Wall clock time and date at job start Tue Mar 31 2020 13:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00210 * 2 1 4 4 H 1.48496 * 109.46974 * 269.99832 * 3 2 1 5 5 H 1.48500 * 109.47095 * 29.99722 * 3 2 1 6 6 H 1.48498 * 109.46914 * 149.99868 * 3 2 1 7 7 C 1.37878 * 119.99491 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00163 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.49610 * 59.93926 * 9 7 2 11 11 C 1.53041 * 109.49615 * 180.02562 * 9 7 2 12 12 C 1.53040 * 109.53792 * 181.31758 * 11 9 7 13 13 C 1.53192 * 109.31340 * 298.63286 * 12 11 9 14 14 N 1.46923 * 108.77180 * 54.63452 * 13 12 11 15 15 C 1.34780 * 120.62755 * 126.37432 * 14 13 12 16 16 O 1.21595 * 119.99640 * 185.22532 * 15 14 13 17 17 N 1.34773 * 120.00479 * 5.21882 * 15 14 13 18 18 C 1.46493 * 120.00373 * 175.01708 * 17 15 14 19 19 C 1.53000 * 109.47398 * 154.99945 * 18 17 15 20 20 C 1.52994 * 109.47440 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.47389 * 300.00474 * 20 19 18 22 22 C 1.50701 * 109.47337 * 179.97438 * 21 20 19 23 23 O 1.20830 * 119.99776 * 359.72544 * 22 21 20 24 24 O 1.34228 * 120.00095 * 179.97438 * 22 21 20 25 25 C 1.53000 * 109.47217 * 59.99389 * 21 20 19 26 26 C 1.52994 * 109.47115 * 300.00383 * 25 21 20 27 27 C 1.46924 * 118.74053 * 306.64251 * 14 13 12 28 28 H 0.97005 * 120.00224 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46128 * 61.29440 * 11 9 7 30 30 H 1.09000 * 109.45635 * 301.33617 * 11 9 7 31 31 H 1.09000 * 109.49544 * 178.67760 * 12 11 9 32 32 H 1.09007 * 109.49848 * 58.58768 * 12 11 9 33 33 H 1.09002 * 109.58343 * 294.84733 * 13 12 11 34 34 H 1.08998 * 109.70413 * 174.48972 * 13 12 11 35 35 H 0.97010 * 119.99460 * 355.01743 * 17 15 14 36 36 H 1.08999 * 109.47351 * 34.99745 * 18 17 15 37 37 H 1.09002 * 109.46850 * 60.00108 * 19 18 17 38 38 H 1.08995 * 109.47301 * 300.00444 * 19 18 17 39 39 H 1.09005 * 109.47671 * 180.02562 * 20 19 18 40 40 H 1.08999 * 109.46992 * 59.99994 * 20 19 18 41 41 H 1.08999 * 109.46662 * 299.99722 * 21 20 19 42 42 H 0.96700 * 117.00155 * 179.72922 * 24 22 21 43 43 H 1.08999 * 109.47033 * 60.00560 * 25 21 20 44 44 H 1.08995 * 109.46847 * 180.02562 * 25 21 20 45 45 H 1.09002 * 109.46995 * 299.99585 * 26 25 21 46 46 H 1.09000 * 109.46956 * 179.97438 * 26 25 21 47 47 H 1.09008 * 109.58621 * 173.14630 * 27 14 13 48 48 H 1.09001 * 109.58850 * 293.56997 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6229 -2.5566 -0.8896 11 6 2.2448 -3.6629 -0.0005 12 6 1.4808 -4.9885 -0.0337 13 6 0.6055 -5.1003 1.2186 14 7 -0.2530 -3.9110 1.3031 15 6 -1.5894 -4.0360 1.4248 16 8 -2.2974 -3.0478 1.3982 17 7 -2.1412 -5.2564 1.5758 18 6 -3.5803 -5.3848 1.8172 19 6 -4.0560 -6.7602 1.3451 20 6 -5.5589 -6.8947 1.5978 21 6 -5.8399 -6.7438 3.0942 22 6 -7.3204 -6.8756 3.3431 23 8 -8.0740 -7.0653 2.4179 24 8 -7.8024 -6.7773 4.5920 25 6 -5.3643 -5.3684 3.5664 26 6 -3.8614 -5.2341 3.3136 27 6 0.3725 -2.5827 1.2465 28 1 -0.4851 0.8401 0.0004 29 1 2.8560 -3.6184 0.9009 30 1 2.8870 -3.5918 -0.8784 31 1 2.1895 -5.8163 -0.0574 32 1 0.8505 -5.0231 -0.9224 33 1 1.2394 -5.1571 2.1035 34 1 -0.0144 -5.9946 1.1550 35 1 -1.5852 -6.0497 1.5245 36 1 -4.1118 -4.6081 1.2674 37 1 -3.5245 -7.5369 1.8950 38 1 -3.8554 -6.8679 0.2792 39 1 -5.8977 -7.8747 1.2619 40 1 -6.0906 -6.1179 1.0483 41 1 -5.3082 -7.5205 3.6438 42 1 -8.7592 -6.8646 4.7015 43 1 -5.8960 -4.5917 3.0168 44 1 -5.5641 -5.2612 4.6325 45 1 -3.3297 -6.0108 3.8633 46 1 -3.5226 -4.2540 3.6496 47 1 -0.4011 -1.8162 1.1988 48 1 0.9869 -2.4300 2.1337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594605475.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:39 Heat of formation + Delta-G solvation = -165.058551 kcal Electronic energy + Delta-G solvation = -28399.097142 eV Core-core repulsion = 24451.826505 eV Total energy + Delta-G solvation = -3947.270637 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.68769 -41.19910 -39.32529 -38.14097 -37.09061 -35.55284 -34.88766 -33.38061 -31.81980 -31.58373 -30.61858 -27.03416 -26.27010 -24.81821 -23.77418 -23.41213 -22.25765 -21.51376 -21.00327 -20.14321 -19.08192 -18.90292 -18.21686 -17.76059 -17.31841 -16.83528 -16.63143 -16.20561 -15.83403 -15.31620 -15.17011 -15.12254 -14.90139 -14.57067 -14.53625 -14.23371 -13.99104 -13.94501 -13.52336 -13.39697 -13.21998 -12.88186 -12.72838 -12.57790 -12.53306 -12.34181 -12.24536 -12.19142 -12.13205 -11.80980 -11.61847 -11.51618 -11.44760 -11.27981 -11.14851 -10.92136 -10.78335 -10.49674 -10.04678 -9.21139 -8.08243 -6.26053 1.20157 1.40815 1.41810 1.52697 1.82741 2.16095 2.30742 2.42925 3.08515 3.21579 3.58072 3.64892 3.95792 3.99692 4.08891 4.17281 4.19563 4.31626 4.35505 4.39863 4.48001 4.54114 4.63239 4.67486 4.79065 4.84611 4.85241 4.88613 4.99587 5.07456 5.13453 5.15118 5.17757 5.27889 5.29711 5.32828 5.35386 5.40940 5.58216 5.63488 5.69539 5.70832 5.93013 6.02220 6.23149 6.39118 6.87800 7.00724 7.22135 7.43990 7.77211 8.94518 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.021026 B = 0.002638 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.385555 B =10609.650112 C =11478.143059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.008 3.992 3 Si 0.957 3.043 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.037 3.963 10 H -0.018 1.018 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.110 3.890 14 N -0.628 5.628 15 C 0.693 3.307 16 O -0.641 6.641 17 N -0.728 5.728 18 C 0.155 3.845 19 C -0.111 4.111 20 C -0.098 4.098 21 C -0.074 4.074 22 C 0.488 3.512 23 O -0.552 6.552 24 O -0.511 6.511 25 C -0.101 4.101 26 C -0.120 4.120 27 C 0.144 3.856 28 H 0.258 0.742 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.105 0.895 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.409 0.591 36 H 0.048 0.952 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.143 0.857 42 H 0.426 0.574 43 H 0.050 0.950 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.040 0.960 47 H 0.074 0.926 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.055 -21.621 9.376 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.191 4.191 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.018 3.982 10 H 0.000 1.000 11 C -0.143 4.143 12 C -0.164 4.164 13 C -0.012 4.012 14 N -0.364 5.364 15 C 0.394 3.606 16 O -0.523 6.523 17 N -0.387 5.387 18 C 0.050 3.950 19 C -0.148 4.148 20 C -0.136 4.136 21 C -0.093 4.093 22 C 0.332 3.668 23 O -0.443 6.443 24 O -0.325 6.325 25 C -0.139 4.139 26 C -0.159 4.159 27 C 0.021 3.979 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.123 0.877 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.248 0.752 36 H 0.067 0.933 37 H 0.123 0.877 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.071 0.929 41 H 0.161 0.839 42 H 0.287 0.713 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.113 0.887 46 H 0.059 0.941 47 H 0.092 0.908 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.480 -20.813 9.088 24.242 hybrid contribution -0.350 1.429 -0.336 1.509 sum -8.830 -19.383 8.752 23.028 Atomic orbital electron populations 1.70119 1.07438 1.27122 1.50624 1.25922 0.95542 1.02978 0.94706 0.85565 0.78824 0.79143 0.78201 1.20197 1.21426 1.18461 1.21526 0.93276 0.91518 1.51052 0.91932 1.18843 0.93129 0.93837 0.92424 1.00006 1.21503 0.97620 0.94277 1.00865 1.21910 0.99015 0.98128 0.97372 1.21861 0.93587 0.86739 0.98974 1.47676 1.04201 1.08816 1.75719 1.16246 0.82362 0.84196 0.77793 1.90893 1.61756 1.39197 1.60415 1.45142 1.09561 1.05828 1.78137 1.20920 0.79331 0.98718 0.96005 1.21730 0.95393 0.94907 1.02811 1.21357 0.95599 1.03543 0.93075 1.21172 0.87351 1.01450 0.99333 1.23776 0.92681 0.70534 0.79845 1.90723 1.61127 1.46836 1.45631 1.84511 1.33317 1.83834 1.30796 1.21410 0.95317 0.94443 1.02710 1.21858 0.95966 1.02223 0.95847 1.21439 0.96753 0.82237 0.97514 0.93273 0.92326 0.93176 0.87672 0.93437 0.90155 0.87863 0.75197 0.93337 0.87711 0.90436 0.89294 0.92861 0.83924 0.71268 0.93076 0.88974 0.88665 0.94117 0.90814 0.94804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.94 11.39 21.45 0.24 -56.70 16 2 C 0.01 0.45 5.30 84.65 0.45 0.90 16 3 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.54 -29.86 8.56 25.60 0.22 -29.64 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.04 1.90 2.24 -11.61 -0.03 1.87 16 10 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 11 C -0.10 -4.03 5.11 30.62 0.16 -3.87 16 12 C -0.13 -3.60 6.08 30.67 0.19 -3.41 16 13 C 0.11 2.96 6.39 86.36 0.55 3.51 16 14 N -0.63 -25.03 2.98 -837.74 -2.49 -27.53 16 15 C 0.69 28.31 8.26 179.05 1.48 29.79 16 16 O -0.64 -34.05 15.39 -4.01 -0.06 -34.12 16 17 N -0.73 -19.64 4.99 -457.82 -2.28 -21.92 16 18 C 0.16 3.70 2.50 44.99 0.11 3.81 16 19 C -0.11 -1.62 5.39 30.59 0.16 -1.45 16 20 C -0.10 -1.51 4.49 30.59 0.14 -1.37 16 21 C -0.07 -1.01 2.63 -11.54 -0.03 -1.04 16 22 C 0.49 8.12 7.63 71.24 0.54 8.67 16 23 O -0.55 -13.12 16.74 21.95 0.37 -12.75 16 24 O -0.51 -5.97 13.33 -51.40 -0.68 -6.66 16 25 C -0.10 -1.73 5.13 30.59 0.16 -1.57 16 26 C -0.12 -2.49 5.49 30.59 0.17 -2.33 16 27 C 0.14 7.28 5.39 86.22 0.46 7.75 16 28 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 29 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.10 1.87 5.64 -2.39 -0.01 1.86 16 35 H 0.41 7.68 6.09 -92.70 -0.56 7.11 16 36 H 0.05 1.58 7.51 -2.39 -0.02 1.56 16 37 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 1.20 8.10 -2.38 -0.02 1.19 16 40 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 41 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.43 1.69 9.10 -74.06 -0.67 1.02 16 43 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.09 1.36 8.11 -2.39 -0.02 1.34 16 45 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 46 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.07 4.53 5.10 -2.38 -0.01 4.52 16 48 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -83.84 375.93 1.58 -82.26 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -0.27 Total: 18.85 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 4.73 Total: 11.62 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -4.53 Total: -106.15 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -0.38 Total: -53.52 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -83.84 1.58 -82.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605475.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.797 kcal (2) G-P(sol) polarization free energy of solvation -83.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds