Wall clock time and date at job start Tue Mar 31 2020 13:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48500 * 109.47341 * 239.99664 * 3 2 1 5 5 H 1.48504 * 109.47235 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46651 * 119.99846 * 3 2 1 7 7 C 1.38816 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99557 * 163.07518 * 7 2 1 9 9 N 1.36935 * 120.00109 * 343.07479 * 7 2 1 10 10 C 1.46934 * 120.62776 * 151.82327 * 9 7 2 11 11 C 1.53194 * 108.89214 * 126.34278 * 10 9 7 12 12 C 1.53349 * 109.14918 * 54.57866 * 11 10 9 13 13 C 1.53042 * 109.60630 * 298.70887 * 12 11 10 14 14 H 1.09003 * 109.52928 * 301.40987 * 13 12 11 15 15 C 1.52995 * 109.49858 * 181.32362 * 13 12 11 16 16 N 1.46498 * 109.47394 * 175.16149 * 15 13 12 17 17 C 1.34774 * 120.00379 * 180.02562 * 16 15 13 18 18 O 1.21284 * 119.99847 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00504 * 180.02562 * 17 16 15 20 20 H 1.08996 * 110.01755 * 300.07063 * 19 17 16 21 21 C 1.53876 * 110.02688 * 61.45603 * 19 17 16 22 22 C 1.54267 * 106.59881 * 119.28855 * 21 19 17 23 23 C 1.54893 * 104.19462 * 23.60805 * 22 21 19 24 24 H 1.08995 * 110.75884 * 80.37333 * 23 22 21 25 25 C 1.50704 * 110.75526 * 203.56245 * 23 22 21 26 26 O 1.20823 * 120.00288 * 118.54661 * 25 23 22 27 27 O 1.34224 * 119.99809 * 298.54068 * 25 23 22 28 28 C 1.54259 * 110.03354 * 178.62143 * 19 17 16 29 29 C 1.46916 * 120.63432 * 331.84779 * 9 7 2 30 30 H 0.96997 * 119.99488 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.58460 * 246.20243 * 10 9 7 32 32 H 1.09001 * 109.58650 * 6.48248 * 10 9 7 33 33 H 1.08996 * 109.49250 * 174.65763 * 11 10 9 34 34 H 1.09002 * 109.49602 * 294.75299 * 11 10 9 35 35 H 1.09004 * 109.41806 * 178.67665 * 12 11 10 36 36 H 1.08999 * 109.43105 * 58.75276 * 12 11 10 37 37 H 1.08995 * 109.47860 * 295.16498 * 15 13 12 38 38 H 1.09009 * 109.46848 * 55.16693 * 15 13 12 39 39 H 0.97002 * 119.99922 * 0.02562 * 16 15 13 40 40 H 1.08999 * 110.03013 * 238.56899 * 21 19 17 41 41 H 1.08993 * 110.03722 * 359.95415 * 21 19 17 42 42 H 1.09002 * 110.48868 * 142.28278 * 22 21 19 43 43 H 1.08998 * 110.48347 * 264.79781 * 22 21 19 44 44 H 0.96697 * 117.00070 * 179.97438 * 27 25 23 45 45 H 1.08994 * 110.49173 * 335.78830 * 28 19 17 46 46 H 1.09007 * 110.48526 * 98.43039 * 28 19 17 47 47 H 1.09007 * 109.58615 * 353.36985 * 29 9 7 48 48 H 1.08997 * 109.58994 * 113.79909 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0551 -1.2224 -0.2728 9 7 1.3699 -2.3626 0.3442 10 6 1.8136 -3.6528 -0.2011 11 6 2.0696 -4.6199 0.9591 12 6 0.8116 -4.7023 1.8322 13 6 0.4972 -3.3211 2.4115 14 1 1.3466 -2.9698 2.9974 15 6 -0.7389 -3.4129 3.3084 16 7 -0.9715 -2.1182 3.9534 17 6 -2.0128 -1.9617 4.7945 18 8 -2.7571 -2.8929 5.0179 19 6 -2.2525 -0.6297 5.4575 20 1 -1.3888 -0.3532 6.0622 21 6 -2.5174 0.4489 4.3926 22 6 -3.9330 0.9984 4.6645 23 6 -4.1785 0.6909 6.1626 24 1 -3.6919 1.4340 6.7943 25 6 -5.6545 0.6249 6.4594 26 8 -6.1422 -0.3999 6.8739 27 8 -6.4274 1.7046 6.2632 28 6 -3.5163 -0.6982 6.3393 29 6 0.2259 -2.3410 1.2658 30 1 -0.4849 0.8401 -0.0004 31 1 1.0399 -4.0598 -0.8522 32 1 2.7330 -3.5126 -0.7696 33 1 2.3074 -5.6074 0.5637 34 1 2.9046 -4.2565 1.5581 35 1 0.9809 -5.4075 2.6461 36 1 -0.0286 -5.0419 1.2265 37 1 -1.6067 -3.6794 2.7052 38 1 -0.5786 -4.1751 4.0711 39 1 -0.3760 -1.3736 3.7750 40 1 -1.7828 1.2493 4.4811 41 1 -2.4718 0.0092 3.3963 42 1 -3.9660 2.0731 4.4853 43 1 -4.6670 0.4861 4.0425 44 1 -7.3683 1.6139 6.4673 45 1 -4.1834 -1.4860 5.9896 46 1 -3.2453 -0.8616 7.3824 47 1 0.0991 -1.3355 1.6674 48 1 -0.6772 -2.6410 0.7344 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574481054.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:27 Heat of formation + Delta-G solvation = -134.327081 kcal Electronic energy + Delta-G solvation = -28460.854432 eV Core-core repulsion = 24514.916411 eV Total energy + Delta-G solvation = -3945.938020 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.77003 -39.73795 -37.94860 -37.00008 -36.21520 -34.63737 -33.08858 -31.20937 -30.09614 -29.59381 -28.93717 -25.62831 -25.27743 -23.58027 -22.26142 -21.70040 -20.80147 -20.33524 -19.62039 -18.95611 -18.22448 -17.45846 -16.79613 -16.40594 -16.24988 -15.57766 -15.37574 -15.07501 -14.44501 -14.08132 -14.02839 -13.67464 -13.62939 -13.44682 -13.17725 -12.91956 -12.45757 -12.31808 -12.19254 -12.17823 -11.81154 -11.71015 -11.38090 -11.36006 -11.25017 -11.04663 -10.98799 -10.83728 -10.75283 -10.56140 -10.52708 -10.28452 -10.20298 -9.95797 -9.72254 -9.48845 -9.42119 -8.71364 -8.53007 -6.71644 -5.84946 -3.27443 2.02401 2.80241 2.87001 3.32091 3.38217 3.39733 3.49388 4.21122 4.31060 4.43276 4.68877 5.00560 5.08063 5.14835 5.17904 5.25328 5.28320 5.30307 5.38839 5.49175 5.54727 5.56734 5.57207 5.73321 5.78962 5.89290 5.95926 6.05810 6.10214 6.11822 6.22243 6.27292 6.28130 6.32416 6.39763 6.47656 6.63354 6.73802 6.81303 6.83501 6.98530 7.27090 7.56021 7.70512 7.73233 7.81562 8.38598 8.48548 9.15398 9.78457 10.36390 11.23020 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.012873 B = 0.003441 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.631030 B = 8135.909244 C = 9874.513346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.900 3.100 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.143 3.857 11 C -0.133 4.133 12 C -0.100 4.100 13 C -0.128 4.128 14 H 0.069 0.931 15 C 0.130 3.870 16 N -0.718 5.718 17 C 0.517 3.483 18 O -0.547 6.547 19 C -0.114 4.114 20 H 0.102 0.898 21 C -0.119 4.119 22 C -0.108 4.108 23 C -0.089 4.089 24 H 0.116 0.884 25 C 0.486 3.514 26 O -0.511 6.511 27 O -0.517 6.517 28 C -0.093 4.093 29 C 0.180 3.820 30 H 0.254 0.746 31 H 0.017 0.983 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.405 0.595 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.408 0.592 45 H 0.100 0.900 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.597 1.627 11.662 13.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.729 3.271 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.016 3.984 11 C -0.172 4.172 12 C -0.139 4.139 13 C -0.148 4.148 14 H 0.087 0.913 15 C 0.006 3.994 16 N -0.369 5.369 17 C 0.303 3.697 18 O -0.425 6.425 19 C -0.136 4.136 20 H 0.120 0.880 21 C -0.157 4.157 22 C -0.145 4.145 23 C -0.109 4.109 24 H 0.134 0.866 25 C 0.328 3.672 26 O -0.399 6.399 27 O -0.328 6.328 28 C -0.131 4.131 29 C 0.054 3.946 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.241 0.759 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.266 0.734 45 H 0.119 0.881 46 H 0.095 0.905 47 H 0.106 0.894 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -5.933 0.855 11.792 13.228 hybrid contribution 0.119 1.180 0.016 1.186 sum -5.814 2.035 11.807 13.318 Atomic orbital electron populations 1.70037 1.05107 1.25523 1.53933 1.25021 0.95273 0.98243 1.00955 0.86416 0.78981 0.83449 0.78218 1.20910 1.21595 1.21051 1.19159 0.92569 0.84792 1.41695 0.91797 1.44028 1.35927 1.01643 1.49873 1.20932 0.97521 0.86963 0.92938 1.22042 0.97346 0.98944 0.98880 1.21386 0.98281 0.95774 0.98424 1.22140 0.95947 0.98279 0.98465 0.91270 1.21382 0.98602 0.84239 0.95150 1.46041 1.29943 1.15040 1.45858 1.20420 0.80438 0.89814 0.79077 1.90674 1.46419 1.42385 1.63064 1.21939 1.00231 0.93648 0.97745 0.87958 1.22191 0.96748 0.97462 0.99321 1.22314 0.97643 1.02186 0.92385 1.22064 0.87389 1.01190 1.00210 0.86626 1.23396 0.90223 0.80324 0.73240 1.90741 1.75391 1.31782 1.41950 1.84552 1.25816 1.41522 1.80947 1.22242 0.95591 0.95253 1.00020 1.20791 0.88751 0.97556 0.87484 0.93603 0.96518 0.92950 0.93042 0.92449 0.93448 0.92499 0.91811 0.92433 0.75921 0.90033 0.89684 0.89873 0.90828 0.73359 0.88118 0.90495 0.89443 0.96401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.40 11.20 55.49 0.62 -23.78 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 20.45 29.59 -169.99 -5.03 15.42 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.25 -6.60 9.58 -15.06 -0.14 -6.74 16 8 H 0.06 1.66 7.89 -52.48 -0.41 1.24 16 9 N -0.59 -14.12 2.99 -172.31 -0.52 -14.64 16 10 C 0.14 2.91 6.50 -3.71 -0.02 2.88 16 11 C -0.13 -2.22 6.11 -26.45 -0.16 -2.38 16 12 C -0.10 -1.62 5.17 -26.53 -0.14 -1.76 16 13 C -0.13 -2.23 2.38 -90.50 -0.22 -2.44 16 14 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 15 C 0.13 2.11 5.07 -4.04 -0.02 2.09 16 16 N -0.72 -10.92 5.17 -60.30 -0.31 -11.23 16 17 C 0.52 7.93 6.93 -10.99 -0.08 7.85 16 18 O -0.55 -10.34 15.42 5.55 0.09 -10.25 16 19 C -0.11 -1.32 3.30 -90.66 -0.30 -1.62 16 20 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 21 C -0.12 -1.32 6.36 -25.61 -0.16 -1.48 16 22 C -0.11 -1.08 6.25 -25.07 -0.16 -1.24 16 23 C -0.09 -0.87 3.39 -89.77 -0.30 -1.18 16 24 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 25 C 0.49 5.34 7.63 36.01 0.27 5.62 16 26 O -0.51 -7.39 16.56 -18.75 -0.31 -7.70 16 27 O -0.52 -4.29 13.41 -39.24 -0.53 -4.82 16 28 C -0.09 -1.10 5.18 -25.07 -0.13 -1.23 16 29 C 0.18 3.95 4.39 -3.71 -0.02 3.93 16 30 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 39 H 0.41 5.90 7.66 -40.82 -0.31 5.59 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.14 7.59 -51.93 -0.39 0.74 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.82 8.05 -51.93 -0.42 0.41 16 44 H 0.41 1.73 9.10 45.56 0.41 2.15 16 45 H 0.10 1.53 6.30 -51.93 -0.33 1.20 16 46 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.09 2.06 5.26 -51.92 -0.27 1.79 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 380.90 15.07 5.74 5.74 Total: -1.00 -32.48 380.90 -9.10 -41.57 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.19 Total: 7.37 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -1.66 Total: 2.32 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.21 Total: -49.65 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.75 Total: -22.77 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.48 -9.10 -41.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574481054.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.756 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds