Wall clock time and date at job start Tue Mar 31 2020 15:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47665 * 2 1 4 4 C 1.50700 * 109.47418 * 180.02562 * 3 2 1 5 5 N 1.30257 * 125.62054 * 89.97835 * 4 3 2 6 6 C 1.34469 * 108.69953 * 179.77631 * 5 4 3 7 7 C 1.50699 * 126.16697 * 180.26629 * 6 5 4 8 8 C 1.34332 * 107.67170 * 0.39033 * 6 5 4 9 9 C 1.50696 * 126.44435 * 179.87193 * 8 6 5 10 10 O 1.45207 * 109.47022 * 89.71899 * 9 8 6 11 11 C 1.34224 * 117.00170 * 180.02562 * 10 9 8 12 12 O 1.20826 * 120.00052 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99894 * 180.02562 * 11 10 9 14 14 H 1.09001 * 109.46817 * 319.98604 * 13 11 10 15 15 N 1.46910 * 109.46728 * 199.99550 * 13 11 10 16 16 C 1.52992 * 109.47798 * 79.99371 * 13 11 10 17 17 C 1.52997 * 109.47482 * 185.00026 * 16 13 11 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 13 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99611 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46725 * 60.00093 * 23 21 19 25 25 H 1.48505 * 109.46988 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47116 * 300.00069 * 23 21 19 27 27 O 1.33970 * 125.61570 * 269.99813 * 4 3 2 28 28 H 1.09002 * 109.47004 * 59.99330 * 1 2 3 29 29 H 1.08995 * 109.47613 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46743 * 300.00298 * 1 2 3 31 31 H 1.09011 * 109.47080 * 240.00314 * 2 1 3 32 32 H 1.09004 * 109.47511 * 120.00566 * 2 1 3 33 33 H 1.09004 * 109.47283 * 60.00033 * 3 2 1 34 34 H 1.09004 * 109.47118 * 300.00807 * 3 2 1 35 35 H 1.08997 * 109.47252 * 270.14827 * 7 6 5 36 36 H 1.09002 * 109.46959 * 30.14737 * 7 6 5 37 37 H 1.08997 * 109.47376 * 150.14620 * 7 6 5 38 38 H 1.08995 * 109.47305 * 329.71766 * 9 8 6 39 39 H 1.09004 * 109.47157 * 209.71520 * 9 8 6 40 40 H 1.00894 * 110.99558 * 176.04306 * 15 13 11 41 41 H 1.00892 * 110.99957 * 299.99600 * 15 13 11 42 42 H 1.09002 * 109.47103 * 64.99779 * 16 13 11 43 43 H 1.08998 * 109.46862 * 305.00591 * 16 13 11 44 44 H 1.09002 * 109.47153 * 59.99783 * 17 16 13 45 45 H 1.09001 * 109.46832 * 299.99974 * 17 16 13 46 46 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 47 47 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 48 48 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 7 4.3053 1.4421 -1.0598 6 6 5.5919 1.4471 -0.6690 7 6 6.7964 1.4543 -1.5746 8 6 5.6101 1.4418 0.6742 9 6 6.8344 1.4418 1.5529 10 8 7.2275 2.8108 1.8351 11 6 8.3089 2.9868 2.6106 12 8 8.9069 2.0286 3.0398 13 6 8.7764 4.3794 2.9469 14 1 8.6829 5.0163 2.0672 15 7 10.1820 4.3347 3.3718 16 6 7.9188 4.9458 4.0801 17 6 8.3103 6.4023 4.3372 18 6 7.4530 6.9683 5.4710 19 6 7.8383 8.4032 5.7237 20 1 8.6170 8.8650 5.1349 21 6 7.1966 9.1264 6.7067 22 7 6.2479 8.5643 7.4234 23 14 7.6746 10.9048 7.0205 24 1 7.4540 11.7016 5.7869 25 1 6.8416 11.4546 8.1200 26 1 9.1078 10.9719 7.4035 27 8 4.3277 1.4422 1.0881 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 7.0899 0.4284 -1.7970 36 1 6.5505 1.9711 -2.5022 37 1 7.6201 1.9685 -1.0796 38 1 7.6485 0.9280 1.0418 39 1 6.6106 0.9280 2.4879 40 1 10.5382 5.2634 3.5411 41 1 10.2951 3.7501 4.1863 42 1 8.0807 4.3608 4.9855 43 1 6.8668 4.8964 3.7991 44 1 8.1484 6.9873 3.4318 45 1 9.3623 6.4515 4.6183 46 1 6.4009 6.9191 5.1903 47 1 7.6153 6.3833 6.3761 48 1 5.7962 9.0731 8.1147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577612003.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:07 Heat of formation + Delta-G solvation = -98.513577 kcal Electronic energy + Delta-G solvation = -26738.506429 eV Core-core repulsion = 22794.121399 eV Total energy + Delta-G solvation = -3944.385030 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.68601 -40.64151 -37.22058 -36.05394 -35.79152 -35.44642 -33.44042 -32.53831 -31.33013 -29.39201 -28.76888 -27.99010 -25.89980 -24.67392 -22.84913 -22.52787 -21.75227 -20.85529 -20.62510 -20.23685 -18.07277 -17.39289 -16.88292 -16.67323 -16.36334 -16.20132 -15.61827 -15.21464 -14.99091 -14.69403 -14.53658 -14.10069 -13.91149 -13.84756 -13.56209 -13.40380 -13.22078 -12.82516 -12.73188 -12.52179 -12.38657 -12.12918 -12.09588 -11.89006 -11.81878 -11.28348 -11.23262 -11.13006 -11.07648 -10.89850 -10.82801 -10.74008 -10.62027 -10.38173 -9.82093 -9.48054 -9.19849 -8.98640 -8.68885 -8.39720 -6.04628 -4.07876 0.89515 2.07513 2.15016 2.32051 2.78170 3.30173 3.34877 3.36984 3.56842 4.23554 4.41313 4.42289 4.47476 4.49093 4.61433 4.64031 4.70282 4.76773 4.96000 5.05053 5.08602 5.16132 5.18403 5.26820 5.28080 5.30665 5.31136 5.38923 5.53880 5.63253 5.69581 5.71695 5.73779 5.80459 5.85421 6.03189 6.15980 6.20521 6.51462 6.67477 6.96120 7.01300 7.41197 7.42200 7.59840 7.67570 7.72437 7.93935 8.35379 8.98900 9.56628 11.06573 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.011033 B = 0.002319 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.243199 B =12073.476133 C =13913.434747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.026 4.026 4 C 0.210 3.790 5 N -0.483 5.483 6 C 0.024 3.976 7 C -0.077 4.077 8 C -0.064 4.064 9 C 0.157 3.843 10 O -0.352 6.352 11 C 0.475 3.525 12 O -0.500 6.500 13 C 0.104 3.896 14 H 0.115 0.885 15 N -0.831 5.831 16 C -0.149 4.149 17 C -0.108 4.108 18 C 0.022 3.978 19 C -0.523 4.523 20 H 0.055 0.945 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.893 3.107 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.277 1.277 27 O -0.191 6.191 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.360 0.640 41 H 0.350 0.650 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.016 0.984 47 H 0.015 0.985 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.231 -18.399 -17.001 25.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.064 4.064 4 C 0.003 3.997 5 N -0.212 5.212 6 C -0.096 4.096 7 C -0.134 4.134 8 C -0.116 4.116 9 C 0.083 3.917 10 O -0.269 6.269 11 C 0.318 3.682 12 O -0.386 6.386 13 C -0.009 4.009 14 H 0.133 0.867 15 N -0.366 5.366 16 C -0.188 4.188 17 C -0.146 4.146 18 C -0.015 4.015 19 C -0.562 4.562 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 O -0.078 6.078 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.108 0.892 40 H 0.177 0.823 41 H 0.164 0.836 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.035 0.965 47 H 0.033 0.967 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.286 -19.010 -18.018 26.720 hybrid contribution 0.034 1.302 1.916 2.317 sum -5.252 -17.707 -16.102 24.503 Atomic orbital electron populations 1.21756 0.94424 1.02345 1.02387 1.21541 0.96693 0.94569 1.03168 1.20265 0.80762 0.99687 1.05695 1.26341 0.96212 0.98598 0.78525 1.70418 1.01344 1.19314 1.30164 1.21622 0.93662 1.02507 0.91851 1.20221 0.91803 1.03119 0.98298 1.22432 0.83262 1.11716 0.94237 1.20911 0.90040 0.82134 0.98607 1.86605 1.45481 1.30520 1.64259 1.23909 0.76864 0.93013 0.74441 1.90638 1.54871 1.42916 1.50222 1.21116 0.90053 0.88896 1.00871 0.86686 1.58677 1.15124 1.18937 1.43820 1.22449 1.00334 0.99425 0.96622 1.21661 1.00323 0.91453 1.01119 1.19078 0.94772 0.95465 0.92199 1.21195 1.19910 0.96983 1.18069 0.92676 1.25036 0.95043 0.98403 0.95994 1.69950 1.24258 1.36922 1.22295 0.86644 0.78483 0.84945 0.77846 1.20201 1.21276 1.20211 1.84400 1.16219 1.69535 1.37621 0.92206 0.92125 0.92199 0.91047 0.91386 0.88449 0.87318 0.90352 0.90013 0.90319 0.87545 0.89170 0.82335 0.83567 0.91577 0.90815 0.92737 0.93214 0.96514 0.96665 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.75 5.92 -26.73 -0.16 -0.91 16 3 C -0.03 -0.19 5.84 -27.88 -0.16 -0.35 16 4 C 0.21 2.36 7.60 -12.95 -0.10 2.26 16 5 N -0.48 -6.01 11.29 -7.36 -0.08 -6.09 16 6 C 0.02 0.29 7.11 -82.82 -0.59 -0.30 16 7 C -0.08 -0.66 10.05 36.01 0.36 -0.30 16 8 C -0.06 -0.78 7.03 -35.69 -0.25 -1.04 16 9 C 0.16 1.79 5.62 36.00 0.20 2.00 16 10 O -0.35 -4.78 10.20 -39.24 -0.40 -5.18 16 11 C 0.48 6.82 7.21 36.01 0.26 7.08 16 12 O -0.50 -7.96 16.00 -18.75 -0.30 -8.26 16 13 C 0.10 1.42 3.32 -68.86 -0.23 1.20 16 14 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 15 N -0.83 -10.81 8.94 -5.65 -0.05 -10.86 16 16 C -0.15 -2.38 4.84 -26.74 -0.13 -2.51 16 17 C -0.11 -2.04 4.92 -26.73 -0.13 -2.17 16 18 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 19 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 20 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 23 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 O -0.19 -2.45 10.78 5.35 0.06 -2.39 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.63 7.80 -51.93 -0.40 0.22 16 38 H 0.11 1.01 7.80 -51.93 -0.41 0.60 16 39 H 0.09 0.99 8.13 -51.93 -0.42 0.57 16 40 H 0.36 4.34 7.55 -39.29 -0.30 4.05 16 41 H 0.35 4.60 8.58 -39.30 -0.34 4.26 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.05 0.88 6.87 -51.93 -0.36 0.53 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 405.16 15.07 6.11 6.11 Total: -1.00 -33.27 405.16 -8.17 -41.44 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -8.11 Total: 3.16 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -1.11 Total: -8.31 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.60 Total: -42.98 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.64 Total: -15.83 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.27 -8.17 -41.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577612003.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.076 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds