Wall clock time and date at job start Tue Mar 31 2020 15:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.46959 * 2 1 4 4 N 1.30302 * 126.34854 * 276.47523 * 3 2 1 5 5 N 1.28522 * 110.05296 * 180.31223 * 4 3 2 6 6 C 1.31212 * 109.86395 * 359.71430 * 5 4 3 7 7 N 1.38580 * 126.47676 * 179.97438 * 6 5 4 8 8 C 1.46907 * 110.99883 * 110.56243 * 7 6 5 9 9 C 1.46902 * 111.00103 * 346.60817 * 7 6 5 10 10 H 1.09001 * 109.46820 * 59.99786 * 9 7 6 11 11 C 1.52998 * 109.46954 * 300.00166 * 9 7 6 12 12 C 1.50695 * 109.47289 * 179.97438 * 9 7 6 13 13 H 1.08008 * 119.99917 * 33.80066 * 12 9 7 14 14 C 1.37873 * 120.00327 * 213.79034 * 12 9 7 15 15 N 1.31517 * 120.00222 * 182.61373 * 14 12 9 16 16 Si 1.86796 * 119.99945 * 2.61908 * 14 12 9 17 17 H 1.48499 * 109.47503 * 92.20478 * 16 14 12 18 18 H 1.48495 * 109.47296 * 212.21054 * 16 14 12 19 19 H 1.48504 * 109.46885 * 332.21141 * 16 14 12 20 20 N 1.36460 * 107.05145 * 0.02562 * 6 5 4 21 21 C 1.46500 * 127.13399 * 180.02562 * 20 6 5 22 22 C 1.53008 * 109.46948 * 275.69942 * 21 20 6 23 23 H 1.09000 * 109.59911 * 54.85620 * 22 21 20 24 24 C 1.52937 * 109.59893 * 175.18295 * 22 21 20 25 25 C 1.53712 * 112.48724 * 149.84951 * 24 22 21 26 26 S 1.83397 * 105.05936 * 357.12230 * 25 24 22 27 27 C 1.55149 * 109.45207 * 294.62793 * 22 21 20 28 28 H 1.09006 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47428 * 300.00037 * 1 2 3 30 30 H 1.09003 * 109.47498 * 60.00135 * 1 2 3 31 31 H 1.09003 * 109.47261 * 240.00209 * 2 1 3 32 32 H 1.08997 * 109.47267 * 119.99497 * 2 1 3 33 33 H 1.08991 * 109.46957 * 52.40363 * 8 7 6 34 34 H 1.09000 * 109.46894 * 172.40202 * 8 7 6 35 35 H 1.09001 * 109.46765 * 292.40227 * 8 7 6 36 36 H 1.09000 * 109.46913 * 186.67287 * 11 9 7 37 37 H 1.09001 * 109.47042 * 306.66640 * 11 9 7 38 38 H 1.08993 * 109.47626 * 66.66831 * 11 9 7 39 39 H 0.96999 * 119.99737 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.47003 * 155.70063 * 21 20 6 41 41 H 1.08997 * 109.47882 * 35.70059 * 21 20 6 42 42 H 1.08993 * 108.89291 * 29.05911 * 24 22 21 43 43 H 1.09003 * 108.77802 * 270.56273 * 24 22 21 44 44 H 1.09008 * 110.34209 * 116.04533 * 25 24 22 45 45 H 1.08996 * 110.34020 * 238.19401 * 25 24 22 46 46 H 1.08996 * 111.13488 * 316.63292 * 27 22 21 47 47 H 1.09005 * 111.12966 * 80.76787 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1781 2.1884 -1.0428 5 7 2.6338 3.3357 -0.6852 6 6 2.7988 3.3640 0.6162 7 7 3.2723 4.4306 1.3636 8 6 2.2053 5.0075 2.1924 9 6 3.8775 5.4521 0.4986 10 1 3.1308 5.8219 -0.2042 11 6 5.0460 4.8381 -0.2751 12 6 4.3792 6.5938 1.3446 13 1 4.7725 6.4019 2.3321 14 6 4.3364 7.8831 0.8582 15 7 4.8212 8.8731 1.5755 16 14 3.5895 8.2240 -0.8197 17 1 2.1491 8.5496 -0.6635 18 1 4.2908 9.3711 -1.4499 19 1 3.7347 7.0220 -1.6795 20 7 2.4171 2.1443 1.0945 21 6 2.4231 1.7006 2.4907 22 6 3.8184 1.1913 2.8580 23 1 4.5575 1.9631 2.6433 24 6 3.8609 0.8397 4.3458 25 6 4.8506 -0.2955 4.6535 26 16 5.5108 -0.8077 3.0209 27 6 4.1387 -0.0809 2.0298 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.7312 4.2181 2.7755 34 1 2.6306 5.7513 2.8661 35 1 1.4625 5.4811 1.5504 36 1 5.5683 5.6205 -0.8256 37 1 5.7350 4.3636 0.4237 38 1 4.6671 4.0928 -0.9743 39 1 4.7907 9.7802 1.2334 40 1 1.6975 0.8974 2.6197 41 1 2.1591 2.5362 3.1388 42 1 2.8643 0.5350 4.6651 43 1 4.1552 1.7262 4.9076 44 1 5.6567 0.0671 5.2914 45 1 4.3351 -1.1282 5.1320 46 1 3.2816 -0.7535 1.9953 47 1 4.4725 0.1780 1.0250 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460443397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:32 Heat of formation + Delta-G solvation = 67.199786 kcal Electronic energy + Delta-G solvation = -27072.301304 eV Core-core repulsion = 23610.147767 eV Total energy + Delta-G solvation = -3462.153538 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.99487 -38.99239 -38.54944 -35.35657 -35.05575 -34.19002 -32.02664 -30.86692 -30.17572 -28.43328 -27.39941 -26.27075 -25.04380 -24.86378 -23.35754 -21.68550 -21.12772 -20.84596 -19.22099 -18.07147 -17.92836 -17.26997 -16.95143 -16.55706 -16.41088 -15.80933 -15.70208 -15.07535 -15.07000 -14.78887 -14.67607 -14.57830 -14.34947 -14.06231 -13.46317 -13.37652 -13.18880 -13.06383 -12.96057 -12.90822 -12.78254 -12.63706 -12.48834 -12.38982 -12.20127 -12.09708 -12.07225 -11.86992 -11.66237 -11.52799 -11.25367 -11.15227 -10.81359 -10.72539 -10.40692 -9.12035 -8.76930 -8.35462 -6.38990 0.76900 0.90189 1.24213 1.29294 1.32752 1.39959 1.45973 1.89740 2.28243 2.83089 3.07154 3.30652 3.38058 3.50892 3.76951 3.87082 3.95415 3.97406 4.06878 4.14075 4.26979 4.27897 4.35400 4.42534 4.48125 4.51341 4.55348 4.61274 4.69493 4.71477 4.78658 4.82777 4.87546 5.00556 5.02578 5.03380 5.10029 5.11767 5.15558 5.21418 5.33306 5.37021 5.49783 5.77463 5.84803 6.20563 6.55836 6.68461 7.27318 7.86935 8.79628 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.013218 B = 0.004482 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.821645 B = 6246.074334 C = 7457.565017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.032 4.032 3 C 0.183 3.817 4 N -0.333 5.333 5 N -0.370 5.370 6 C 0.365 3.635 7 N -0.453 5.453 8 C 0.046 3.954 9 C 0.205 3.795 10 H 0.009 0.991 11 C -0.127 4.127 12 C -0.500 4.500 13 H 0.054 0.946 14 C 0.037 3.963 15 N -0.931 5.931 16 Si 0.915 3.085 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.259 1.259 20 N -0.471 5.471 21 C 0.114 3.886 22 C -0.101 4.101 23 H 0.063 0.937 24 C -0.116 4.116 25 C -0.051 4.051 26 S -0.361 6.361 27 C -0.046 4.046 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.017 0.983 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.269 0.731 40 H 0.138 0.862 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.116 0.884 46 H 0.122 0.878 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.658 -23.083 7.620 26.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 C -0.086 4.086 4 N -0.171 5.171 5 N -0.213 5.213 6 C 0.007 3.993 7 N -0.177 5.177 8 C -0.100 4.100 9 C 0.099 3.901 10 H 0.027 0.973 11 C -0.185 4.185 12 C -0.539 4.539 13 H 0.072 0.928 14 C -0.163 4.163 15 N -0.570 5.570 16 Si 0.741 3.259 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.183 1.183 20 N -0.166 5.166 21 C -0.008 4.008 22 C -0.123 4.123 23 H 0.082 0.918 24 C -0.155 4.155 25 C -0.199 4.199 26 S -0.135 6.135 27 C -0.194 4.194 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.035 0.965 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.156 0.844 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.105 0.895 44 H 0.119 0.881 45 H 0.134 0.866 46 H 0.140 0.860 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.238 -23.192 6.216 25.385 hybrid contribution -1.029 1.647 0.090 1.945 sum -9.267 -21.545 6.307 24.287 Atomic orbital electron populations 1.21730 0.92467 1.03854 1.01948 1.20317 0.97447 0.83621 1.05790 1.25477 1.02396 0.98815 0.81871 1.73842 1.17963 0.99038 1.26236 1.74607 1.21558 1.15345 1.09828 1.22941 0.98190 0.88425 0.89715 1.59048 1.28284 1.07898 1.22492 1.22310 0.91129 0.99996 0.96602 1.19478 0.92330 0.88120 0.90207 0.97318 1.21847 0.98440 0.99421 0.98785 1.20840 1.40597 0.89891 1.02561 0.92816 1.25480 0.95142 0.95933 0.99727 1.69968 1.46987 1.00544 1.39484 0.86200 0.79254 0.78401 0.82093 1.19582 1.20464 1.18330 1.46333 1.50647 1.09713 1.09929 1.22330 0.98213 1.03083 0.77222 1.22386 0.97065 0.96942 0.95872 0.91844 1.21873 1.01675 0.99018 0.92945 1.24006 1.01335 1.01091 0.93424 1.88286 1.38746 1.77469 1.08997 1.24510 0.97734 0.97702 0.99452 0.88580 0.92352 0.93844 0.88039 0.87304 0.89310 0.89713 0.96472 0.93842 0.93809 0.93818 0.92169 0.84390 0.87447 0.87107 0.89469 0.88087 0.86580 0.85983 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.89 71.98 0.71 -1.05 16 2 C -0.03 -0.48 6.07 29.85 0.18 -0.30 16 3 C 0.18 4.90 6.91 137.64 0.95 5.85 16 4 N -0.33 -12.49 12.18 -49.54 -0.60 -13.10 16 5 N -0.37 -16.00 9.59 -58.00 -0.56 -16.55 16 6 C 0.36 13.75 6.33 260.11 1.65 15.39 16 7 N -0.45 -18.43 4.66 -710.99 -3.31 -21.74 16 8 C 0.05 1.65 9.04 127.69 1.15 2.81 16 9 C 0.20 9.99 1.28 44.17 0.06 10.05 16 10 H 0.01 0.47 5.14 -2.39 -0.01 0.46 16 11 C -0.13 -6.05 8.84 71.98 0.64 -5.41 16 12 C -0.50 -27.44 7.54 25.60 0.19 -27.25 16 13 H 0.05 3.21 8.01 -2.91 -0.02 3.19 16 14 C 0.04 2.10 5.47 84.65 0.46 2.57 16 15 N -0.93 -55.72 13.96 21.45 0.30 -55.42 16 16 Si 0.92 45.12 26.98 68.60 1.85 46.97 16 17 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 18 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 19 H -0.26 -12.88 6.60 99.48 0.66 -12.23 16 20 N -0.47 -12.55 2.62 -514.84 -1.35 -13.90 16 21 C 0.11 1.85 4.99 86.38 0.43 2.28 16 22 C -0.10 -1.78 2.77 -10.08 -0.03 -1.81 16 23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 24 C -0.12 -1.30 5.86 30.81 0.18 -1.12 16 25 C -0.05 -0.64 7.38 72.22 0.53 -0.10 16 26 S -0.36 -7.54 23.24 -56.49 -1.31 -8.86 16 27 C -0.05 -0.82 5.70 72.72 0.41 -0.40 16 28 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 32 H 0.11 0.94 4.92 -2.39 -0.01 0.93 16 33 H 0.09 2.31 5.73 -2.39 -0.01 2.30 16 34 H 0.08 3.30 7.09 -2.39 -0.02 3.28 16 35 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.04 2.09 7.99 -2.39 -0.02 2.07 16 37 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.04 2.07 6.13 -2.39 -0.01 2.05 16 39 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 40 H 0.14 1.05 7.43 -2.39 -0.02 1.03 16 41 H 0.11 1.70 5.84 -2.39 -0.01 1.68 16 42 H 0.11 0.53 7.80 -2.39 -0.02 0.51 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 45 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.12 1.35 6.08 -2.39 -0.01 1.33 16 47 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -75.62 372.16 3.45 -72.17 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.91 Total: 8.92 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 7.52 Total: 1.50 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -5.52 Total: -120.71 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.85 Total: 46.97 kcal Atomic # 16 Polarization: -7.54 SS G_CDS: -1.31 Total: -8.86 kcal Total: -75.62 3.45 -72.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460443397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.372 kcal (2) G-P(sol) polarization free energy of solvation -75.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds