Wall clock time and date at job start Tue Mar 31 2020 15:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47665 * 2 1 4 4 C 1.50700 * 109.47418 * 180.02562 * 3 2 1 5 5 N 1.30257 * 125.62054 * 89.97835 * 4 3 2 6 6 C 1.34469 * 108.69953 * 179.77631 * 5 4 3 7 7 C 1.50699 * 126.16697 * 180.26629 * 6 5 4 8 8 C 1.34332 * 107.67170 * 0.39033 * 6 5 4 9 9 C 1.50696 * 126.44435 * 179.87193 * 8 6 5 10 10 O 1.45207 * 109.47022 * 89.71899 * 9 8 6 11 11 C 1.34224 * 117.00170 * 180.02562 * 10 9 8 12 12 O 1.20826 * 120.00052 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99894 * 180.02562 * 11 10 9 14 14 H 1.09001 * 109.46817 * 319.98604 * 13 11 10 15 15 N 1.46910 * 109.46728 * 199.99550 * 13 11 10 16 16 C 1.52992 * 109.47798 * 79.99371 * 13 11 10 17 17 C 1.52997 * 109.47482 * 185.00026 * 16 13 11 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 13 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99611 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46725 * 60.00093 * 23 21 19 25 25 H 1.48505 * 109.46988 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47116 * 300.00069 * 23 21 19 27 27 O 1.33970 * 125.61570 * 269.99813 * 4 3 2 28 28 H 1.09002 * 109.47004 * 59.99330 * 1 2 3 29 29 H 1.08995 * 109.47613 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46743 * 300.00298 * 1 2 3 31 31 H 1.09011 * 109.47080 * 240.00314 * 2 1 3 32 32 H 1.09004 * 109.47511 * 120.00566 * 2 1 3 33 33 H 1.09004 * 109.47283 * 60.00033 * 3 2 1 34 34 H 1.09004 * 109.47118 * 300.00807 * 3 2 1 35 35 H 1.08997 * 109.47252 * 270.14827 * 7 6 5 36 36 H 1.09002 * 109.46959 * 30.14737 * 7 6 5 37 37 H 1.08997 * 109.47376 * 150.14620 * 7 6 5 38 38 H 1.08995 * 109.47305 * 329.71766 * 9 8 6 39 39 H 1.09004 * 109.47157 * 209.71520 * 9 8 6 40 40 H 1.00894 * 110.99558 * 176.04306 * 15 13 11 41 41 H 1.00892 * 110.99957 * 299.99600 * 15 13 11 42 42 H 1.09002 * 109.47103 * 64.99779 * 16 13 11 43 43 H 1.08998 * 109.46862 * 305.00591 * 16 13 11 44 44 H 1.09002 * 109.47153 * 59.99783 * 17 16 13 45 45 H 1.09001 * 109.46832 * 299.99974 * 17 16 13 46 46 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 47 47 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 48 48 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 7 4.3053 1.4421 -1.0598 6 6 5.5919 1.4471 -0.6690 7 6 6.7964 1.4543 -1.5746 8 6 5.6101 1.4418 0.6742 9 6 6.8344 1.4418 1.5529 10 8 7.2275 2.8108 1.8351 11 6 8.3089 2.9868 2.6106 12 8 8.9069 2.0286 3.0398 13 6 8.7764 4.3794 2.9469 14 1 8.6829 5.0163 2.0672 15 7 10.1820 4.3347 3.3718 16 6 7.9188 4.9458 4.0801 17 6 8.3103 6.4023 4.3372 18 6 7.4530 6.9683 5.4710 19 6 7.8383 8.4032 5.7237 20 1 8.6170 8.8650 5.1349 21 6 7.1966 9.1264 6.7067 22 7 6.2479 8.5643 7.4234 23 14 7.6746 10.9048 7.0205 24 1 7.4540 11.7016 5.7869 25 1 6.8416 11.4546 8.1200 26 1 9.1078 10.9719 7.4035 27 8 4.3277 1.4422 1.0881 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 7.0899 0.4284 -1.7970 36 1 6.5505 1.9711 -2.5022 37 1 7.6201 1.9685 -1.0796 38 1 7.6485 0.9280 1.0418 39 1 6.6106 0.9280 2.4879 40 1 10.5382 5.2634 3.5411 41 1 10.2951 3.7501 4.1863 42 1 8.0807 4.3608 4.9855 43 1 6.8668 4.8964 3.7991 44 1 8.1484 6.9873 3.4318 45 1 9.3623 6.4515 4.6183 46 1 6.4009 6.9191 5.1903 47 1 7.6153 6.3833 6.3761 48 1 5.7962 9.0731 8.1147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577612003.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:06 Heat of formation + Delta-G solvation = -120.670668 kcal Electronic energy + Delta-G solvation = -26739.467233 eV Core-core repulsion = 22794.121399 eV Total energy + Delta-G solvation = -3945.345834 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.56659 -41.75334 -38.35732 -37.33942 -36.46611 -36.24909 -35.33428 -33.34632 -33.05175 -30.26681 -29.49772 -29.30789 -27.34535 -25.66931 -24.43301 -23.26793 -22.49036 -22.08938 -21.64170 -21.56247 -19.18793 -18.49910 -18.37374 -17.79029 -17.60912 -17.24663 -16.52771 -16.38020 -16.18113 -15.98217 -15.66983 -15.30285 -14.96648 -14.54803 -14.40246 -14.32576 -14.18783 -14.16162 -13.88278 -13.62386 -13.52671 -13.28907 -13.01369 -12.92285 -12.69367 -12.58055 -12.50718 -12.42120 -12.33508 -12.07602 -11.93742 -11.75564 -11.67682 -11.61786 -11.51663 -11.38798 -11.13719 -10.56173 -9.89855 -9.78095 -8.20865 -6.32297 -0.00366 1.01374 1.18983 1.40420 1.43136 1.47423 1.50942 1.81734 2.40511 2.82020 3.12639 3.36831 3.52323 3.62565 3.65164 3.78290 3.85190 3.96296 3.96946 4.01253 4.05593 4.21439 4.34361 4.47966 4.48809 4.62664 4.63552 4.67287 4.68446 4.70063 4.87181 4.87532 4.95964 4.96626 5.09227 5.15370 5.15781 5.20551 5.21685 5.29197 5.40387 5.50619 5.70825 5.83708 5.94375 6.22256 6.40952 6.53655 6.57345 6.85525 7.37496 8.90763 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.011033 B = 0.002319 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.243199 B =12073.476133 C =13913.434747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.027 4.027 4 C 0.210 3.790 5 N -0.506 5.506 6 C 0.020 3.980 7 C -0.077 4.077 8 C -0.087 4.087 9 C 0.157 3.843 10 O -0.358 6.358 11 C 0.480 3.520 12 O -0.517 6.517 13 C 0.113 3.887 14 H 0.132 0.868 15 N -0.827 5.827 16 C -0.138 4.138 17 C -0.094 4.094 18 C 0.022 3.978 19 C -0.542 4.542 20 H 0.065 0.935 21 C -0.004 4.004 22 N -0.936 5.936 23 Si 0.965 3.035 24 H -0.266 1.266 25 H -0.286 1.286 26 H -0.265 1.265 27 O -0.209 6.209 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.128 0.872 39 H 0.090 0.910 40 H 0.366 0.634 41 H 0.350 0.650 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.064 0.936 46 H -0.012 1.012 47 H -0.012 1.012 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.518 -17.947 -18.288 26.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.065 4.065 4 C 0.004 3.996 5 N -0.236 5.236 6 C -0.100 4.100 7 C -0.134 4.134 8 C -0.139 4.139 9 C 0.084 3.916 10 O -0.275 6.275 11 C 0.323 3.677 12 O -0.405 6.405 13 C -0.001 4.001 14 H 0.150 0.850 15 N -0.362 5.362 16 C -0.178 4.178 17 C -0.131 4.131 18 C -0.015 4.015 19 C -0.580 4.580 20 H 0.084 0.916 21 C -0.201 4.201 22 N -0.576 5.576 23 Si 0.789 3.211 24 H -0.191 1.191 25 H -0.212 1.212 26 H -0.190 1.190 27 O -0.097 6.097 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.139 0.861 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.145 0.855 39 H 0.108 0.892 40 H 0.184 0.816 41 H 0.164 0.836 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.006 0.994 47 H 0.007 0.993 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.559 -18.559 -19.328 27.181 hybrid contribution -0.263 1.107 2.288 2.556 sum -4.822 -17.452 -17.039 24.863 Atomic orbital electron populations 1.21740 0.93041 1.02870 1.02930 1.21492 0.97748 0.93595 1.02562 1.20526 0.78429 1.00698 1.06817 1.27186 0.97474 0.96981 0.78003 1.70458 1.01885 1.20518 1.30725 1.22156 0.94357 1.01262 0.92213 1.20347 0.90707 1.04461 0.97842 1.22616 0.83305 1.13265 0.94681 1.21097 0.90512 0.81130 0.98881 1.86584 1.45014 1.31999 1.63897 1.23894 0.76773 0.92892 0.74181 1.90631 1.55471 1.43456 1.50924 1.21011 0.89775 0.88911 1.00366 0.85042 1.58694 1.14324 1.19369 1.43852 1.22265 1.00421 0.97621 0.97488 1.21434 0.99822 0.92958 0.98922 1.19010 0.94313 0.94799 0.93371 1.21699 1.19970 0.98235 1.18086 0.91634 1.26021 0.94950 1.03331 0.95826 1.70096 1.25595 1.38868 1.23048 0.85500 0.78523 0.79093 0.77939 1.19075 1.21170 1.18992 1.84395 1.16778 1.70009 1.38481 0.91494 0.91630 0.91829 0.91632 0.92032 0.87372 0.86061 0.88507 0.89655 0.89631 0.85467 0.89170 0.81618 0.83575 0.92302 0.91607 0.91846 0.91700 0.99378 0.99341 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 71.98 0.71 -0.49 16 2 C -0.12 -1.35 5.92 30.59 0.18 -1.17 16 3 C -0.03 -0.37 5.84 29.85 0.17 -0.20 16 4 C 0.21 4.69 7.60 88.34 0.67 5.36 16 5 N -0.51 -12.41 11.29 -291.98 -3.30 -15.71 16 6 C 0.02 0.47 7.11 41.26 0.29 0.76 16 7 C -0.08 -1.20 10.05 71.24 0.72 -0.49 16 8 C -0.09 -2.11 7.03 24.79 0.17 -1.94 16 9 C 0.16 3.50 5.62 71.23 0.40 3.90 16 10 O -0.36 -9.43 10.20 -51.36 -0.52 -9.96 16 11 C 0.48 13.21 7.21 71.24 0.51 13.72 16 12 O -0.52 -15.90 16.00 21.96 0.35 -15.55 16 13 C 0.11 2.91 3.32 44.16 0.15 3.06 16 14 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 15 N -0.83 -19.99 8.94 -171.79 -1.54 -21.53 16 16 C -0.14 -4.36 4.84 30.59 0.15 -4.21 16 17 C -0.09 -3.48 4.92 30.59 0.15 -3.33 16 18 C 0.02 1.14 4.97 29.85 0.15 1.28 16 19 C -0.54 -30.09 9.11 25.60 0.23 -29.86 16 20 H 0.07 3.42 7.74 -2.91 -0.02 3.39 16 21 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 22 N -0.94 -56.97 13.29 21.45 0.28 -56.69 16 23 Si 0.97 43.68 29.54 68.60 2.03 45.70 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 O -0.21 -5.40 10.78 -3.77 -0.04 -5.45 16 28 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.22 7.80 -2.39 -0.02 1.20 16 38 H 0.13 2.24 7.80 -2.39 -0.02 2.22 16 39 H 0.09 1.98 8.13 -2.38 -0.02 1.96 16 40 H 0.37 8.02 7.55 -89.70 -0.68 7.34 16 41 H 0.35 8.69 8.58 -89.70 -0.77 7.92 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 45 H 0.06 2.21 6.87 -2.39 -0.02 2.19 16 46 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 47 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 48 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -71.64 405.16 1.91 -69.73 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -0.48 Total: 22.76 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 5.13 Total: -13.33 kcal Atomic # 7 Polarization: -89.37 SS G_CDS: -4.55 Total: -93.92 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.21 Total: -30.95 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -71.64 1.91 -69.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577612003.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.937 kcal (2) G-P(sol) polarization free energy of solvation -71.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds