Wall clock time and date at job start Tue Mar 31 2020 13:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00456 * 2 1 4 4 H 1.48500 * 109.46943 * 270.00010 * 3 2 1 5 5 H 1.48500 * 109.46887 * 29.99739 * 3 2 1 6 6 H 1.48500 * 109.46907 * 150.00077 * 3 2 1 7 7 C 1.37885 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99485 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00194 * 180.02562 * 7 2 1 10 10 H 1.09003 * 109.50087 * 60.07441 * 9 7 2 11 11 C 1.53116 * 109.49935 * 299.99781 * 9 7 2 12 12 C 1.53121 * 109.15995 * 182.36453 * 11 9 7 13 13 C 1.53042 * 109.27566 * 57.65032 * 12 11 9 14 14 N 1.46841 * 109.52771 * 300.82084 * 13 12 11 15 15 C 1.46897 * 111.00065 * 185.83674 * 14 13 12 16 16 H 1.09002 * 109.39877 * 184.14590 * 15 14 13 17 17 C 1.53068 * 109.33376 * 303.93112 * 15 14 13 18 18 C 1.52893 * 108.34098 * 168.95759 * 17 15 14 19 19 C 1.52922 * 108.90970 * 292.38338 * 18 17 15 20 20 N 1.45758 * 110.32014 * 50.81391 * 19 18 17 21 21 C 1.46506 * 117.94597 * 161.05132 * 20 19 18 22 22 C 1.53001 * 109.47082 * 89.99883 * 21 20 19 23 23 C 1.50705 * 109.46822 * 180.02562 * 22 21 20 24 24 O 1.20823 * 119.99955 * 359.97438 * 23 22 21 25 25 O 1.34225 * 119.99745 * 179.97438 * 23 22 21 26 26 C 1.33355 * 124.10537 * 341.02268 * 20 19 18 27 27 O 1.21288 * 118.24392 * 182.24714 * 26 20 19 28 28 C 1.46855 * 111.19520 * 61.74210 * 14 13 12 29 29 H 0.96999 * 119.99429 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.52650 * 62.46288 * 11 9 7 31 31 H 1.08994 * 109.57816 * 302.29789 * 11 9 7 32 32 H 1.09006 * 109.50431 * 297.71716 * 12 11 9 33 33 H 1.08999 * 109.50632 * 177.59639 * 12 11 9 34 34 H 1.09011 * 109.45858 * 180.80594 * 13 12 11 35 35 H 1.09001 * 109.45949 * 60.84586 * 13 12 11 36 36 H 1.09003 * 109.67340 * 288.71918 * 17 15 14 37 37 H 1.09000 * 109.67194 * 49.21744 * 17 15 14 38 38 H 1.08993 * 109.35296 * 172.63766 * 18 17 15 39 39 H 1.08994 * 109.62097 * 52.29257 * 18 17 15 40 40 H 1.08997 * 109.30248 * 290.60545 * 19 18 17 41 41 H 1.08998 * 109.30280 * 171.01836 * 19 18 17 42 42 H 1.09002 * 109.46758 * 209.99858 * 21 20 19 43 43 H 1.08998 * 109.46598 * 329.99889 * 21 20 19 44 44 H 1.09010 * 109.46973 * 299.99776 * 22 21 20 45 45 H 1.08995 * 109.47268 * 59.99992 * 22 21 20 46 46 H 0.96698 * 116.99668 * 179.97438 * 25 23 22 47 47 H 1.09003 * 109.46028 * 58.27242 * 28 14 13 48 48 H 1.09001 * 109.46219 * 178.24035 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1943 0.0000 10 1 3.8751 -0.6823 0.8910 11 6 4.0232 -0.4719 -1.2493 12 6 5.5532 -0.5280 -1.2710 13 6 6.0057 -1.9896 -1.2393 14 7 5.4915 -2.6363 -0.0253 15 6 6.0201 -4.0003 0.1087 16 1 5.5662 -4.4810 0.9754 17 6 5.6822 -4.8008 -1.1515 18 6 6.4687 -6.1114 -1.1143 19 6 7.9582 -5.8000 -1.2656 20 7 8.3593 -4.7705 -0.3149 21 6 9.7857 -4.6369 -0.0087 22 6 10.4262 -3.6472 -0.9840 23 6 11.8936 -3.5103 -0.6694 24 8 12.3774 -4.1393 0.2417 25 8 12.6632 -2.6895 -1.4014 26 6 7.5092 -3.9423 0.2933 27 8 7.9632 -3.0968 1.0350 28 6 4.0231 -2.6365 -0.0051 29 1 -0.4849 0.8401 -0.0004 30 1 3.6971 0.5681 -1.2280 31 1 3.6282 -0.9593 -2.1405 32 1 5.9490 -0.0056 -0.4000 33 1 5.9220 -0.0525 -2.1799 34 1 7.0949 -2.0327 -1.2402 35 1 5.6211 -2.5080 -2.1177 36 1 4.6134 -5.0134 -1.1757 37 1 5.9627 -4.2285 -2.0359 38 1 6.1437 -6.7511 -1.9347 39 1 6.2953 -6.6154 -0.1636 40 1 8.1518 -5.4493 -2.2793 41 1 8.5362 -6.7055 -1.0811 42 1 9.9057 -4.2712 1.0111 43 1 10.2707 -5.6082 -0.1058 44 1 10.3062 -4.0130 -2.0039 45 1 9.9412 -2.6760 -0.8869 46 1 13.5983 -2.6345 -1.1616 47 1 3.6478 -3.1519 -0.8893 48 1 3.6723 -3.1496 0.8904 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:22 Heat of formation + Delta-G solvation = -144.501024 kcal Electronic energy + Delta-G solvation = -29123.512183 eV Core-core repulsion = 25177.132987 eV Total energy + Delta-G solvation = -3946.379196 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.05039 -41.18910 -39.71032 -37.51589 -37.19913 -36.33786 -34.71024 -33.43785 -32.04617 -31.54641 -29.51362 -26.93698 -26.61091 -25.71069 -23.57401 -23.30412 -23.01789 -21.98598 -20.39276 -19.34775 -19.04542 -18.85994 -18.06971 -17.76448 -17.29998 -17.10413 -16.90672 -16.40175 -15.79451 -15.63613 -15.49095 -15.18992 -14.94668 -14.75212 -14.60398 -14.35011 -14.23297 -14.14581 -13.90820 -13.74162 -13.27380 -13.01476 -12.77114 -12.67785 -12.58514 -12.46332 -12.33662 -12.25297 -12.13815 -11.93378 -11.89722 -11.71284 -11.56706 -11.40672 -11.02009 -10.91063 -10.63022 -10.54015 -9.78221 -9.09525 -8.29944 -6.32218 1.16652 1.28602 1.36729 1.47255 1.51841 1.76853 2.32946 2.33968 2.99264 3.06369 3.52802 3.73429 3.77778 3.81633 3.96897 4.02916 4.05983 4.08850 4.24086 4.30555 4.37252 4.45241 4.48323 4.51375 4.59455 4.67629 4.70135 4.75399 4.76677 4.88623 4.92583 4.93597 4.99995 5.09118 5.11287 5.13472 5.21766 5.32960 5.45175 5.46260 5.59525 5.63278 5.72976 6.11278 6.13401 6.34308 6.46863 6.74805 6.95897 7.20230 7.33568 8.86609 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.018590 B = 0.003258 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.820485 B = 8592.022362 C = 9555.625357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.017 3.983 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.301 1.301 6 H -0.258 1.258 7 C -0.513 4.513 8 H 0.040 0.960 9 C 0.018 3.982 10 H 0.014 0.986 11 C -0.118 4.118 12 C -0.115 4.115 13 C 0.068 3.932 14 N -0.538 5.538 15 C 0.074 3.926 16 H 0.104 0.896 17 C -0.156 4.156 18 C -0.125 4.125 19 C 0.106 3.894 20 N -0.598 5.598 21 C 0.123 3.877 22 C -0.125 4.125 23 C 0.493 3.507 24 O -0.550 6.550 25 O -0.514 6.514 26 C 0.523 3.477 27 O -0.571 6.571 28 C 0.094 3.906 29 H 0.265 0.735 30 H 0.032 0.968 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.109 0.891 44 H 0.138 0.862 45 H 0.097 0.903 46 H 0.428 0.572 47 H 0.037 0.963 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.871 -13.844 -9.157 29.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.180 4.180 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.229 1.229 6 H -0.182 1.182 7 C -0.552 4.552 8 H 0.058 0.942 9 C -0.001 4.001 10 H 0.032 0.968 11 C -0.156 4.156 12 C -0.152 4.152 13 C -0.060 4.060 14 N -0.262 5.262 15 C -0.037 4.037 16 H 0.121 0.879 17 C -0.195 4.195 18 C -0.163 4.163 19 C -0.015 4.015 20 N -0.331 5.331 21 C 0.000 4.000 22 C -0.163 4.163 23 C 0.336 3.664 24 O -0.442 6.442 25 O -0.328 6.328 26 C 0.311 3.689 27 O -0.449 6.449 28 C -0.033 4.033 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.123 0.877 42 H 0.081 0.919 43 H 0.128 0.872 44 H 0.156 0.844 45 H 0.115 0.885 46 H 0.290 0.710 47 H 0.055 0.945 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 23.819 -13.229 -8.234 28.464 hybrid contribution -0.109 0.769 0.018 0.777 sum 23.710 -12.461 -8.216 28.017 Atomic orbital electron populations 1.70031 1.07970 1.27891 1.52981 1.25747 0.95307 1.02594 0.94379 0.85881 0.78806 0.79262 0.78662 1.18962 1.22869 1.18208 1.21292 0.91122 0.93122 1.49637 0.94164 1.19076 0.93117 0.93757 0.94136 0.96754 1.21891 0.95219 0.98860 0.99628 1.21615 0.95166 0.96634 1.01815 1.22015 0.98860 0.94424 0.90662 1.61800 1.08695 1.16275 1.39406 1.21652 0.91143 0.90097 1.00817 0.87859 1.22315 1.02105 0.97578 0.97529 1.21757 0.93250 0.96538 1.04767 1.21823 0.96355 0.90838 0.92510 1.47451 1.06250 1.35033 1.44356 1.21204 0.79981 1.00334 0.98482 1.21671 0.87025 1.03440 1.04177 1.23408 0.90263 0.74658 0.78058 1.90732 1.75998 1.46067 1.31359 1.84505 1.28164 1.61389 1.58701 1.20147 0.89067 0.80373 0.79337 1.90707 1.78342 1.36905 1.38974 1.21768 0.84542 0.97198 0.99766 0.92590 0.94979 0.92241 0.93208 0.89720 0.91172 0.93029 0.90643 0.90175 0.86957 0.90861 0.89445 0.87706 0.91907 0.87248 0.84416 0.88466 0.70956 0.94468 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 2 C 0.02 0.99 5.45 84.66 0.46 1.45 16 3 Si 0.95 46.63 24.35 68.60 1.67 48.30 16 4 H -0.26 -12.20 6.89 99.48 0.69 -11.52 16 5 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 6 H -0.26 -12.36 6.53 99.48 0.65 -11.72 16 7 C -0.51 -29.22 9.15 25.60 0.23 -28.99 16 8 H 0.04 2.48 7.99 -2.91 -0.02 2.46 16 9 C 0.02 0.87 1.85 -11.49 -0.02 0.85 16 10 H 0.01 0.74 7.21 -2.39 -0.02 0.72 16 11 C -0.12 -4.96 4.73 30.67 0.15 -4.81 16 12 C -0.11 -3.90 6.09 30.65 0.19 -3.71 16 13 C 0.07 2.03 4.64 86.33 0.40 2.43 16 14 N -0.54 -18.24 4.37 -876.34 -3.83 -22.07 16 15 C 0.07 1.97 2.41 44.03 0.11 2.08 16 16 H 0.10 2.84 8.02 -2.39 -0.02 2.82 16 17 C -0.16 -2.87 4.61 30.58 0.14 -2.73 16 18 C -0.13 -1.32 5.98 30.53 0.18 -1.14 16 19 C 0.11 0.94 6.40 86.49 0.55 1.50 16 20 N -0.60 -10.44 2.81 -826.61 -2.32 -12.76 16 21 C 0.12 2.11 4.49 86.38 0.39 2.50 16 22 C -0.12 -1.80 6.13 29.85 0.18 -1.62 16 23 C 0.49 8.18 8.33 71.24 0.59 8.77 16 24 O -0.55 -12.65 16.74 21.97 0.37 -12.28 16 25 O -0.51 -6.17 13.42 -51.37 -0.69 -6.86 16 26 C 0.52 13.89 5.79 87.71 0.51 14.40 16 27 O -0.57 -20.61 15.90 -3.05 -0.05 -20.66 16 28 C 0.09 3.70 4.33 86.32 0.37 4.07 16 29 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 30 H 0.03 1.43 3.34 -2.38 -0.01 1.42 16 31 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.07 1.98 7.02 -2.38 -0.02 1.96 16 35 H 0.05 1.37 6.34 -2.39 -0.02 1.36 16 36 H 0.07 1.52 7.31 -2.39 -0.02 1.50 16 37 H 0.08 1.44 5.89 -2.39 -0.01 1.43 16 38 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 40 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.10 0.45 7.92 -2.39 -0.02 0.43 16 42 H 0.06 1.55 7.16 -2.39 -0.02 1.53 16 43 H 0.11 1.35 7.82 -2.39 -0.02 1.33 16 44 H 0.14 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.43 1.62 9.10 -74.06 -0.67 0.95 16 47 H 0.04 1.39 7.07 -2.39 -0.02 1.38 16 48 H 0.06 2.35 8.03 -2.39 -0.02 2.33 16 Total: -1.00 -80.13 366.10 0.10 -80.03 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.22 Total: 10.52 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 4.43 Total: -4.95 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -5.86 Total: -94.10 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -0.37 Total: -39.80 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.67 Total: 48.30 kcal Total: -80.13 0.10 -80.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.472 kcal (2) G-P(sol) polarization free energy of solvation -80.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds