Wall clock time and date at job start Tue Mar 31 2020 13:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00210 * 2 1 4 4 H 1.48496 * 109.46974 * 269.99832 * 3 2 1 5 5 H 1.48500 * 109.47095 * 29.99722 * 3 2 1 6 6 H 1.48498 * 109.46914 * 149.99868 * 3 2 1 7 7 C 1.37878 * 119.99491 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00163 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.49610 * 59.93926 * 9 7 2 11 11 C 1.53041 * 109.49615 * 180.02562 * 9 7 2 12 12 C 1.53040 * 109.53792 * 181.31758 * 11 9 7 13 13 C 1.53192 * 109.31340 * 298.63286 * 12 11 9 14 14 N 1.46923 * 108.77180 * 54.63452 * 13 12 11 15 15 C 1.34780 * 120.62755 * 126.37432 * 14 13 12 16 16 O 1.21595 * 119.99640 * 185.22532 * 15 14 13 17 17 N 1.34773 * 120.00479 * 5.21882 * 15 14 13 18 18 C 1.46493 * 120.00373 * 175.01708 * 17 15 14 19 19 C 1.53000 * 109.47398 * 154.99945 * 18 17 15 20 20 C 1.52994 * 109.47440 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.47389 * 300.00474 * 20 19 18 22 22 C 1.50701 * 109.47337 * 179.97438 * 21 20 19 23 23 O 1.20830 * 119.99776 * 359.72544 * 22 21 20 24 24 O 1.34228 * 120.00095 * 179.97438 * 22 21 20 25 25 C 1.53000 * 109.47217 * 59.99389 * 21 20 19 26 26 C 1.52994 * 109.47115 * 300.00383 * 25 21 20 27 27 C 1.46924 * 118.74053 * 306.64251 * 14 13 12 28 28 H 0.97005 * 120.00224 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46128 * 61.29440 * 11 9 7 30 30 H 1.09000 * 109.45635 * 301.33617 * 11 9 7 31 31 H 1.09000 * 109.49544 * 178.67760 * 12 11 9 32 32 H 1.09007 * 109.49848 * 58.58768 * 12 11 9 33 33 H 1.09002 * 109.58343 * 294.84733 * 13 12 11 34 34 H 1.08998 * 109.70413 * 174.48972 * 13 12 11 35 35 H 0.97010 * 119.99460 * 355.01743 * 17 15 14 36 36 H 1.08999 * 109.47351 * 34.99745 * 18 17 15 37 37 H 1.09002 * 109.46850 * 60.00108 * 19 18 17 38 38 H 1.08995 * 109.47301 * 300.00444 * 19 18 17 39 39 H 1.09005 * 109.47671 * 180.02562 * 20 19 18 40 40 H 1.08999 * 109.46992 * 59.99994 * 20 19 18 41 41 H 1.08999 * 109.46662 * 299.99722 * 21 20 19 42 42 H 0.96700 * 117.00155 * 179.72922 * 24 22 21 43 43 H 1.08999 * 109.47033 * 60.00560 * 25 21 20 44 44 H 1.08995 * 109.46847 * 180.02562 * 25 21 20 45 45 H 1.09002 * 109.46995 * 299.99585 * 26 25 21 46 46 H 1.09000 * 109.46956 * 179.97438 * 26 25 21 47 47 H 1.09008 * 109.58621 * 173.14630 * 27 14 13 48 48 H 1.09001 * 109.58850 * 293.56997 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6229 -2.5566 -0.8896 11 6 2.2448 -3.6629 -0.0005 12 6 1.4808 -4.9885 -0.0337 13 6 0.6055 -5.1003 1.2186 14 7 -0.2530 -3.9110 1.3031 15 6 -1.5894 -4.0360 1.4248 16 8 -2.2974 -3.0478 1.3982 17 7 -2.1412 -5.2564 1.5758 18 6 -3.5803 -5.3848 1.8172 19 6 -4.0560 -6.7602 1.3451 20 6 -5.5589 -6.8947 1.5978 21 6 -5.8399 -6.7438 3.0942 22 6 -7.3204 -6.8756 3.3431 23 8 -8.0740 -7.0653 2.4179 24 8 -7.8024 -6.7773 4.5920 25 6 -5.3643 -5.3684 3.5664 26 6 -3.8614 -5.2341 3.3136 27 6 0.3725 -2.5827 1.2465 28 1 -0.4851 0.8401 0.0004 29 1 2.8560 -3.6184 0.9009 30 1 2.8870 -3.5918 -0.8784 31 1 2.1895 -5.8163 -0.0574 32 1 0.8505 -5.0231 -0.9224 33 1 1.2394 -5.1571 2.1035 34 1 -0.0144 -5.9946 1.1550 35 1 -1.5852 -6.0497 1.5245 36 1 -4.1118 -4.6081 1.2674 37 1 -3.5245 -7.5369 1.8950 38 1 -3.8554 -6.8679 0.2792 39 1 -5.8977 -7.8747 1.2619 40 1 -6.0906 -6.1179 1.0483 41 1 -5.3082 -7.5205 3.6438 42 1 -8.7592 -6.8646 4.7015 43 1 -5.8960 -4.5917 3.0168 44 1 -5.5641 -5.2612 4.6325 45 1 -3.3297 -6.0108 3.8633 46 1 -3.5226 -4.2540 3.6496 47 1 -0.4011 -1.8162 1.1988 48 1 0.9869 -2.4300 2.1337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594605475.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:40 Heat of formation + Delta-G solvation = -141.115454 kcal Electronic energy + Delta-G solvation = -28398.058891 eV Core-core repulsion = 24451.826505 eV Total energy + Delta-G solvation = -3946.232386 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.87453 -39.85220 -38.26984 -36.67524 -36.35325 -34.06874 -33.19975 -31.74380 -31.04892 -30.04100 -29.37896 -25.13195 -24.92111 -23.68903 -22.98015 -21.81343 -21.32577 -20.21240 -19.90690 -18.71031 -18.29679 -17.50545 -17.03566 -16.32310 -16.06437 -15.91490 -14.90135 -14.82734 -14.44187 -14.28260 -13.99250 -13.84038 -13.68871 -13.43730 -13.11902 -12.99943 -12.60674 -12.51609 -12.45261 -12.10923 -11.93968 -11.86082 -11.72004 -11.51010 -11.38109 -10.96593 -10.89989 -10.73762 -10.66102 -10.48310 -10.40309 -10.37052 -10.20063 -9.84947 -9.39313 -9.06738 -8.92300 -8.71239 -8.38669 -7.61613 -5.95227 -4.04564 1.90293 2.71931 3.22294 3.33854 3.40440 3.42502 3.86107 4.28434 4.37117 4.40052 4.47432 4.71429 4.80825 4.94351 5.04880 5.21159 5.22589 5.25555 5.28335 5.34339 5.49512 5.51089 5.58660 5.63106 5.77088 5.83707 5.89850 5.96793 5.98455 6.13098 6.17638 6.21627 6.25667 6.33209 6.61416 6.69525 6.83081 6.88971 7.01616 7.07382 7.38929 7.54438 7.58650 7.78013 7.96524 8.10221 8.44256 8.62791 8.99155 9.29939 9.60859 11.09530 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.021026 B = 0.002638 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.385555 B =10609.650112 C =11478.143059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.039 3.961 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.133 4.133 13 C 0.116 3.884 14 N -0.623 5.623 15 C 0.700 3.300 16 O -0.581 6.581 17 N -0.754 5.754 18 C 0.161 3.839 19 C -0.124 4.124 20 C -0.100 4.100 21 C -0.080 4.080 22 C 0.483 3.517 23 O -0.516 6.516 24 O -0.516 6.516 25 C -0.107 4.107 26 C -0.128 4.128 27 C 0.129 3.871 28 H 0.263 0.737 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.389 0.611 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.408 0.592 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.123 0.877 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.439 -18.101 8.029 21.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.147 4.147 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.359 5.359 15 C 0.401 3.599 16 O -0.458 6.458 17 N -0.412 5.412 18 C 0.055 3.945 19 C -0.162 4.162 20 C -0.138 4.138 21 C -0.099 4.099 22 C 0.325 3.675 23 O -0.404 6.404 24 O -0.328 6.328 25 C -0.145 4.145 26 C -0.167 4.167 27 C 0.008 3.992 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.225 0.775 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.128 0.872 42 H 0.267 0.733 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.141 0.859 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.882 -17.206 7.719 21.291 hybrid contribution 0.127 0.341 0.064 0.370 sum -9.755 -16.865 7.783 20.980 Atomic orbital electron populations 1.69902 1.05663 1.26756 1.49192 1.25061 0.94877 0.99202 0.94918 0.86611 0.79805 0.83624 0.78056 1.20732 1.21201 1.19953 1.21066 0.92849 0.90143 1.51945 0.92432 1.18905 0.92632 0.92173 0.94338 0.95391 1.21611 0.98543 0.94105 1.00481 1.21946 0.98603 0.99111 0.97524 1.21474 0.93347 0.87547 0.98443 1.47788 1.03585 1.08796 1.75777 1.15974 0.82568 0.83260 0.78056 1.90930 1.60320 1.36609 1.57965 1.45396 1.08606 1.07351 1.79840 1.20741 0.81065 0.97458 0.95247 1.21806 0.95249 0.96836 1.02355 1.21396 0.95977 1.03722 0.92697 1.21168 0.87606 1.01587 0.99516 1.23634 0.92475 0.71562 0.79816 1.90727 1.60214 1.44947 1.44475 1.84553 1.31563 1.84534 1.32142 1.21504 0.96837 0.94038 1.02158 1.21962 0.94510 1.03324 0.96897 1.22079 0.98375 0.80642 0.98087 0.92686 0.93231 0.93111 0.92390 0.92214 0.92262 0.92179 0.77495 0.89197 0.91281 0.90465 0.90593 0.90418 0.87218 0.73307 0.90911 0.90320 0.91639 0.90391 0.85874 0.94357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.81 11.39 55.43 0.63 -25.18 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.16 8.56 -34.44 -0.29 -14.45 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.96 2.24 -91.88 -0.21 0.75 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.17 5.11 -26.69 -0.14 -2.30 16 12 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 13 C 0.12 1.75 6.39 -3.71 -0.02 1.72 16 14 N -0.62 -12.37 2.98 -178.76 -0.53 -12.90 16 15 C 0.70 13.94 8.26 -86.92 -0.72 13.23 16 16 O -0.58 -14.37 15.39 5.28 0.08 -14.29 16 17 N -0.75 -10.63 4.99 -58.68 -0.29 -10.92 16 18 C 0.16 1.95 2.50 -67.93 -0.17 1.78 16 19 C -0.12 -1.08 5.39 -26.73 -0.14 -1.22 16 20 C -0.10 -0.86 4.49 -26.73 -0.12 -0.98 16 21 C -0.08 -0.64 2.63 -91.77 -0.24 -0.88 16 22 C 0.48 4.44 7.63 36.01 0.27 4.71 16 23 O -0.52 -6.32 16.74 -18.75 -0.31 -6.64 16 24 O -0.52 -3.60 13.33 -39.25 -0.52 -4.12 16 25 C -0.11 -0.97 5.13 -26.73 -0.14 -1.11 16 26 C -0.13 -1.39 5.49 -26.73 -0.15 -1.53 16 27 C 0.13 3.13 5.39 -3.94 -0.02 3.11 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.70 5.64 -51.93 -0.29 0.40 16 35 H 0.39 4.39 6.09 -40.82 -0.25 4.14 16 36 H 0.09 1.36 7.51 -51.93 -0.39 0.97 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 40 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 41 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.41 1.22 9.10 45.56 0.41 1.64 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.12 3.53 5.10 -51.92 -0.27 3.26 16 48 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 375.93 15.07 5.67 5.67 Total: -1.00 -34.51 375.93 -9.73 -44.24 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.08 Total: 5.62 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -2.34 Total: 2.19 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.19 Total: -49.00 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.76 Total: -25.04 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.51 -9.73 -44.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605475.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.874 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds