Wall clock time and date at job start Tue Mar 31 2020 13:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00129 * 2 1 4 4 H 1.48500 * 109.47356 * 269.99999 * 3 2 1 5 5 H 1.48498 * 109.47185 * 30.00537 * 3 2 1 6 6 H 1.48512 * 109.46981 * 150.00096 * 3 2 1 7 7 C 1.37881 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00055 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99916 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.50358 * 60.06426 * 9 7 2 11 11 C 1.53043 * 109.52293 * 180.14475 * 9 7 2 12 12 C 1.53043 * 109.53785 * 181.32853 * 11 9 7 13 13 C 1.53623 * 109.24582 * 298.51491 * 12 11 9 14 14 N 1.46929 * 108.54337 * 54.85378 * 13 12 11 15 15 C 1.34774 * 120.63272 * 126.37571 * 14 13 12 16 16 O 1.21585 * 120.00360 * 184.62717 * 15 14 13 17 17 N 1.34779 * 119.99907 * 4.61985 * 15 14 13 18 18 C 1.46499 * 120.00162 * 175.01931 * 17 15 14 19 19 C 1.52999 * 109.46968 * 179.97438 * 18 17 15 20 20 H 1.09004 * 109.47036 * 55.00735 * 19 18 17 21 21 C 1.53005 * 109.46803 * 175.00028 * 19 18 17 22 22 C 1.50702 * 109.47198 * 293.18909 * 21 19 18 23 23 O 1.20821 * 119.99947 * 2.89459 * 22 21 19 24 24 O 1.34222 * 119.99872 * 182.88813 * 22 21 19 25 25 C 1.52995 * 109.47676 * 295.00155 * 19 18 17 26 26 C 1.52998 * 117.51688 * 106.13304 * 25 19 18 27 27 C 1.52996 * 117.49927 * 174.76444 * 25 19 18 28 28 C 1.46933 * 118.73655 * 306.09331 * 14 13 12 29 29 H 0.97002 * 119.99629 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.46078 * 301.35188 * 11 9 7 31 31 H 1.09000 * 109.46068 * 61.31284 * 11 9 7 32 32 H 1.09010 * 109.49518 * 58.58531 * 12 11 9 33 33 H 1.08998 * 109.49833 * 178.64935 * 12 11 9 34 34 H 1.09004 * 109.73461 * 295.12116 * 13 12 11 35 35 H 1.09000 * 109.66833 * 174.54968 * 13 12 11 36 36 H 0.97006 * 119.99529 * 355.02177 * 17 15 14 37 37 H 1.08998 * 109.46615 * 60.00320 * 18 17 15 38 38 H 1.08994 * 109.47072 * 300.00121 * 18 17 15 39 39 H 1.09002 * 109.46823 * 53.18887 * 21 19 18 40 40 H 1.08992 * 109.47161 * 173.19037 * 21 19 18 41 41 H 0.96702 * 117.00144 * 180.02562 * 24 22 21 42 42 H 1.09003 * 115.54718 * 320.43593 * 25 19 18 43 43 H 1.09001 * 117.50250 * 214.97027 * 26 25 19 44 44 H 1.09000 * 117.50202 * 359.97438 * 26 25 19 45 45 H 1.09000 * 117.50030 * 359.97438 * 27 25 19 46 46 H 1.09002 * 117.49679 * 144.99838 * 27 25 19 47 47 H 1.08995 * 109.58339 * 173.64838 * 28 14 13 48 48 H 1.08996 * 109.58747 * 294.07351 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 1 0.6253 -2.5573 -0.8924 11 6 2.2443 -3.6633 0.0015 12 6 1.4798 -4.9887 -0.0331 13 6 0.6014 -5.0995 1.2224 14 7 -0.2573 -3.9097 1.2984 15 6 -1.5940 -4.0340 1.4173 16 8 -2.3010 -3.0451 1.3946 17 7 -2.1471 -5.2546 1.5613 18 6 -3.5869 -5.3829 1.7998 19 6 -3.9532 -6.8632 1.9245 20 1 -3.3414 -7.3248 2.6997 21 6 -5.4316 -6.9931 2.2969 22 6 -5.6494 -6.4500 3.6856 23 8 -4.7285 -5.9571 4.2929 24 8 -6.8666 -6.5137 4.2478 25 6 -3.7000 -7.5656 0.5892 26 6 -2.4815 -8.4861 0.4945 27 6 -3.8895 -9.0831 0.5420 28 6 0.3695 -2.5817 1.2486 29 1 -0.4850 0.8401 0.0004 30 1 2.8890 -3.5930 -0.8744 31 1 2.8530 -3.6188 0.9047 32 1 0.8519 -5.0233 -0.9235 33 1 2.1881 -5.8168 -0.0550 34 1 1.2324 -5.1519 2.1096 35 1 -0.0183 -5.9939 1.1588 36 1 -1.5918 -6.0481 1.5070 37 1 -4.1339 -4.9427 0.9661 38 1 -3.8501 -4.8642 2.7216 39 1 -6.0359 -6.4284 1.5869 40 1 -5.7227 -8.0430 2.2675 41 1 -6.9575 -6.1521 5.1401 42 1 -3.9712 -6.9966 -0.3001 43 1 -1.9512 -8.5229 -0.4570 44 1 -1.8598 -8.5911 1.3836 45 1 -4.1942 -9.5810 1.4625 46 1 -4.2854 -9.5125 -0.3783 47 1 -0.4032 -1.8145 1.2022 48 1 0.9819 -2.4331 2.1379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601063955.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:49 Heat of formation + Delta-G solvation = -104.215942 kcal Electronic energy + Delta-G solvation = -28575.404308 eV Core-core repulsion = 24630.772004 eV Total energy + Delta-G solvation = -3944.632304 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.71557 -39.61059 -38.35266 -36.69270 -36.37492 -34.44157 -33.35259 -32.35367 -31.52305 -29.64872 -27.53599 -25.01194 -24.58217 -23.22499 -22.71424 -21.76814 -21.72609 -20.20430 -19.87931 -18.63723 -18.27966 -17.49896 -16.89304 -16.48102 -16.07355 -15.80182 -15.28910 -15.11545 -14.54799 -14.33857 -13.93115 -13.66374 -13.61453 -13.35561 -13.33383 -12.80200 -12.58149 -12.53624 -12.41060 -11.99583 -11.85039 -11.82756 -11.78799 -11.47763 -11.23845 -10.93243 -10.84887 -10.73463 -10.45097 -10.40183 -10.34428 -10.29304 -10.15701 -9.80144 -9.32147 -9.02394 -8.87603 -8.55921 -8.34528 -7.52507 -5.91392 -4.00737 1.98063 2.73358 3.31482 3.37484 3.42795 3.45080 3.50862 3.99093 4.29873 4.36098 4.48909 4.52584 4.63959 4.74821 4.79791 4.97191 5.15173 5.26198 5.33950 5.36700 5.38363 5.40521 5.44006 5.55844 5.64015 5.68260 5.84288 5.88626 6.02768 6.04787 6.09628 6.22658 6.33729 6.37660 6.65448 6.74927 6.88253 6.97153 7.06378 7.14212 7.45213 7.61222 7.65540 7.83234 8.01589 8.15108 8.48564 8.72298 9.02971 9.39926 9.64477 11.13339 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.016460 B = 0.003094 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.669105 B = 9047.843710 C =10228.397054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.132 4.132 13 C 0.116 3.884 14 N -0.623 5.623 15 C 0.700 3.300 16 O -0.584 6.584 17 N -0.751 5.751 18 C 0.142 3.858 19 C -0.059 4.059 20 H 0.086 0.914 21 C -0.103 4.103 22 C 0.473 3.527 23 O -0.503 6.503 24 O -0.521 6.521 25 C -0.149 4.149 26 C -0.177 4.177 27 C -0.180 4.180 28 C 0.129 3.871 29 H 0.263 0.737 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.389 0.611 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.410 0.590 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.123 0.877 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.425 -21.054 4.204 23.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.046 0.954 11 C -0.147 4.147 12 C -0.170 4.170 13 C -0.008 4.008 14 N -0.360 5.360 15 C 0.401 3.599 16 O -0.461 6.461 17 N -0.411 5.411 18 C 0.017 3.983 19 C -0.078 4.078 20 H 0.105 0.895 21 C -0.141 4.141 22 C 0.315 3.685 23 O -0.390 6.390 24 O -0.333 6.333 25 C -0.167 4.167 26 C -0.214 4.214 27 C -0.217 4.217 28 C 0.009 3.991 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.225 0.775 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.269 0.731 42 H 0.130 0.870 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.141 0.859 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.810 -20.176 3.985 23.234 hybrid contribution 0.710 0.670 0.537 1.114 sum -10.100 -19.507 4.522 22.427 Atomic orbital electron populations 1.69909 1.05667 1.26712 1.49187 1.25062 0.94866 0.99186 0.94947 0.86615 0.79814 0.83665 0.78010 1.20757 1.21217 1.19952 1.21075 0.92837 0.90195 1.51926 0.92454 1.18974 0.92579 0.92093 0.94273 0.95386 1.21613 0.98533 0.94166 1.00428 1.22013 0.98531 0.99028 0.97471 1.21559 0.93308 0.87590 0.98363 1.47753 1.03502 1.08725 1.76049 1.15943 0.82554 0.83182 0.78187 1.90920 1.60509 1.36670 1.57992 1.45188 1.08615 1.07211 1.80070 1.21239 0.81326 0.93650 1.02069 1.20844 0.94120 0.96634 0.96164 0.89535 1.21316 0.98460 1.03981 0.90371 1.23554 0.79771 0.75892 0.89316 1.90783 1.43088 1.41301 1.63854 1.84516 1.34679 1.77219 1.36891 1.22318 1.03778 0.92111 0.98486 1.23038 0.91028 1.03738 1.03586 1.22960 1.00159 0.95369 1.03200 1.22152 0.98281 0.80713 0.98001 0.92712 0.93152 0.93248 0.92218 0.92478 0.92286 0.92243 0.77468 0.92112 0.90482 0.86927 0.87147 0.73072 0.87027 0.88408 0.88683 0.88835 0.88639 0.85933 0.94408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.32 11.39 55.43 0.63 -25.69 16 2 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.46 8.57 -34.44 -0.29 -14.76 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.04 1.02 2.25 -91.65 -0.21 0.81 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.11 -2.23 5.11 -26.69 -0.14 -2.37 16 12 C -0.13 -2.17 6.10 -26.39 -0.16 -2.34 16 13 C 0.12 1.88 6.42 -3.48 -0.02 1.86 16 14 N -0.62 -13.22 2.97 -178.22 -0.53 -13.74 16 15 C 0.70 15.20 8.30 -86.92 -0.72 14.48 16 16 O -0.58 -15.52 15.77 5.29 0.08 -15.43 16 17 N -0.75 -12.04 5.26 -65.23 -0.34 -12.38 16 18 C 0.14 1.99 4.87 -4.04 -0.02 1.97 16 19 C -0.06 -0.54 1.64 -90.62 -0.15 -0.69 16 20 H 0.09 0.85 7.74 -51.93 -0.40 0.44 16 21 C -0.10 -0.75 5.24 -27.88 -0.15 -0.90 16 22 C 0.47 4.49 8.05 36.01 0.29 4.78 16 23 O -0.50 -6.76 14.76 -18.75 -0.28 -7.04 16 24 O -0.52 -3.77 13.42 -39.24 -0.53 -4.29 16 25 C -0.15 -1.19 4.65 -90.63 -0.42 -1.61 16 26 C -0.18 -1.32 9.72 -26.73 -0.26 -1.58 16 27 C -0.18 -1.12 9.71 -26.73 -0.26 -1.38 16 28 C 0.13 3.27 5.41 -3.71 -0.02 3.25 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.77 5.63 -51.93 -0.29 0.48 16 36 H 0.39 5.16 5.28 -40.82 -0.22 4.95 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.28 5.95 -51.93 -0.31 0.97 16 39 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.11 0.55 7.45 -51.93 -0.39 0.16 16 41 H 0.41 1.51 9.10 45.56 0.41 1.93 16 42 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.09 0.68 8.08 -51.93 -0.42 0.26 16 45 H 0.09 0.51 7.92 -51.93 -0.41 0.10 16 46 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.12 3.64 5.11 -51.93 -0.27 3.38 16 48 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 381.79 15.07 5.75 5.75 Total: -1.00 -36.05 381.79 -9.75 -45.80 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.90 Total: 7.14 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -2.62 Total: 3.21 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: -0.24 Total: -51.81 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.72 Total: -26.76 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.05 -9.75 -45.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063955.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.418 kcal (2) G-P(sol) polarization free energy of solvation -36.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds