Wall clock time and date at job start Tue Mar 31 2020 14:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47062 * 2 1 4 4 C 1.50700 * 109.49855 * 59.93517 * 3 2 1 5 5 O 1.20821 * 120.00425 * 120.06224 * 4 3 2 6 6 O 1.34231 * 119.99467 * 300.06011 * 4 3 2 7 7 C 1.53040 * 109.49526 * 179.97438 * 3 2 1 8 8 C 1.53046 * 109.53810 * 58.61993 * 7 3 2 9 9 C 1.53182 * 109.31304 * 61.36115 * 8 7 3 10 10 N 1.46921 * 108.77949 * 305.36736 * 9 8 7 11 11 C 1.34774 * 120.63324 * 233.58337 * 10 9 8 12 12 O 1.21587 * 120.00091 * 185.02446 * 11 10 9 13 13 N 1.34783 * 119.99960 * 4.75197 * 11 10 9 14 14 C 1.46491 * 120.00038 * 175.26988 * 13 11 10 15 15 C 1.53001 * 109.47040 * 185.06715 * 14 13 11 16 16 C 1.50698 * 115.55248 * 281.40539 * 15 14 13 17 17 H 1.08003 * 119.99899 * 146.98198 * 16 15 14 18 18 C 1.37874 * 120.00103 * 326.98167 * 16 15 14 19 19 N 1.31516 * 120.00044 * 164.10049 * 18 16 15 20 20 Si 1.86800 * 120.00088 * 344.10574 * 18 16 15 21 21 H 1.48500 * 109.47317 * 95.81316 * 20 18 16 22 22 H 1.48502 * 109.47045 * 215.81272 * 20 18 16 23 23 H 1.48499 * 109.47040 * 335.81146 * 20 18 16 24 24 C 1.53008 * 117.49774 * 135.70033 * 15 14 13 25 25 C 1.53001 * 117.49802 * 67.07789 * 15 14 13 26 26 C 1.46928 * 118.73947 * 53.85955 * 10 9 8 27 27 H 1.08998 * 109.47190 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47382 * 300.00371 * 1 2 3 29 29 H 1.09003 * 109.46891 * 59.99996 * 1 2 3 30 30 H 1.08994 * 109.47382 * 239.99629 * 2 1 3 31 31 H 1.09008 * 109.46591 * 119.99637 * 2 1 3 32 32 H 0.96706 * 116.99578 * 180.02562 * 6 4 3 33 33 H 1.09005 * 109.46376 * 298.60013 * 7 3 2 34 34 H 1.09001 * 109.46030 * 178.63567 * 7 3 2 35 35 H 1.09001 * 109.49287 * 301.41198 * 8 7 3 36 36 H 1.08998 * 109.52210 * 181.33392 * 8 7 3 37 37 H 1.09000 * 109.58734 * 185.57477 * 9 8 7 38 38 H 1.09001 * 109.58296 * 65.15714 * 9 8 7 39 39 H 0.97002 * 119.99704 * 355.28134 * 13 11 10 40 40 H 1.08996 * 109.47727 * 305.07452 * 14 13 11 41 41 H 1.09003 * 109.47186 * 65.07299 * 14 13 11 42 42 H 0.97002 * 120.00281 * 180.02562 * 19 18 16 43 43 H 1.08999 * 117.49756 * 0.02562 * 24 15 14 44 44 H 1.08994 * 117.50018 * 145.02562 * 24 15 14 45 45 H 1.08998 * 117.50057 * 214.97515 * 25 15 14 46 46 H 1.09000 * 117.49794 * 359.97438 * 25 15 14 47 47 H 1.08998 * 109.58590 * 65.92738 * 26 10 9 48 48 H 1.08998 * 109.58848 * 186.35506 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5367 2.1540 1.2294 5 8 2.3211 2.6146 2.0246 6 8 0.2168 2.2760 1.4411 7 6 3.5704 1.4432 0.0006 8 6 4.0831 0.6922 -1.2304 9 6 3.5998 1.4057 -2.4968 10 7 2.1378 1.5382 -2.4363 11 6 1.3656 1.0940 -3.4476 12 8 0.1659 1.2908 -3.4282 13 7 1.9239 0.4364 -4.4833 14 6 1.0749 -0.1367 -5.5304 15 6 1.9403 -0.9302 -6.5113 16 6 2.6966 -0.1082 -7.5229 17 1 3.6654 -0.4363 -7.8697 18 6 2.1518 1.0627 -8.0058 19 7 2.9132 1.9329 -8.6324 20 14 0.3322 1.4132 -7.7698 21 1 0.1433 2.2587 -6.5637 22 1 -0.1931 2.1265 -8.9616 23 1 -0.4000 0.1330 -7.5965 24 6 1.4280 -2.3017 -6.9558 25 6 2.6116 -2.2030 -5.9913 26 6 1.5339 2.1696 -1.2551 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 -0.0581 2.7407 2.2433 33 1 3.9335 0.9515 0.9032 34 1 3.9331 2.4708 -0.0238 35 1 3.7005 -0.3284 -1.2193 36 1 5.1728 0.6723 -1.2173 37 1 3.8778 0.8215 -3.3740 38 1 4.0542 2.3947 -2.5549 39 1 2.8880 0.3425 -4.5350 40 1 0.3374 -0.7996 -5.0781 41 1 0.5640 0.6653 -6.0634 42 1 2.5300 2.7568 -8.9718 43 1 0.4741 -2.6384 -6.5498 44 1 1.6378 -2.6096 -7.9801 45 1 3.6001 -2.4460 -6.3811 46 1 2.4370 -2.4747 -4.9503 47 1 1.8233 3.2197 -1.2140 48 1 0.4484 2.0896 -1.3127 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589596958.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:20 Heat of formation + Delta-G solvation = -78.664462 kcal Electronic energy + Delta-G solvation = -29790.767567 eV Core-core repulsion = 25847.243259 eV Total energy + Delta-G solvation = -3943.524308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.34560 -39.91200 -38.03586 -36.93908 -36.41110 -34.48161 -33.21803 -32.30133 -32.26343 -29.89869 -27.35887 -25.67829 -25.26582 -24.32455 -23.25525 -22.28520 -21.54675 -20.00653 -19.50398 -18.67233 -18.22716 -18.01478 -16.98665 -16.38955 -16.14632 -15.87479 -15.55391 -14.91509 -14.87010 -14.49893 -14.11878 -13.96825 -13.81938 -13.61720 -13.37914 -13.12008 -12.96518 -12.87367 -12.48113 -12.23390 -12.04127 -11.98317 -11.82853 -11.32779 -11.18589 -11.03752 -10.96690 -10.86898 -10.65229 -10.64590 -10.47421 -10.41104 -10.10540 -9.81238 -9.48717 -9.39323 -9.03394 -8.65101 -8.42220 -8.07964 -6.26263 -4.18896 1.91578 2.64223 2.97902 3.30819 3.40174 3.42053 3.55188 4.16334 4.28923 4.32589 4.43968 4.53755 4.77380 4.77877 4.86069 5.04021 5.19087 5.21738 5.31083 5.37138 5.41856 5.53188 5.58047 5.60889 5.67798 5.67906 5.74427 5.85516 5.86906 5.91331 6.05667 6.11181 6.17045 6.18142 6.24048 6.38701 6.40617 6.44326 6.55994 6.65578 6.84080 7.03772 7.10715 7.23544 7.63115 7.64721 8.35607 8.39022 8.79221 8.98054 9.39661 10.84758 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018432 B = 0.003803 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.750919 B = 7361.589460 C = 7456.283185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.108 4.108 3 C -0.065 4.065 4 C 0.494 3.506 5 O -0.515 6.515 6 O -0.503 6.503 7 C -0.098 4.098 8 C -0.135 4.135 9 C 0.106 3.894 10 N -0.629 5.629 11 C 0.706 3.294 12 O -0.595 6.595 13 N -0.720 5.720 14 C 0.167 3.833 15 C -0.005 4.005 16 C -0.492 4.492 17 H 0.079 0.921 18 C 0.083 3.917 19 N -0.881 5.881 20 Si 0.885 3.115 21 H -0.275 1.275 22 H -0.299 1.299 23 H -0.264 1.264 24 C -0.200 4.200 25 C -0.187 4.187 26 C 0.143 3.857 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.404 0.596 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.402 0.598 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.267 0.733 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.217 -2.012 19.220 19.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.145 4.145 3 C -0.067 4.067 4 C 0.336 3.664 5 O -0.403 6.403 6 O -0.315 6.315 7 C -0.136 4.136 8 C -0.174 4.174 9 C -0.018 4.018 10 N -0.367 5.367 11 C 0.407 3.593 12 O -0.474 6.474 13 N -0.376 5.376 14 C 0.044 3.956 15 C -0.006 4.006 16 C -0.528 4.528 17 H 0.097 0.903 18 C -0.121 4.121 19 N -0.517 5.517 20 Si 0.717 3.283 21 H -0.202 1.202 22 H -0.228 1.228 23 H -0.189 1.189 24 C -0.238 4.238 25 C -0.225 4.225 26 C 0.019 3.981 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.263 0.737 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.239 0.761 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.739 -1.790 18.933 19.032 hybrid contribution -0.563 0.554 0.574 0.976 sum -1.302 -1.236 19.507 19.590 Atomic orbital electron populations 1.22129 0.94414 1.01972 1.04072 1.21548 0.97431 0.92496 1.03019 1.21141 0.97435 0.97128 0.91008 1.23284 0.79983 0.76148 0.86973 1.90706 1.57057 1.45832 1.46656 1.84721 1.26011 1.72229 1.48510 1.21458 0.91004 1.02185 0.98950 1.22013 1.01378 1.00104 0.93858 1.21720 0.80129 1.01291 0.98620 1.47082 1.06112 1.64593 1.18947 1.15853 0.84941 0.78529 0.79935 1.90872 1.13271 1.63298 1.79980 1.45237 1.10926 1.58250 1.23166 1.21182 0.91737 0.95915 0.86811 1.19545 0.97818 0.86685 0.96594 1.20273 1.04566 1.05090 1.22916 0.90284 1.24963 0.97647 0.95128 0.94396 1.69937 1.35413 1.08559 1.37743 0.86898 0.86285 0.79016 0.76144 1.20231 1.22762 1.18949 1.23129 0.96271 1.05319 0.99088 1.22775 0.96982 1.05542 0.97196 1.21444 1.00805 0.94628 0.81228 0.92887 0.90757 0.91101 0.89792 0.91789 0.73745 0.90723 0.90712 0.90690 0.89849 0.89322 0.91014 0.76094 0.92924 0.92814 0.92323 0.91187 0.89348 0.89783 0.90933 0.91604 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 9.06 37.16 0.34 -1.54 16 2 C -0.11 -1.12 4.49 -26.73 -0.12 -1.24 16 3 C -0.06 -0.68 0.51 -155.32 -0.08 -0.76 16 4 C 0.49 5.23 6.86 36.01 0.25 5.47 16 5 O -0.51 -6.61 16.74 -18.75 -0.31 -6.92 16 6 O -0.50 -4.17 10.27 -39.26 -0.40 -4.58 16 7 C -0.10 -0.94 4.00 -26.69 -0.11 -1.04 16 8 C -0.14 -1.21 5.74 -26.61 -0.15 -1.36 16 9 C 0.11 1.20 6.43 -3.72 -0.02 1.18 16 10 N -0.63 -9.00 2.40 -178.24 -0.43 -9.43 16 11 C 0.71 13.25 8.30 -86.91 -0.72 12.52 16 12 O -0.60 -13.19 15.73 5.29 0.08 -13.10 16 13 N -0.72 -13.86 5.45 -65.23 -0.36 -14.22 16 14 C 0.17 3.65 4.63 -4.05 -0.02 3.63 16 15 C -0.01 -0.11 1.30 -155.66 -0.20 -0.31 16 16 C -0.49 -12.90 9.56 -34.44 -0.33 -13.23 16 17 H 0.08 2.23 8.06 -52.48 -0.42 1.81 16 18 C 0.08 2.29 5.40 -17.82 -0.10 2.20 16 19 N -0.88 -25.63 13.96 55.43 0.77 -24.86 16 20 Si 0.88 22.32 24.32 -169.99 -4.13 18.19 16 21 H -0.27 -7.19 6.87 56.52 0.39 -6.81 16 22 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 23 H -0.26 -6.43 6.81 56.52 0.38 -6.04 16 24 C -0.20 -3.98 9.88 -26.72 -0.26 -4.24 16 25 C -0.19 -3.49 9.93 -26.73 -0.27 -3.76 16 26 C 0.14 1.82 4.86 -3.49 -0.02 1.80 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.75 5.32 -51.93 -0.28 0.47 16 29 H 0.07 0.97 6.28 -51.93 -0.33 0.65 16 30 H 0.08 0.96 5.98 -51.93 -0.31 0.65 16 31 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.40 1.61 9.10 45.56 0.41 2.03 16 33 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 34 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 35 H 0.07 0.68 6.34 -51.93 -0.33 0.35 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.04 5.57 -51.93 -0.29 0.75 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.40 7.06 5.93 -40.82 -0.24 6.81 16 40 H 0.05 1.11 7.96 -51.93 -0.41 0.70 16 41 H 0.05 1.33 1.79 -51.93 -0.09 1.24 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 44 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 45 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.11 1.59 5.10 -51.93 -0.26 1.33 16 LS Contribution 365.75 15.07 5.51 5.51 Total: -1.00 -32.92 365.75 -7.44 -40.36 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -6.36 Total: 9.72 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -1.81 Total: -0.68 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.01 Total: -48.50 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.63 Total: -24.60 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.13 Total: 18.19 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.92 -7.44 -40.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589596958.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.306 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds