Wall clock time and date at job start Tue Mar 31 2020 13:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99804 * 2 1 4 4 H 1.48497 * 109.47446 * 270.00260 * 3 2 1 5 5 H 1.48504 * 109.47028 * 30.00227 * 3 2 1 6 6 H 1.48497 * 109.47094 * 150.00010 * 3 2 1 7 7 C 1.37873 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00160 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00037 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.49948 * 299.91890 * 9 7 2 11 11 C 1.53117 * 109.50804 * 59.99626 * 9 7 2 12 12 C 1.53114 * 109.16595 * 177.59800 * 11 9 7 13 13 C 1.53038 * 109.27718 * 302.34736 * 12 11 9 14 14 N 1.46846 * 109.52432 * 59.17430 * 13 12 11 15 15 C 1.46903 * 111.00118 * 174.15842 * 14 13 12 16 16 H 1.09003 * 109.39920 * 186.21856 * 15 14 13 17 17 C 1.53074 * 109.39723 * 66.47912 * 15 14 13 18 18 C 1.53342 * 108.42315 * 190.96996 * 17 15 14 19 19 C 1.52740 * 108.82230 * 67.36946 * 18 17 15 20 20 N 1.45749 * 110.58772 * 309.61324 * 19 18 17 21 21 C 1.46500 * 117.94701 * 198.88739 * 20 19 18 22 22 C 1.52997 * 109.47473 * 269.73766 * 21 20 19 23 23 C 1.50701 * 109.47212 * 179.97438 * 22 21 20 24 24 O 1.20826 * 119.99939 * 0.02562 * 23 22 21 25 25 O 1.34230 * 120.00046 * 179.97438 * 23 22 21 26 26 C 1.33355 * 124.10895 * 18.61069 * 20 19 18 27 27 O 1.21276 * 118.24971 * 178.08306 * 26 20 19 28 28 C 1.46843 * 111.20206 * 298.26248 * 14 13 12 29 29 H 0.96999 * 120.00595 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.52167 * 57.68855 * 11 9 7 31 31 H 1.09004 * 109.52200 * 297.50675 * 11 9 7 32 32 H 1.08997 * 109.50434 * 182.40787 * 12 11 9 33 33 H 1.08994 * 109.53762 * 62.30429 * 12 11 9 34 34 H 1.09000 * 109.46287 * 299.16117 * 13 12 11 35 35 H 1.08996 * 109.46776 * 179.19419 * 13 12 11 36 36 H 1.09000 * 109.67466 * 310.70529 * 17 15 14 37 37 H 1.08999 * 109.67314 * 71.20286 * 17 15 14 38 38 H 1.09003 * 109.60417 * 187.28902 * 18 17 15 39 39 H 1.09001 * 109.60390 * 307.61055 * 18 17 15 40 40 H 1.08998 * 109.40233 * 189.16967 * 19 18 17 41 41 H 1.09006 * 109.09923 * 69.85415 * 19 18 17 42 42 H 1.09002 * 109.47129 * 149.73509 * 21 20 19 43 43 H 1.08998 * 109.46845 * 29.74315 * 21 20 19 44 44 H 1.09002 * 109.47153 * 59.99757 * 22 21 20 45 45 H 1.09001 * 109.46832 * 299.99948 * 22 21 20 46 46 H 0.96691 * 117.00026 * 180.02562 * 25 23 22 47 47 H 1.09000 * 109.46392 * 181.75407 * 28 14 13 48 48 H 1.09004 * 109.45772 * 301.72254 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6250 -2.5586 0.8886 11 6 0.3709 -2.5803 -1.2520 12 6 -0.3447 -3.9337 -1.2759 13 6 0.6954 -5.0558 -1.2443 14 7 1.5113 -4.9347 -0.0294 15 6 2.4287 -6.0742 0.1044 16 1 2.9407 -6.0160 1.0649 17 6 3.4621 -6.0301 -1.0240 18 6 4.2284 -7.3583 -1.0316 19 6 3.2731 -8.4760 -1.4454 20 7 2.0513 -8.4256 -0.6525 21 6 1.2172 -9.6289 -0.5994 22 6 0.1908 -9.5885 -1.7333 23 6 -0.6667 -10.8266 -1.6790 24 8 -0.4768 -11.6558 -0.8210 25 8 -1.6422 -11.0075 -2.5831 26 6 1.6476 -7.3547 0.0321 27 8 0.5936 -7.4185 0.6285 28 6 2.2449 -3.6629 -0.0071 29 1 -0.4851 0.8400 0.0004 30 1 0.9923 -2.4810 -2.1420 31 1 -0.3670 -1.7783 -1.2306 32 1 -0.9399 -4.0146 -2.1855 33 1 -0.9963 -4.0169 -0.4061 34 1 1.3374 -4.9807 -2.1220 35 1 0.1887 -6.0209 -1.2468 36 1 2.9563 -5.8928 -1.9797 37 1 4.1558 -5.2066 -0.8544 38 1 5.0541 -7.3001 -1.7409 39 1 4.6171 -7.5619 -0.0338 40 1 3.7589 -9.4405 -1.2980 41 1 3.0232 -8.3593 -2.5000 42 1 0.6988 -9.6696 0.3586 43 1 1.8463 -10.5121 -0.7098 44 1 0.7092 -9.5477 -2.6913 45 1 -0.4382 -8.7052 -1.6227 46 1 -2.1660 -11.8167 -2.5077 47 1 2.8636 -3.6162 0.8891 48 1 2.8798 -3.5943 -0.8905 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064049.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:08 Heat of formation + Delta-G solvation = -149.518883 kcal Electronic energy + Delta-G solvation = -29071.127260 eV Core-core repulsion = 25124.530473 eV Total energy + Delta-G solvation = -3946.596786 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.07577 -41.19059 -39.54414 -37.53489 -37.19214 -36.24655 -34.68133 -33.16484 -31.70724 -31.50832 -29.35875 -27.00169 -26.56294 -25.55564 -23.52594 -23.22834 -23.07610 -22.00234 -20.29906 -19.33439 -19.04420 -18.54436 -18.01891 -17.69077 -17.16556 -16.96943 -16.92069 -16.45048 -15.71644 -15.60185 -15.35617 -15.16430 -14.77453 -14.61115 -14.43733 -14.27867 -14.15665 -14.04252 -13.88626 -13.40772 -13.26186 -12.85431 -12.78032 -12.60058 -12.55954 -12.50784 -12.44353 -12.23409 -12.12146 -11.91134 -11.81036 -11.71071 -11.61765 -11.37867 -10.94143 -10.67353 -10.55559 -10.35633 -9.79271 -9.04379 -8.05253 -6.19939 1.15942 1.43180 1.44197 1.50981 1.54486 1.75798 2.33525 2.45446 3.05151 3.21940 3.51516 3.73074 3.80628 3.82660 3.98177 4.05249 4.15449 4.21112 4.28129 4.35778 4.43935 4.49862 4.52831 4.59152 4.65920 4.70155 4.74486 4.84664 4.86925 4.91778 4.96243 5.04436 5.09779 5.12500 5.18422 5.32250 5.38580 5.45587 5.51545 5.58995 5.65519 5.95185 6.12702 6.18312 6.21883 6.45366 6.47287 6.93412 6.95652 7.18372 7.48250 8.99639 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.021130 B = 0.002998 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.826960 B = 9337.729550 C =10167.854184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.051 3.949 10 H -0.012 1.012 11 C -0.100 4.100 12 C -0.110 4.110 13 C 0.073 3.927 14 N -0.537 5.537 15 C 0.073 3.927 16 H 0.105 0.895 17 C -0.154 4.154 18 C -0.124 4.124 19 C 0.105 3.895 20 N -0.598 5.598 21 C 0.124 3.876 22 C -0.126 4.126 23 C 0.493 3.507 24 O -0.549 6.549 25 O -0.514 6.514 26 C 0.522 3.478 27 O -0.572 6.572 28 C 0.087 3.913 29 H 0.259 0.741 30 H 0.031 0.969 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.037 0.963 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.111 0.889 44 H 0.137 0.863 45 H 0.095 0.905 46 H 0.429 0.571 47 H 0.057 0.943 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.574 -22.374 -9.330 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.782 3.218 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.570 4.570 8 H 0.076 0.924 9 C 0.033 3.967 10 H 0.006 0.994 11 C -0.138 4.138 12 C -0.148 4.148 13 C -0.055 4.055 14 N -0.262 5.262 15 C -0.038 4.038 16 H 0.123 0.877 17 C -0.193 4.193 18 C -0.162 4.162 19 C -0.016 4.016 20 N -0.330 5.330 21 C 0.000 4.000 22 C -0.164 4.164 23 C 0.337 3.663 24 O -0.440 6.440 25 O -0.328 6.328 26 C 0.310 3.690 27 O -0.451 6.451 28 C -0.039 4.039 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.132 0.868 39 H 0.094 0.906 40 H 0.125 0.875 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.129 0.871 44 H 0.155 0.845 45 H 0.113 0.887 46 H 0.291 0.709 47 H 0.076 0.924 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.856 -22.142 -8.418 24.661 hybrid contribution -0.064 0.806 -0.150 0.822 sum 6.792 -21.337 -8.568 23.975 Atomic orbital electron populations 1.70061 1.07359 1.27002 1.51343 1.25762 0.95606 1.02489 0.94871 0.85589 0.78716 0.79294 0.78230 1.19973 1.21364 1.19060 1.21505 0.93144 0.91786 1.50555 0.92421 1.18597 0.93053 0.91639 0.93459 0.99420 1.21433 0.99124 0.95540 0.97702 1.21563 0.97552 0.95357 1.00340 1.21940 0.94980 0.98194 0.90349 1.61876 1.23734 1.01432 1.39129 1.21712 0.92231 0.88246 1.01612 0.87725 1.22350 0.98189 1.00303 0.98443 1.21806 0.98281 0.91918 1.04189 1.21783 0.83141 1.01351 0.95367 1.47442 1.24811 1.11936 1.48839 1.21210 0.93054 0.87616 0.98079 1.21673 0.97350 0.93753 1.03659 1.23368 0.78464 0.87290 0.77178 1.90729 1.69773 1.46455 1.37090 1.84508 1.45222 1.49341 1.53686 1.20145 0.85588 0.85260 0.77987 1.90711 1.25072 1.83241 1.46041 1.21978 0.95278 0.87391 0.99303 0.93188 0.95009 0.92553 0.91294 0.94393 0.94029 0.91798 0.91068 0.90334 0.86823 0.90626 0.87496 0.89734 0.91839 0.87056 0.84486 0.88666 0.70935 0.92400 0.94563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.25 11.35 21.45 0.24 -54.01 16 2 C 0.01 0.63 5.30 84.65 0.45 1.07 16 3 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.53 -29.26 8.56 25.60 0.22 -29.04 16 8 H 0.06 3.05 7.74 -2.91 -0.02 3.02 16 9 C 0.05 2.65 2.26 -11.49 -0.03 2.63 16 10 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 11 C -0.10 -4.86 5.02 30.67 0.15 -4.71 16 12 C -0.11 -4.55 6.09 30.65 0.19 -4.36 16 13 C 0.07 2.59 4.76 86.33 0.41 3.00 16 14 N -0.54 -20.15 4.47 -876.34 -3.92 -24.07 16 15 C 0.07 2.11 2.54 44.03 0.11 2.22 16 16 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 17 C -0.15 -3.13 4.43 30.73 0.14 -2.99 16 18 C -0.12 -1.44 6.01 30.62 0.18 -1.26 16 19 C 0.10 1.08 6.38 86.43 0.55 1.63 16 20 N -0.60 -11.43 2.81 -827.01 -2.33 -13.76 16 21 C 0.12 2.29 4.49 86.38 0.39 2.68 16 22 C -0.13 -2.04 6.13 29.85 0.18 -1.86 16 23 C 0.49 8.86 8.33 71.24 0.59 9.45 16 24 O -0.55 -13.19 16.74 21.97 0.37 -12.82 16 25 O -0.51 -6.87 13.42 -51.41 -0.69 -7.56 16 26 C 0.52 14.94 5.63 87.71 0.49 15.43 16 27 O -0.57 -21.83 15.21 -3.02 -0.05 -21.88 16 28 C 0.09 3.61 4.07 86.33 0.35 3.96 16 29 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 3.13 6.15 -2.39 -0.01 3.12 16 32 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.04 1.33 6.55 -2.39 -0.02 1.32 16 35 H 0.06 2.21 6.26 -2.39 -0.01 2.20 16 36 H 0.07 1.51 6.26 -2.39 -0.01 1.49 16 37 H 0.08 1.68 7.17 -2.39 -0.02 1.67 16 38 H 0.11 0.76 8.14 -2.39 -0.02 0.75 16 39 H 0.08 0.90 8.12 -2.39 -0.02 0.88 16 40 H 0.11 0.56 7.92 -2.39 -0.02 0.54 16 41 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 42 H 0.06 1.64 7.16 -2.39 -0.02 1.63 16 43 H 0.11 1.48 7.81 -2.39 -0.02 1.46 16 44 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.43 2.12 9.10 -74.06 -0.67 1.44 16 47 H 0.06 2.37 8.12 -2.39 -0.02 2.36 16 48 H 0.04 1.40 6.86 -2.38 -0.02 1.39 16 Total: -1.00 -76.81 371.70 0.33 -76.47 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.29 Total: 14.10 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 4.39 Total: -2.14 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -6.00 Total: -91.84 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -0.37 Total: -42.25 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -76.81 0.33 -76.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064049.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.045 kcal (2) G-P(sol) polarization free energy of solvation -76.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds