 4.78658 4.82777 4.87546 5.00556 5.02578 5.03380 5.10029
5.11767 5.15558 5.21418 5.33306 5.37021 5.49783 5.77463 5.84803
6.20563 6.55836 6.68461 7.27318 7.86935 8.79628
Molecular weight = 324.17amu
Principal moments of inertia in cm(-1)
A = 0.013218 B = 0.004482 C = 0.003754
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2117.821645 B = 6246.074334 C = 7457.565017
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.032 4.032
3 C 0.183 3.817
4 N -0.333 5.333
5 N -0.370 5.370
6 C 0.365 3.635
7 N -0.453 5.453
8 C 0.046 3.954
9 C 0.205 3.795
10 H 0.009 0.991
11 C -0.127 4.127
12 C -0.500 4.500
13 H 0.054 0.946
14 C 0.037 3.963
15 N -0.931 5.931
16 Si 0.915 3.085
17 H -0.270 1.270
18 H -0.279 1.279
19 H -0.259 1.259
20 N -0.471 5.471
21 C 0.114 3.886
22 C -0.101 4.101
23 H 0.063 0.937
24 C -0.116 4.116
25 C -0.051 4.051
26 S -0.361 6.361
27 C -0.046 4.046
28 H 0.095 0.905
29 H 0.057 0.943
30 H 0.042 0.958
31 H 0.101 0.899
32 H 0.109 0.891
33 H 0.089 0.911
34 H 0.084 0.916
35 H 0.017 0.983
36 H 0.043 0.957
37 H 0.043 0.957
38 H 0.043 0.957
39 H 0.269 0.731
40 H 0.138 0.862
41 H 0.107 0.893
42 H 0.111 0.889
43 H 0.087 0.913
44 H 0.101 0.899
45 H 0.116 0.884
46 H 0.122 0.878
47 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.658 -23.083 7.620 26.156
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.072 4.072
3 C -0.086 4.086
4 N -0.171 5.171
5 N -0.213 5.213
6 C 0.007 3.993
7 N -0.177 5.177
8 C -0.100 4.100
9 C 0.099 3.901
10 H 0.027 0.973
11 C -0.185 4.185
12 C -0.539 4.539
13 H 0.072 0.928
14 C -0.163 4.163
15 N -0.570 5.570
16 Si 0.741 3.259
17 H -0.196 1.196
18 H -0.205 1.205
19 H -0.183 1.183
20 N -0.166 5.166
21 C -0.008 4.008
22 C -0.123 4.123
23 H 0.082 0.918
24 C -0.155 4.155
25 C -0.199 4.199
26 S -0.135 6.135
27 C -0.194 4.194
28 H 0.114 0.886
29 H 0.076 0.924
30 H 0.062 0.938
31 H 0.120 0.880
32 H 0.127 0.873
33 H 0.107 0.893
34 H 0.103 0.897
35 H 0.035 0.965
36 H 0.062 0.938
37 H 0.062 0.938
38 H 0.062 0.938
39 H 0.078 0.922
40 H 0.156 0.844
41 H 0.126 0.874
42 H 0.129 0.871
43 H 0.105 0.895
44 H 0.119 0.881
45 H 0.134 0.866
46 H 0.140 0.860
47 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -8.238 -23.192 6.216 25.385
hybrid contribution -1.029 1.647 0.090 1.945
sum -9.267 -21.545 6.307 24.287
Atomic orbital electron populations
1.21730 0.92467 1.03854 1.01948 1.20317 0.97447 0.83621 1.05790
1.25477 1.02396 0.98815 0.81871 1.73842 1.17963 0.99038 1.26236
1.74607 1.21558 1.15345 1.09828 1.22941 0.98190 0.88425 0.89715
1.59048 1.28284 1.07898 1.22492 1.22310 0.91129 0.99996 0.96602
1.19478 0.92330 0.88120 0.90207 0.97318 1.21847 0.98440 0.99421
0.98785 1.20840 1.40597 0.89891 1.02561 0.92816 1.25480 0.95142
0.95933 0.99727 1.69968 1.46987 1.00544 1.39484 0.86200 0.79254
0.78401 0.82093 1.19582 1.20464 1.18330 1.46333 1.50647 1.09713
1.09929 1.22330 0.98213 1.03083 0.77222 1.22386 0.97065 0.96942
0.95872 0.91844 1.21873 1.01675 0.99018 0.92945 1.24006 1.01335
1.01091 0.93424 1.88286 1.38746 1.77469 1.08997 1.24510 0.97734
0.97702 0.99452 0.88580 0.92352 0.93844 0.88039 0.87304 0.89310
0.89713 0.96472 0.93842 0.93809 0.93818 0.92169 0.84390 0.87447
0.87107 0.89469 0.88087 0.86580 0.85983 0.90425
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.76 9.89 71.98 0.71 -1.05 16
2 C -0.03 -0.48 6.07 29.85 0.18 -0.30 16
3 C 0.18 4.90 6.91 137.64 0.95 5.85 16
4 N -0.33 -12.49 12.18 -49.54 -0.60 -13.10 16
5 N -0.37 -16.00 9.59 -58.00 -0.56 -16.55 16
6 C 0.36 13.75 6.33 260.11 1.65 15.39 16
7 N -0.45 -18.43 4.66 -710.99 -3.31 -21.74 16
8 C 0.05 1.65 9.04 127.69 1.15 2.81 16
9 C 0.20 9.99 1.28 44.17 0.06 10.05 16
10 H 0.01 0.47 5.14 -2.39 -0.01 0.46 16
11 C -0.13 -6.05 8.84 71.98 0.64 -5.41 16
12 C -0.50 -27.44 7.54 25.60 0.19 -27.25 16
13 H 0.05 3.21 8.01 -2.91 -0.02 3.19 16
14 C 0.04 2.10 5.47 84.65 0.46 2.57 16
15 N -0.93 -55.72 13.96 21.45 0.30 -55.42 16
16 Si 0.92 45.12 26.98 68.60 1.85 46.97 16
17 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16
18 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16
19 H -0.26 -12.88 6.60 99.48 0.66 -12.23 16
20 N -0.47 -12.55 2.62 -514.84 -1.35 -13.90 16
21 C 0.11 1.85 4.99 86.38 0.43 2.28 16
22 C -0.10 -1.78 2.77 -10.08 -0.03 -1.81 16
23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16
24 C -0.12 -1.30 5.86 30.81 0.18 -1.12 16
25 C -0.05 -0.64 7.38 72.22 0.53 -0.10 16
26 S -0.36 -7.54 23.24 -56.49 -1.31 -8.86 16
27 C -0.05 -0.82 5.70 72.72 0.41 -0.40 16
28 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16
29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16
31 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16
32 H 0.11 0.94 4.92 -2.39 -0.01 0.93 16
33 H 0.09 2.31 5.73 -2.39 -0.01 2.30 16
34 H 0.08 3.30 7.09 -2.39 -0.02 3.28 16
35 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16
36 H 0.04 2.09 7.99 -2.39 -0.02 2.07 16
37 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16
38 H 0.04 2.07 6.13 -2.39 -0.01 2.05 16
39 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16
40 H 0.14 1.05 7.43 -2.39 -0.02 1.03 16
41 H 0.11 1.70 5.84 -2.39 -0.01 1.68 16
42 H 0.11 0.53 7.80 -2.39 -0.02 0.51 16
43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16
44 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16
45 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16
46 H 0.12 1.35 6.08 -2.39 -0.01 1.33 16
47 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16
Total: -1.00 -75.62 372.16 3.45 -72.17
By element:
Atomic # 1 Polarization: 8.01 SS G_CDS: 0.91 Total: 8.92 kcal
Atomic # 6 Polarization: -6.02 SS G_CDS: 7.52 Total: 1.50 kcal
Atomic # 7 Polarization: -115.19 SS G_CDS: -5.52 Total: -120.71 kcal
Atomic # 14 Polarization: 45.12 SS G_CDS: 1.85 Total: 46.97 kcal
Atomic # 16 Polarization: -7.54 SS G_CDS: -1.31 Total: -8.86 kcal
Total: -75.62 3.45 -72.17 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001460443397.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 139.372 kcal
(2) G-P(sol) polarization free energy of solvation -75.622 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.750 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.172 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.200 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds