Wall clock time and date at job start Tue Mar 31 2020 13:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 120.00030 * 2 1 4 4 H 1.48493 * 109.46940 * 266.77955 * 3 2 1 5 5 H 1.48494 * 109.47132 * 26.78262 * 3 2 1 6 6 H 1.48498 * 109.46879 * 146.78227 * 3 2 1 7 7 C 1.37872 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00128 * 356.69459 * 7 2 1 9 9 C 1.50698 * 120.00008 * 176.69364 * 7 2 1 10 10 C 1.53005 * 115.56160 * 299.63313 * 9 7 2 11 11 N 1.46897 * 109.46942 * 320.35125 * 10 9 7 12 12 C 1.46952 * 111.00491 * 288.89731 * 11 10 9 13 13 C 1.53043 * 109.36641 * 176.81138 * 12 11 10 14 14 N 1.46956 * 109.36624 * 58.40359 * 13 12 11 15 15 C 1.46902 * 111.00292 * 176.81372 * 14 13 12 16 16 C 1.50700 * 110.45203 * 305.99744 * 15 14 13 17 17 O 1.20828 * 119.99975 * 144.67795 * 16 15 14 18 18 O 1.34228 * 120.00272 * 324.67472 * 16 15 14 19 19 C 1.54508 * 110.51193 * 183.39346 * 15 14 13 20 20 C 1.54474 * 104.06187 * 241.35289 * 19 15 14 21 21 O 1.44425 * 104.80517 * 23.97532 * 20 19 15 22 22 C 1.44778 * 105.29745 * 319.45683 * 21 20 19 23 23 C 1.46962 * 110.87828 * 300.67712 * 14 13 12 24 24 C 1.46957 * 110.99868 * 165.09514 * 11 10 9 25 25 C 1.52995 * 117.50076 * 85.32113 * 9 7 2 26 26 C 1.52998 * 60.00376 * 107.49156 * 25 9 7 27 27 H 0.97004 * 119.99460 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47013 * 80.35235 * 10 9 7 29 29 H 1.08999 * 109.47206 * 200.35296 * 10 9 7 30 30 H 1.09004 * 109.48727 * 296.78035 * 12 11 10 31 31 H 1.09005 * 109.48825 * 56.84035 * 12 11 10 32 32 H 1.09004 * 109.49376 * 298.43434 * 13 12 11 33 33 H 1.09003 * 109.50887 * 178.38279 * 13 12 11 34 34 H 0.96697 * 116.99789 * 180.02562 * 18 16 15 35 35 H 1.08999 * 110.51090 * 359.97438 * 19 15 14 36 36 H 1.09000 * 110.51156 * 122.70660 * 19 15 14 37 37 H 1.08994 * 110.37565 * 142.81015 * 20 19 15 38 38 H 1.09008 * 110.37221 * 265.14948 * 20 19 15 39 39 H 1.09004 * 110.42490 * 281.77802 * 22 21 20 40 40 H 1.08998 * 110.49172 * 159.32060 * 22 21 20 41 41 H 1.09004 * 109.48925 * 299.35288 * 23 14 13 42 42 H 1.08999 * 109.50518 * 179.29687 * 23 14 13 43 43 H 1.08998 * 109.49291 * 303.16122 * 24 11 10 44 44 H 1.08998 * 109.48721 * 63.20230 * 24 11 10 45 45 H 1.09002 * 117.49657 * 359.97438 * 25 9 7 46 46 H 1.09007 * 117.50370 * 214.98014 * 25 9 7 47 47 H 1.08994 * 117.49862 * 107.48995 * 26 25 9 48 48 H 1.08997 * 117.49607 * 252.51423 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5648 2.0071 -1.3978 5 1 1.4144 2.6714 0.6309 6 1 3.5111 1.4608 0.7670 7 6 2.0045 -1.1940 0.0005 8 1 1.4658 -2.1285 0.0549 9 6 3.5096 -1.1952 -0.0747 10 6 4.1086 -0.5487 -1.3254 11 7 3.2980 -0.9060 -2.4973 12 6 3.4739 -2.3223 -2.8475 13 6 2.5551 -2.6730 -4.0201 14 7 2.8731 -1.8072 -5.1642 15 6 2.0625 -2.1644 -6.3361 16 6 2.2104 -3.6305 -6.6517 17 8 1.2673 -4.2552 -7.0764 18 8 3.3898 -4.2425 -6.4611 19 6 2.4651 -1.3048 -7.5552 20 6 1.1772 -0.5288 -7.9091 21 8 0.4176 -0.4948 -6.6812 22 6 0.5783 -1.8094 -6.0962 23 6 2.6971 -0.3908 -4.8141 24 6 3.6160 -0.0401 -3.6413 25 6 4.2827 -1.0455 1.2370 26 6 4.2458 -2.3970 0.5208 27 1 -0.4849 0.8401 -0.0004 28 1 4.1168 0.5347 -1.2059 29 1 5.1285 -0.9065 -1.4664 30 1 4.5110 -2.5004 -3.1321 31 1 3.2204 -2.9435 -1.9884 32 1 1.5165 -2.5208 -3.7266 33 1 2.7047 -3.7157 -4.3005 34 1 3.4361 -5.1836 -6.6781 35 1 3.2653 -0.6146 -7.2883 36 1 2.7688 -1.9404 -8.3871 37 1 1.4206 0.4831 -8.2328 38 1 0.6197 -1.0527 -8.6857 39 1 -0.0696 -2.5298 -6.5956 40 1 0.3630 -1.7806 -5.0281 41 1 1.6601 -0.2127 -4.5295 42 1 2.9504 0.2306 -5.6730 43 1 3.4661 1.0025 -3.3611 44 1 4.6547 -0.1920 -3.9347 45 1 3.7026 -0.9458 2.1545 46 1 5.2180 -0.4864 1.2091 47 1 5.1568 -2.7270 0.0217 48 1 3.6415 -3.1868 0.9671 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:02 Heat of formation + Delta-G solvation = -68.609704 kcal Electronic energy + Delta-G solvation = -30318.490199 eV Core-core repulsion = 26375.401898 eV Total energy + Delta-G solvation = -3943.088301 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.40906 -39.38504 -38.37550 -36.73318 -36.24667 -34.45189 -31.92673 -31.57395 -30.60264 -29.29242 -26.99995 -25.45234 -24.74094 -23.73070 -23.06340 -22.27127 -21.39307 -20.40389 -19.17637 -18.82618 -18.28692 -17.40739 -16.85183 -16.26490 -15.72141 -15.64047 -15.28846 -15.03735 -14.73570 -14.45321 -14.31570 -14.06655 -13.91346 -13.49872 -13.28887 -12.83763 -12.58766 -12.42752 -12.28190 -12.03824 -11.92830 -11.76931 -11.70016 -11.46284 -11.41837 -10.96051 -10.87713 -10.85989 -10.62223 -10.52973 -10.49288 -10.13258 -9.97457 -9.93394 -9.41117 -8.96728 -8.49971 -8.30417 -8.27074 -7.45344 -5.92445 -3.88718 1.91047 2.73519 3.39031 3.47662 3.50510 3.55546 3.84833 4.24011 4.44076 4.50183 4.58381 4.75404 4.87968 4.96923 5.01670 5.13538 5.34728 5.38966 5.40367 5.47139 5.49483 5.57509 5.60856 5.67529 5.68807 5.80477 5.86052 5.94593 5.99031 6.12687 6.20227 6.22122 6.25023 6.29828 6.40527 6.45586 6.49663 6.51950 6.66140 6.76942 6.90101 7.03079 7.08350 7.18298 7.71081 7.74244 7.85160 7.99231 8.65875 9.07525 9.74187 11.20493 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016094 B = 0.004583 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.403008 B = 6108.135142 C = 6801.228231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.091 3.909 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.302 1.302 6 H -0.263 1.263 7 C -0.453 4.453 8 H 0.071 0.929 9 C 0.009 3.991 10 C 0.091 3.909 11 N -0.502 5.502 12 C 0.076 3.924 13 C 0.049 3.951 14 N -0.510 5.510 15 C 0.088 3.912 16 C 0.504 3.496 17 O -0.514 6.514 18 O -0.494 6.494 19 C -0.138 4.138 20 C 0.042 3.958 21 O -0.358 6.358 22 C 0.023 3.977 23 C 0.058 3.942 24 C 0.056 3.944 25 C -0.199 4.199 26 C -0.189 4.189 27 H 0.260 0.740 28 H 0.059 0.941 29 H 0.015 0.985 30 H 0.028 0.972 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.406 0.594 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.031 0.969 45 H 0.085 0.915 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.978 -3.717 -15.529 17.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.110 4.110 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.229 1.229 6 H -0.188 1.188 7 C -0.490 4.490 8 H 0.089 0.911 9 C 0.007 3.993 10 C -0.036 4.036 11 N -0.226 5.226 12 C -0.052 4.052 13 C -0.078 4.078 14 N -0.236 5.236 15 C -0.005 4.005 16 C 0.346 3.654 17 O -0.402 6.402 18 O -0.304 6.304 19 C -0.176 4.176 20 C -0.035 4.035 21 O -0.276 6.276 22 C -0.055 4.055 23 C -0.069 4.069 24 C -0.073 4.073 25 C -0.237 4.237 26 C -0.226 4.226 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.264 0.736 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.117 0.883 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.128 0.872 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.049 0.951 45 H 0.104 0.896 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.415 -3.175 -15.459 17.436 hybrid contribution 0.654 0.107 -0.233 0.702 sum 8.068 -3.068 -15.692 17.909 Atomic orbital electron populations 1.69889 1.06327 1.26602 1.51307 1.24704 0.94181 0.98455 0.93704 0.86994 0.80375 0.84014 0.78127 1.20392 1.22915 1.18757 1.19969 0.85849 0.94031 1.49147 0.91118 1.19438 0.95217 0.96185 0.88433 1.21769 0.91890 0.99015 0.90953 1.61887 1.55604 1.02080 1.02994 1.21939 0.96160 0.90689 0.96435 1.22360 0.99831 0.95765 0.89839 1.62540 1.51907 1.05147 1.04022 1.22253 0.94675 0.88419 0.95114 1.22816 0.79895 0.89547 0.73184 1.90732 1.40486 1.66261 1.42672 1.84689 1.36059 1.30050 1.79568 1.23053 1.00149 0.98935 0.95422 1.23484 0.90391 1.01406 0.88230 1.89288 1.71613 1.30818 1.35872 1.24181 0.93641 0.86080 1.01612 1.22236 1.00496 0.86977 0.97227 1.22163 0.96515 0.97961 0.90661 1.23057 1.01436 0.99786 0.99466 1.22820 1.01323 0.92077 1.06352 0.92994 0.92287 0.96647 0.95429 0.89036 0.92776 0.90915 0.73639 0.87890 0.89911 0.88332 0.91886 0.89875 0.87201 0.92071 0.90519 0.90647 0.95133 0.89608 0.91727 0.91420 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 2 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 3 Si 0.88 21.70 24.60 -169.99 -4.18 17.52 16 4 H -0.28 -6.68 6.95 56.52 0.39 -6.29 16 5 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 6 H -0.26 -6.22 6.28 56.52 0.35 -5.87 16 7 C -0.45 -12.16 8.76 -34.44 -0.30 -12.46 16 8 H 0.07 2.11 8.06 -52.49 -0.42 1.68 16 9 C 0.01 0.19 0.34 -155.66 -0.05 0.14 16 10 C 0.09 1.87 4.15 -3.82 -0.02 1.86 16 11 N -0.50 -9.87 3.99 -234.47 -0.94 -10.81 16 12 C 0.08 1.33 5.44 -3.77 -0.02 1.31 16 13 C 0.05 0.78 5.00 -3.77 -0.02 0.76 16 14 N -0.51 -7.24 4.38 -218.33 -0.96 -8.20 16 15 C 0.09 1.11 0.73 -131.19 -0.10 1.02 16 16 C 0.50 6.27 5.75 36.01 0.21 6.48 16 17 O -0.51 -7.41 16.34 -18.75 -0.31 -7.72 16 18 O -0.49 -5.04 12.16 -39.25 -0.48 -5.52 16 19 C -0.14 -1.39 5.84 -25.17 -0.15 -1.54 16 20 C 0.04 0.42 7.63 37.93 0.29 0.71 16 21 O -0.36 -5.02 10.69 -35.23 -0.38 -5.40 16 22 C 0.02 0.33 5.73 37.93 0.22 0.55 16 23 C 0.06 0.88 4.45 -3.76 -0.02 0.87 16 24 C 0.06 0.95 5.59 -3.77 -0.02 0.93 16 25 C -0.20 -4.16 8.81 -26.73 -0.24 -4.39 16 26 C -0.19 -3.71 9.46 -26.73 -0.25 -3.97 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.06 1.26 4.81 -51.93 -0.25 1.01 16 29 H 0.02 0.29 7.87 -51.93 -0.41 -0.12 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 1.74 7.02 -51.93 -0.36 1.38 16 32 H 0.05 0.97 6.56 -51.93 -0.34 0.63 16 33 H 0.07 1.04 6.17 -51.93 -0.32 0.72 16 34 H 0.41 2.27 9.10 45.56 0.41 2.69 16 35 H 0.10 1.01 6.46 -51.93 -0.34 0.67 16 36 H 0.08 0.72 7.73 -51.93 -0.40 0.32 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.08 1.16 6.83 -51.93 -0.35 0.81 16 40 H 0.11 1.75 5.73 -51.93 -0.30 1.45 16 41 H 0.06 1.09 6.47 -51.93 -0.34 0.75 16 42 H 0.08 1.00 6.26 -51.93 -0.32 0.68 16 43 H 0.08 1.34 7.96 -51.93 -0.41 0.92 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 46 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 47 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 48 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 LS Contribution 360.01 15.07 5.43 5.43 Total: -1.00 -31.93 360.01 -8.32 -40.25 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.72 Total: 6.25 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -0.56 Total: -5.27 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -1.12 Total: -45.53 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -1.16 Total: -18.63 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.18 Total: 17.52 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.93 -8.32 -40.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.363 kcal (2) G-P(sol) polarization free energy of solvation -31.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds