Wall clock time and date at job start Tue Mar 31 2020 13:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99937 * 2 1 4 4 H 1.48506 * 109.46806 * 239.99733 * 3 2 1 5 5 H 1.48500 * 109.47128 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47638 * 119.99523 * 3 2 1 7 7 C 1.37873 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00541 * 182.98446 * 7 2 1 9 9 C 1.50703 * 119.99802 * 2.97808 * 7 2 1 10 10 C 1.52997 * 115.55331 * 324.65559 * 9 7 2 11 11 N 1.46501 * 109.46823 * 305.45259 * 10 9 7 12 12 C 1.34782 * 119.99873 * 184.93003 * 11 10 9 13 13 O 1.21584 * 119.99727 * 355.36405 * 12 11 10 14 14 N 1.34772 * 119.99698 * 175.63659 * 12 11 10 15 15 C 1.46924 * 120.63496 * 4.41053 * 14 12 11 16 16 C 1.52759 * 109.00850 * 233.58383 * 15 14 12 17 17 C 1.53043 * 109.38452 * 305.58341 * 16 15 14 18 18 C 1.53041 * 109.53498 * 61.23868 * 17 16 15 19 19 H 1.08996 * 109.49786 * 58.59018 * 18 17 16 20 20 C 1.53004 * 109.52339 * 178.66966 * 18 17 16 21 21 C 1.52992 * 109.47183 * 184.85376 * 20 18 17 22 22 C 1.50698 * 109.47230 * 180.02562 * 21 20 18 23 23 O 1.20824 * 119.99754 * 0.02562 * 22 21 20 24 24 O 1.34227 * 119.99964 * 180.02562 * 22 21 20 25 25 C 1.46924 * 120.63046 * 184.68572 * 14 12 11 26 26 C 1.53005 * 117.49383 * 110.32201 * 9 7 2 27 27 C 1.52997 * 117.49888 * 178.97771 * 9 7 2 28 28 H 0.97003 * 120.00593 * 5.01141 * 1 2 3 29 29 H 1.08993 * 109.47380 * 185.45571 * 10 9 7 30 30 H 1.08999 * 109.47282 * 65.44730 * 10 9 7 31 31 H 0.96997 * 120.00136 * 4.93299 * 11 10 9 32 32 H 1.09003 * 109.58629 * 353.41414 * 15 14 12 33 33 H 1.08996 * 109.59302 * 113.83687 * 15 14 12 34 34 H 1.09000 * 109.56742 * 185.54774 * 16 15 14 35 35 H 1.08998 * 109.38840 * 65.51174 * 16 15 14 36 36 H 1.08997 * 109.45453 * 301.22102 * 17 16 15 37 37 H 1.08994 * 109.44959 * 181.25381 * 17 16 15 38 38 H 1.08997 * 109.47057 * 304.85609 * 20 18 17 39 39 H 1.09004 * 109.46748 * 64.85377 * 20 18 17 40 40 H 1.08997 * 109.47314 * 300.00075 * 21 20 18 41 41 H 1.09008 * 109.47195 * 59.99817 * 21 20 18 42 42 H 0.96704 * 117.00096 * 179.97438 * 24 22 21 43 43 H 1.09001 * 109.58705 * 246.15825 * 25 14 12 44 44 H 1.09004 * 109.58580 * 6.57868 * 25 14 12 45 45 H 1.09007 * 117.49561 * 215.00460 * 26 9 7 46 46 H 1.08996 * 117.50153 * 0.02562 * 26 9 7 47 47 H 1.08997 * 117.50039 * 359.97438 * 27 9 7 48 48 H 1.09003 * 117.49721 * 144.97588 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0834 -1.1946 0.0492 9 6 1.2526 -2.4983 -0.0667 10 6 -0.0871 -2.5265 0.6718 11 7 0.1151 -2.1231 2.0656 12 6 -0.9126 -2.1693 2.9364 13 8 -2.0261 -2.4645 2.5474 14 7 -0.7070 -1.8829 4.2372 15 6 0.6088 -1.4256 4.7042 16 6 1.0662 -2.3191 5.8557 17 6 -0.0130 -2.3419 6.9405 18 6 -1.3071 -2.9198 6.3630 19 1 -1.1204 -3.9258 5.9873 20 6 -2.3760 -2.9732 7.4565 21 6 -3.6290 -3.6614 6.9116 22 6 -4.6820 -3.7134 7.9884 23 8 -4.4538 -3.2474 9.0795 24 8 -5.8734 -4.2775 7.7353 25 6 -1.7929 -2.0277 5.2163 26 6 1.3653 -3.3129 -1.3569 27 6 2.0755 -3.7879 -0.0868 28 1 -0.4851 0.8368 -0.0734 29 1 -0.4974 -3.5358 0.6416 30 1 -0.7815 -1.8374 0.1913 31 1 0.9886 -1.8228 2.3617 32 1 1.3282 -1.4875 3.8876 33 1 0.5355 -0.3952 5.0518 34 1 1.9942 -1.9293 6.2739 35 1 1.2310 -3.3309 5.4852 36 1 -0.1944 -1.3267 7.2935 37 1 0.3217 -2.9613 7.7725 38 1 -1.9951 -3.5344 8.3097 39 1 -2.6255 -1.9596 7.7704 40 1 -4.0099 -3.1002 6.0583 41 1 -3.3794 -4.6750 6.5976 42 1 -6.5166 -4.2877 8.4573 43 1 -2.0661 -1.0473 5.6065 44 1 -2.6578 -2.4867 4.7374 45 1 0.4850 -3.8690 -1.6795 46 1 1.9837 -2.9058 -2.1568 47 1 3.1608 -3.6930 -0.0519 48 1 1.6627 -4.6564 0.4265 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594605558.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:53 Heat of formation + Delta-G solvation = -125.189721 kcal Electronic energy + Delta-G solvation = -28466.607540 eV Core-core repulsion = 24521.065746 eV Total energy + Delta-G solvation = -3945.541795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.43009 -41.08540 -39.11526 -38.22705 -37.14627 -35.64246 -34.54908 -34.06005 -33.13816 -30.88493 -28.03871 -27.36730 -26.23157 -25.51403 -23.34883 -22.94565 -21.75722 -21.22149 -21.09276 -20.24915 -19.23167 -18.97138 -17.95290 -17.44062 -17.30195 -16.87992 -16.74257 -16.23899 -15.79691 -15.67799 -15.29841 -15.01852 -14.78348 -14.47397 -14.30904 -14.22226 -14.12365 -13.81757 -13.50275 -13.34182 -13.16577 -12.88032 -12.75209 -12.58541 -12.52729 -12.28494 -12.21169 -12.02295 -11.90499 -11.74019 -11.59552 -11.52218 -11.48000 -11.24389 -10.96477 -10.81638 -10.65637 -10.13922 -9.81856 -9.19616 -7.90579 -6.17815 1.22473 1.44632 1.48045 1.54286 1.92120 2.19094 2.40268 2.44406 3.01812 3.32824 3.66607 3.72479 3.84727 3.87106 4.08752 4.13603 4.26541 4.28942 4.31053 4.44446 4.56472 4.58420 4.63780 4.69998 4.80744 4.83255 4.84167 4.89345 4.94829 4.97828 5.00462 5.09726 5.13244 5.18125 5.27360 5.30318 5.33758 5.52927 5.55299 5.63284 5.64146 5.76420 6.00738 6.03257 6.19935 6.40903 6.84112 7.01719 7.33065 7.47393 7.86648 8.94350 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016761 B = 0.002988 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.114148 B = 9369.832306 C = 9775.722148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.036 3.964 3 Si 0.948 3.052 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.506 4.506 8 H 0.059 0.941 9 C 0.009 3.991 10 C 0.196 3.804 11 N -0.699 5.699 12 C 0.695 3.305 13 O -0.649 6.649 14 N -0.631 5.631 15 C 0.105 3.895 16 C -0.126 4.126 17 C -0.108 4.108 18 C -0.091 4.091 19 H 0.073 0.927 20 C -0.089 4.089 21 C -0.121 4.121 22 C 0.486 3.514 23 O -0.551 6.551 24 O -0.518 6.518 25 C 0.129 3.871 26 C -0.199 4.199 27 C -0.186 4.186 28 H 0.255 0.745 29 H 0.011 0.989 30 H 0.073 0.927 31 H 0.399 0.601 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.426 0.574 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 -6.011 17.062 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.166 4.166 3 Si 0.774 3.226 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.189 1.189 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.009 3.991 10 C 0.071 3.929 11 N -0.352 5.352 12 C 0.397 3.603 13 O -0.533 6.533 14 N -0.368 5.368 15 C -0.018 4.018 16 C -0.164 4.164 17 C -0.145 4.145 18 C -0.110 4.110 19 H 0.092 0.908 20 C -0.127 4.127 21 C -0.159 4.159 22 C 0.330 3.670 23 O -0.442 6.442 24 O -0.331 6.331 25 C 0.006 3.994 26 C -0.238 4.238 27 C -0.223 4.223 28 H 0.065 0.935 29 H 0.029 0.971 30 H 0.091 0.909 31 H 0.236 0.764 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.127 0.873 41 H 0.139 0.861 42 H 0.288 0.712 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.103 0.897 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.741 -5.964 16.791 18.028 hybrid contribution 0.089 1.096 -0.080 1.102 sum -2.652 -4.868 16.710 17.606 Atomic orbital electron populations 1.70086 1.06802 1.26729 1.48859 1.25602 0.95326 1.01627 0.94053 0.85774 0.78298 0.79532 0.78958 1.20275 1.22036 1.18882 1.20673 0.92489 0.89517 1.51615 0.92244 1.19270 0.93457 0.90564 0.95843 1.20558 0.97258 0.94912 0.80142 1.44874 1.11535 1.69072 1.09671 1.16111 0.84214 0.78412 0.81592 1.90769 1.24321 1.59578 1.78625 1.47228 1.13443 1.71087 1.05063 1.21700 0.83313 0.98765 0.97977 1.21806 0.99616 0.99880 0.95104 1.21533 0.93204 1.02108 0.97687 1.21474 0.95862 0.99531 0.94170 0.90826 1.21325 0.92209 1.01703 0.97511 1.21562 0.92290 1.05832 0.96170 1.23768 0.82347 0.72398 0.88439 1.90706 1.80673 1.45740 1.27095 1.84542 1.25831 1.73674 1.49095 1.21640 0.89396 0.99932 0.88425 1.22961 1.02042 1.06272 0.92530 1.22928 0.98418 0.98974 1.01996 0.93475 0.97119 0.90910 0.76389 0.91203 0.90951 0.88526 0.92072 0.91004 0.89729 0.89925 0.91023 0.87293 0.86145 0.71240 0.91493 0.90764 0.90741 0.90343 0.89671 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.11 10.17 21.44 0.22 -47.89 16 2 C 0.04 1.81 5.31 84.65 0.45 2.26 16 3 Si 0.95 40.55 29.54 68.60 2.03 42.58 16 4 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.51 -25.16 8.31 25.60 0.21 -24.95 16 8 H 0.06 2.91 7.81 -2.91 -0.02 2.88 16 9 C 0.01 0.44 2.06 -52.93 -0.11 0.33 16 10 C 0.20 9.59 4.61 86.38 0.40 9.99 16 11 N -0.70 -30.92 5.07 -478.54 -2.43 -33.35 16 12 C 0.70 30.13 8.30 179.05 1.49 31.62 16 13 O -0.65 -32.96 15.78 -3.98 -0.06 -33.03 16 14 N -0.63 -20.53 2.98 -837.76 -2.49 -23.03 16 15 C 0.11 2.74 6.40 86.22 0.55 3.29 16 16 C -0.13 -2.35 6.06 30.53 0.19 -2.16 16 17 C -0.11 -1.72 5.17 30.62 0.16 -1.56 16 18 C -0.09 -1.70 2.34 -10.71 -0.03 -1.73 16 19 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 20 C -0.09 -1.45 3.98 30.59 0.12 -1.32 16 21 C -0.12 -1.96 5.57 29.84 0.17 -1.79 16 22 C 0.49 8.87 8.33 71.24 0.59 9.46 16 23 O -0.55 -13.19 16.74 21.97 0.37 -12.82 16 24 O -0.52 -7.44 13.42 -51.39 -0.69 -8.13 16 25 C 0.13 3.39 5.31 86.36 0.46 3.85 16 26 C -0.20 -8.53 9.96 30.62 0.30 -8.23 16 27 C -0.19 -7.40 9.92 30.62 0.30 -7.09 16 28 H 0.26 13.73 8.32 -92.71 -0.77 12.96 16 29 H 0.01 0.52 8.09 -2.39 -0.02 0.50 16 30 H 0.07 4.15 5.90 -2.39 -0.01 4.14 16 31 H 0.40 16.73 5.39 -92.71 -0.50 16.23 16 32 H 0.07 2.02 5.57 -2.39 -0.01 2.01 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.25 8.10 -2.39 -0.02 1.24 16 39 H 0.07 1.23 8.10 -2.38 -0.02 1.21 16 40 H 0.11 1.87 6.70 -2.39 -0.02 1.85 16 41 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.43 2.49 9.10 -74.05 -0.67 1.81 16 43 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.07 2.23 5.75 -2.38 -0.01 2.22 16 45 H 0.07 3.04 8.14 -2.38 -0.02 3.02 16 46 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 47 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 48 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -68.20 383.20 2.00 -66.20 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: -0.20 Total: 37.50 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 5.26 Total: 11.96 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -4.70 Total: -104.27 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: -0.38 Total: -53.98 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -68.20 2.00 -66.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605558.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.991 kcal (2) G-P(sol) polarization free energy of solvation -68.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds