Wall clock time and date at job start Tue Mar 31 2020 14:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47062 * 2 1 4 4 C 1.50700 * 109.49855 * 59.93517 * 3 2 1 5 5 O 1.20821 * 120.00425 * 120.06224 * 4 3 2 6 6 O 1.34231 * 119.99467 * 300.06011 * 4 3 2 7 7 C 1.53040 * 109.49526 * 179.97438 * 3 2 1 8 8 C 1.53046 * 109.53810 * 58.61993 * 7 3 2 9 9 C 1.53182 * 109.31304 * 61.36115 * 8 7 3 10 10 N 1.46921 * 108.77949 * 305.36736 * 9 8 7 11 11 C 1.34774 * 120.63324 * 233.58337 * 10 9 8 12 12 O 1.21587 * 120.00091 * 185.02446 * 11 10 9 13 13 N 1.34783 * 119.99960 * 4.75197 * 11 10 9 14 14 C 1.46491 * 120.00038 * 175.26988 * 13 11 10 15 15 C 1.53001 * 109.47040 * 185.06715 * 14 13 11 16 16 C 1.50698 * 115.55248 * 281.40539 * 15 14 13 17 17 H 1.08003 * 119.99899 * 146.98198 * 16 15 14 18 18 C 1.37874 * 120.00103 * 326.98167 * 16 15 14 19 19 N 1.31516 * 120.00044 * 164.10049 * 18 16 15 20 20 Si 1.86800 * 120.00088 * 344.10574 * 18 16 15 21 21 H 1.48500 * 109.47317 * 95.81316 * 20 18 16 22 22 H 1.48502 * 109.47045 * 215.81272 * 20 18 16 23 23 H 1.48499 * 109.47040 * 335.81146 * 20 18 16 24 24 C 1.53008 * 117.49774 * 135.70033 * 15 14 13 25 25 C 1.53001 * 117.49802 * 67.07789 * 15 14 13 26 26 C 1.46928 * 118.73947 * 53.85955 * 10 9 8 27 27 H 1.08998 * 109.47190 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47382 * 300.00371 * 1 2 3 29 29 H 1.09003 * 109.46891 * 59.99996 * 1 2 3 30 30 H 1.08994 * 109.47382 * 239.99629 * 2 1 3 31 31 H 1.09008 * 109.46591 * 119.99637 * 2 1 3 32 32 H 0.96706 * 116.99578 * 180.02562 * 6 4 3 33 33 H 1.09005 * 109.46376 * 298.60013 * 7 3 2 34 34 H 1.09001 * 109.46030 * 178.63567 * 7 3 2 35 35 H 1.09001 * 109.49287 * 301.41198 * 8 7 3 36 36 H 1.08998 * 109.52210 * 181.33392 * 8 7 3 37 37 H 1.09000 * 109.58734 * 185.57477 * 9 8 7 38 38 H 1.09001 * 109.58296 * 65.15714 * 9 8 7 39 39 H 0.97002 * 119.99704 * 355.28134 * 13 11 10 40 40 H 1.08996 * 109.47727 * 305.07452 * 14 13 11 41 41 H 1.09003 * 109.47186 * 65.07299 * 14 13 11 42 42 H 0.97002 * 120.00281 * 180.02562 * 19 18 16 43 43 H 1.08999 * 117.49756 * 0.02562 * 24 15 14 44 44 H 1.08994 * 117.50018 * 145.02562 * 24 15 14 45 45 H 1.08998 * 117.50057 * 214.97515 * 25 15 14 46 46 H 1.09000 * 117.49794 * 359.97438 * 25 15 14 47 47 H 1.08998 * 109.58590 * 65.92738 * 26 10 9 48 48 H 1.08998 * 109.58848 * 186.35506 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5367 2.1540 1.2294 5 8 2.3211 2.6146 2.0246 6 8 0.2168 2.2760 1.4411 7 6 3.5704 1.4432 0.0006 8 6 4.0831 0.6922 -1.2304 9 6 3.5998 1.4057 -2.4968 10 7 2.1378 1.5382 -2.4363 11 6 1.3656 1.0940 -3.4476 12 8 0.1659 1.2908 -3.4282 13 7 1.9239 0.4364 -4.4833 14 6 1.0749 -0.1367 -5.5304 15 6 1.9403 -0.9302 -6.5113 16 6 2.6966 -0.1082 -7.5229 17 1 3.6654 -0.4363 -7.8697 18 6 2.1518 1.0627 -8.0058 19 7 2.9132 1.9329 -8.6324 20 14 0.3322 1.4132 -7.7698 21 1 0.1433 2.2587 -6.5637 22 1 -0.1931 2.1265 -8.9616 23 1 -0.4000 0.1330 -7.5965 24 6 1.4280 -2.3017 -6.9558 25 6 2.6116 -2.2030 -5.9913 26 6 1.5339 2.1696 -1.2551 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 -0.0581 2.7407 2.2433 33 1 3.9335 0.9515 0.9032 34 1 3.9331 2.4708 -0.0238 35 1 3.7005 -0.3284 -1.2193 36 1 5.1728 0.6723 -1.2173 37 1 3.8778 0.8215 -3.3740 38 1 4.0542 2.3947 -2.5549 39 1 2.8880 0.3425 -4.5350 40 1 0.3374 -0.7996 -5.0781 41 1 0.5640 0.6653 -6.0634 42 1 2.5300 2.7568 -8.9718 43 1 0.4741 -2.6384 -6.5498 44 1 1.6378 -2.6096 -7.9801 45 1 3.6001 -2.4460 -6.3811 46 1 2.4370 -2.4747 -4.9503 47 1 1.8233 3.2197 -1.2140 48 1 0.4484 2.0896 -1.3127 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589596958.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:19 Heat of formation + Delta-G solvation = -100.936346 kcal Electronic energy + Delta-G solvation = -29791.733348 eV Core-core repulsion = 25847.243259 eV Total energy + Delta-G solvation = -3944.490090 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.28929 -41.10983 -39.29309 -38.41712 -37.21668 -35.66489 -34.61194 -34.36742 -33.20377 -30.82745 -28.97883 -27.33942 -26.24748 -25.62615 -24.12221 -23.21395 -23.02382 -21.32480 -21.12172 -19.90673 -19.22665 -19.04193 -18.31835 -17.74818 -17.59705 -17.22097 -16.78460 -16.26403 -15.86044 -15.66413 -15.32085 -15.23356 -15.02334 -14.80998 -14.74253 -14.46720 -14.35256 -14.05103 -13.81066 -13.69730 -13.22778 -12.98179 -12.78781 -12.69280 -12.49086 -12.13436 -12.12820 -12.04794 -11.94244 -11.89215 -11.72673 -11.54269 -11.50259 -11.33301 -11.27410 -11.08389 -10.73632 -10.38533 -10.06076 -9.48904 -8.39255 -6.30205 1.06011 1.27896 1.35331 1.40012 1.57528 2.04314 2.14460 2.25527 2.77320 3.00451 3.40431 3.52308 3.58268 3.68218 3.93131 3.96094 4.04269 4.17141 4.24733 4.36904 4.39499 4.43070 4.45298 4.47983 4.54775 4.61596 4.72260 4.77521 4.78605 4.88053 4.94620 4.98872 5.02162 5.06118 5.08970 5.23160 5.25239 5.37424 5.48245 5.49679 5.52406 5.56864 5.59299 5.65904 5.89390 6.28372 6.68133 6.96746 6.98437 7.29203 7.53906 8.75678 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018432 B = 0.003803 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.750919 B = 7361.589460 C = 7456.283185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.104 4.104 3 C -0.060 4.060 4 C 0.502 3.498 5 O -0.537 6.537 6 O -0.502 6.502 7 C -0.095 4.095 8 C -0.125 4.125 9 C 0.098 3.902 10 N -0.620 5.620 11 C 0.702 3.298 12 O -0.634 6.634 13 N -0.719 5.719 14 C 0.172 3.828 15 C -0.037 4.037 16 C -0.479 4.479 17 H 0.051 0.949 18 C 0.042 3.958 19 N -0.926 5.926 20 Si 0.936 3.064 21 H -0.296 1.296 22 H -0.305 1.305 23 H -0.250 1.250 24 C -0.192 4.192 25 C -0.155 4.155 26 C 0.141 3.859 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.424 0.576 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.408 0.592 40 H 0.062 0.938 41 H 0.025 0.975 42 H 0.266 0.734 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.101 0.899 47 H 0.072 0.928 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.176 -3.644 21.480 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.141 4.141 3 C -0.062 4.062 4 C 0.344 3.656 5 O -0.427 6.427 6 O -0.315 6.315 7 C -0.133 4.133 8 C -0.163 4.163 9 C -0.024 4.024 10 N -0.357 5.357 11 C 0.403 3.597 12 O -0.516 6.516 13 N -0.376 5.376 14 C 0.049 3.951 15 C -0.038 4.038 16 C -0.516 4.516 17 H 0.069 0.931 18 C -0.158 4.158 19 N -0.564 5.564 20 Si 0.769 3.231 21 H -0.225 1.225 22 H -0.234 1.234 23 H -0.175 1.175 24 C -0.230 4.230 25 C -0.192 4.192 26 C 0.017 3.983 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.286 0.714 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.247 0.753 40 H 0.080 0.920 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.119 0.881 47 H 0.090 0.910 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.331 -3.440 21.232 21.511 hybrid contribution -0.671 1.039 -0.060 1.239 sum -1.002 -2.401 21.172 21.331 Atomic orbital electron populations 1.22070 0.95110 1.01885 1.03054 1.21522 0.96733 0.92378 1.03458 1.21080 0.98339 0.96945 0.89840 1.23150 0.80340 0.75568 0.86515 1.90705 1.57727 1.46816 1.47427 1.84667 1.24842 1.72226 1.49802 1.21460 0.89912 1.02350 0.99563 1.21968 1.02771 0.99584 0.91930 1.21987 0.78122 1.02264 1.00042 1.47097 1.07166 1.63342 1.18099 1.16009 0.84729 0.78452 0.80476 1.90840 1.15165 1.64743 1.80888 1.45128 1.11047 1.58519 1.22902 1.20952 0.92069 0.95007 0.87122 1.19409 0.99874 0.87552 0.96964 1.20441 1.03510 1.04989 1.22683 0.93094 1.25448 0.99958 0.95551 0.94848 1.70026 1.36642 1.09408 1.40322 0.86075 0.83628 0.78877 0.74545 1.22521 1.23367 1.17457 1.23167 0.97964 1.02255 0.99635 1.22812 0.96716 1.01176 0.98502 1.21502 0.99850 0.95230 0.81686 0.92535 0.89774 0.94048 0.90605 0.89954 0.71396 0.89749 0.90871 0.90418 0.87372 0.89682 0.90105 0.75256 0.91981 0.95786 0.92515 0.89086 0.89710 0.89437 0.88116 0.91025 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 9.06 71.98 0.65 -2.81 16 2 C -0.10 -1.94 4.49 30.60 0.14 -1.80 16 3 C -0.06 -1.15 0.51 -52.70 -0.03 -1.18 16 4 C 0.50 9.64 6.86 71.24 0.49 10.13 16 5 O -0.54 -12.68 16.74 21.98 0.37 -12.32 16 6 O -0.50 -7.42 10.27 -51.43 -0.53 -7.94 16 7 C -0.10 -1.56 4.00 30.62 0.12 -1.43 16 8 C -0.12 -1.85 5.74 30.67 0.18 -1.68 16 9 C 0.10 2.05 6.43 86.36 0.56 2.60 16 10 N -0.62 -17.22 2.40 -836.09 -2.01 -19.23 16 11 C 0.70 26.16 8.30 179.05 1.49 27.64 16 12 O -0.63 -28.47 15.73 -3.99 -0.06 -28.54 16 13 N -0.72 -27.14 5.45 -478.55 -2.61 -29.75 16 14 C 0.17 7.37 4.63 86.38 0.40 7.77 16 15 C -0.04 -1.56 1.30 -52.93 -0.07 -1.63 16 16 C -0.48 -25.15 9.56 25.60 0.24 -24.91 16 17 H 0.05 2.92 8.06 -2.91 -0.02 2.89 16 18 C 0.04 2.34 5.40 84.65 0.46 2.80 16 19 N -0.93 -55.28 13.96 21.45 0.30 -54.98 16 20 Si 0.94 47.30 24.32 68.60 1.67 48.97 16 21 H -0.30 -15.83 6.87 99.48 0.68 -15.14 16 22 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 23 H -0.25 -11.83 6.81 99.48 0.68 -11.15 16 24 C -0.19 -7.09 9.88 30.60 0.30 -6.78 16 25 C -0.15 -5.26 9.93 30.60 0.30 -4.96 16 26 C 0.14 3.49 4.86 86.51 0.42 3.91 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.56 5.32 -2.39 -0.01 1.55 16 29 H 0.04 1.13 6.28 -2.39 -0.01 1.11 16 30 H 0.08 1.57 5.98 -2.39 -0.01 1.55 16 31 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.42 2.48 9.10 -74.05 -0.67 1.80 16 33 H 0.08 1.28 8.07 -2.38 -0.02 1.26 16 34 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 35 H 0.08 1.16 6.34 -2.39 -0.02 1.15 16 36 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.09 1.85 5.57 -2.39 -0.01 1.84 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.41 13.93 5.93 -92.71 -0.55 13.38 16 40 H 0.06 2.51 7.96 -2.39 -0.02 2.49 16 41 H 0.02 1.20 1.79 -2.39 0.00 1.20 16 42 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.09 3.01 8.10 -2.39 -0.02 2.99 16 44 H 0.08 3.19 8.14 -2.39 -0.02 3.18 16 45 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 46 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 47 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.09 2.67 5.10 -2.39 -0.01 2.66 16 Total: -1.00 -72.40 365.75 2.51 -69.89 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -0.27 Total: 26.22 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 5.65 Total: 7.68 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -4.32 Total: -103.96 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: -0.22 Total: -48.80 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.67 Total: 48.97 kcal Total: -72.40 2.51 -69.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589596958.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.049 kcal (2) G-P(sol) polarization free energy of solvation -72.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds