Wall clock time and date at job start Tue Mar 31 2020 13:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00041 * 2 1 4 4 H 1.48507 * 109.47376 * 270.00210 * 3 2 1 5 5 H 1.48501 * 109.47117 * 30.00092 * 3 2 1 6 6 H 1.48503 * 109.47362 * 150.00021 * 3 2 1 7 7 C 1.38810 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99914 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99780 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46878 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47059 * 305.00173 * 11 10 9 13 13 C 1.53004 * 109.46990 * 65.00329 * 11 10 9 14 14 C 1.53004 * 109.46990 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.46860 * 299.99968 * 14 13 11 16 16 H 1.08998 * 109.47183 * 299.99800 * 15 14 13 17 17 C 1.52998 * 109.47111 * 180.02562 * 15 14 13 18 18 N 1.46502 * 109.47209 * 64.99455 * 17 15 14 19 19 C 1.34778 * 120.00212 * 180.02562 * 18 17 15 20 20 O 1.21280 * 119.99636 * 0.02562 * 19 18 17 21 21 C 1.50697 * 120.00145 * 180.02562 * 19 18 17 22 22 H 1.09002 * 115.54932 * 325.58291 * 21 19 18 23 23 C 1.53002 * 117.49992 * 111.25454 * 21 19 18 24 24 C 1.53000 * 117.50034 * 179.91227 * 21 19 18 25 25 H 1.09008 * 117.49673 * 359.97438 * 24 21 19 26 26 C 1.50692 * 117.50104 * 144.97111 * 24 21 19 27 27 O 1.20830 * 120.00022 * 0.02562 * 26 24 21 28 28 O 1.34231 * 120.00483 * 179.97438 * 26 24 21 29 29 C 1.52996 * 109.47636 * 59.99936 * 15 14 13 30 30 C 1.52998 * 109.47099 * 184.99996 * 11 10 9 31 31 H 0.97007 * 120.00078 * 0.02562 * 1 2 3 32 32 H 0.96996 * 120.00285 * 359.97438 * 9 7 2 33 33 H 1.08994 * 109.46733 * 60.00244 * 10 9 7 34 34 H 1.08994 * 109.47084 * 299.99989 * 10 9 7 35 35 H 1.09004 * 109.47025 * 299.99773 * 13 11 10 36 36 H 1.08999 * 109.47587 * 59.99531 * 13 11 10 37 37 H 1.09001 * 109.46836 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.47059 * 59.99844 * 14 13 11 39 39 H 1.08997 * 109.47080 * 304.99960 * 17 15 14 40 40 H 1.08997 * 109.47589 * 184.99976 * 17 15 14 41 41 H 0.97004 * 119.99847 * 0.02562 * 18 17 15 42 42 H 1.09000 * 117.49996 * 215.00670 * 23 21 19 43 43 H 1.08999 * 117.49664 * 0.02562 * 23 21 19 44 44 H 0.96696 * 117.00687 * 180.02562 * 28 26 24 45 45 H 1.09007 * 109.46740 * 59.99741 * 29 15 14 46 46 H 1.08996 * 109.47262 * 180.02562 * 29 15 14 47 47 H 1.08996 * 109.47121 * 59.99877 * 30 11 10 48 48 H 1.08999 * 109.46790 * 300.00047 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0638 -4.8197 -0.0031 12 1 0.3800 -4.7134 0.8390 13 6 0.2686 -4.8103 -1.3102 14 6 -0.7253 -5.9736 -1.3109 15 6 0.0362 -7.2949 -1.1866 16 1 0.7200 -7.4007 -2.0287 17 6 -0.9576 -8.4582 -1.1879 18 7 -1.6340 -8.5212 -2.4859 19 6 -2.5590 -9.4735 -2.7182 20 8 -2.8318 -10.2779 -1.8526 21 6 -3.2544 -9.5387 -4.0536 22 1 -3.4416 -8.5781 -4.5335 23 6 -2.9358 -10.7304 -4.9586 24 6 -4.2930 -10.6438 -4.2561 25 1 -4.4729 -11.3240 -3.4236 26 6 -5.4966 -10.3208 -5.1033 27 8 -5.6133 -9.2226 -5.5935 28 8 -6.4387 -11.2534 -5.3144 29 6 0.8314 -7.3043 0.1204 30 6 1.8247 -6.1412 0.1214 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 2.6847 -3.7152 0.8872 34 1 2.6847 -3.7137 -0.8927 35 1 -0.2735 -3.8688 -1.3990 36 1 0.9524 -4.9166 -2.1524 37 1 -1.2921 -5.9667 -2.2419 38 1 -1.4091 -5.8678 -0.4688 39 1 -1.6958 -8.3063 -0.4005 40 1 -0.4241 -9.3920 -1.0105 41 1 -1.4161 -7.8776 -3.1781 42 1 -2.9132 -10.5539 -6.0340 43 1 -2.2235 -11.4675 -4.5880 44 1 -7.1921 -10.9997 -5.8648 45 1 0.1475 -7.1984 0.9626 46 1 1.3742 -8.2454 0.2087 47 1 2.3912 -6.1479 1.0525 48 1 2.5085 -6.2475 -0.7208 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:41 Heat of formation + Delta-G solvation = -120.839504 kcal Electronic energy + Delta-G solvation = -26737.656095 eV Core-core repulsion = 22792.302940 eV Total energy + Delta-G solvation = -3945.353155 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.12568 -40.07996 -38.89485 -37.09726 -36.21956 -35.53296 -34.15376 -32.07333 -30.62620 -30.05619 -27.39328 -26.07587 -24.69532 -23.55869 -22.82484 -21.94815 -21.31259 -20.60528 -20.08256 -19.55670 -18.85784 -17.87693 -17.08296 -16.82928 -16.25279 -16.04707 -15.68132 -14.99038 -14.82213 -14.59029 -14.32424 -14.11009 -13.93236 -13.68580 -13.24007 -13.05332 -12.97669 -12.91490 -12.72995 -12.20617 -12.09382 -12.00805 -11.57641 -11.47243 -11.38084 -11.22695 -11.05737 -10.97275 -10.89263 -10.81476 -10.73824 -10.25033 -10.17603 -10.10132 -9.94232 -9.74732 -9.53122 -9.33357 -8.84188 -6.87907 -5.74268 -3.02075 1.52297 2.06342 2.32297 2.94042 3.23733 3.44537 3.49594 3.51416 3.94802 4.13478 4.33683 4.54079 4.61411 4.64981 4.70485 4.77634 4.78704 5.01060 5.17273 5.30175 5.32384 5.34897 5.36792 5.48664 5.56543 5.61402 5.63600 5.67393 5.72503 5.75415 5.98400 6.03380 6.11043 6.13134 6.22655 6.28675 6.30803 6.35916 6.44429 6.58253 6.75630 6.89855 7.00030 7.16476 7.39808 7.72205 7.86743 8.45282 9.56164 10.15817 10.50334 11.48775 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017397 B = 0.001940 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.112084 B =14430.009949 C =15687.236364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.156 3.844 11 C -0.094 4.094 12 H 0.069 0.931 13 C -0.109 4.109 14 C -0.114 4.114 15 C -0.098 4.098 16 H 0.076 0.924 17 C 0.123 3.877 18 N -0.718 5.718 19 C 0.543 3.457 20 O -0.539 6.539 21 C -0.157 4.157 22 H 0.141 0.859 23 C -0.114 4.114 24 C -0.139 4.139 25 H 0.151 0.849 26 C 0.512 3.488 27 O -0.511 6.511 28 O -0.509 6.509 29 C -0.108 4.108 30 C -0.109 4.109 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.016 0.984 34 H 0.017 0.983 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.405 0.595 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.414 0.586 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.604 -25.974 -10.018 28.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.029 3.971 11 C -0.113 4.113 12 H 0.087 0.913 13 C -0.147 4.147 14 C -0.152 4.152 15 C -0.117 4.117 16 H 0.095 0.905 17 C 0.000 4.000 18 N -0.369 5.369 19 C 0.328 3.672 20 O -0.417 6.417 21 C -0.179 4.179 22 H 0.159 0.841 23 C -0.152 4.152 24 C -0.158 4.158 25 H 0.168 0.832 26 C 0.354 3.646 27 O -0.399 6.399 28 O -0.321 6.321 29 C -0.146 4.146 30 C -0.148 4.148 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.240 0.760 42 H 0.133 0.867 43 H 0.137 0.863 44 H 0.273 0.727 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.348 -26.228 -9.252 28.527 hybrid contribution -0.352 1.588 -0.679 1.763 sum -6.700 -24.640 -9.931 27.398 Atomic orbital electron populations 1.69657 1.05081 1.25566 1.58035 1.24733 0.95530 0.97659 1.03252 0.86195 0.78641 0.83921 0.77477 1.21782 1.21810 1.20814 1.19245 0.91024 0.84301 1.42297 0.91286 1.42389 1.05850 1.00002 1.89381 1.20690 0.93295 0.85591 0.97532 1.21323 0.97660 0.94291 0.97997 0.91298 1.21519 0.97583 0.98119 0.97442 1.21639 0.98048 0.93884 1.01610 1.21439 0.96550 0.94098 0.99592 0.90535 1.21528 0.95171 0.98871 0.84442 1.45929 1.40812 1.32888 1.17309 1.19392 0.79320 0.80856 0.87600 1.90723 1.64131 1.40629 1.46196 1.22353 1.01193 0.97277 0.97042 0.84091 1.23128 0.94705 0.98274 0.99081 1.21613 0.87209 1.04392 1.02578 0.83175 1.22183 0.82859 0.81651 0.77918 1.90758 1.77233 1.23737 1.48219 1.84492 1.34221 1.45279 1.68130 1.21465 0.98048 0.98620 0.96475 1.21492 0.97474 0.93948 1.01841 0.93572 0.78259 0.96592 0.96540 0.90713 0.92396 0.92493 0.91787 0.91185 0.91407 0.76023 0.86725 0.86330 0.72665 0.91662 0.92069 0.91889 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.57 5.33 -59.91 -0.32 -18.89 16 10 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 11 C -0.09 -1.46 2.23 -90.62 -0.20 -1.66 16 12 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 13 C -0.11 -1.59 5.08 -26.73 -0.14 -1.73 16 14 C -0.11 -1.29 5.08 -26.73 -0.14 -1.43 16 15 C -0.10 -0.92 2.22 -90.62 -0.20 -1.12 16 16 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 17 C 0.12 1.14 5.07 -4.04 -0.02 1.12 16 18 N -0.72 -6.08 5.28 -60.30 -0.32 -6.40 16 19 C 0.54 5.34 7.61 -10.99 -0.08 5.26 16 20 O -0.54 -7.18 16.26 5.56 0.09 -7.09 16 21 C -0.16 -1.19 5.70 -91.77 -0.52 -1.71 16 22 H 0.14 1.02 7.67 -51.93 -0.40 0.62 16 23 C -0.11 -0.62 9.94 -26.69 -0.27 -0.88 16 24 C -0.14 -1.03 5.81 -91.74 -0.53 -1.56 16 25 H 0.15 1.17 7.67 -51.92 -0.40 0.77 16 26 C 0.51 4.15 8.11 36.00 0.29 4.45 16 27 O -0.51 -5.62 17.02 -18.75 -0.32 -5.94 16 28 O -0.51 -2.96 13.42 -39.26 -0.53 -3.49 16 29 C -0.11 -1.08 5.20 -26.76 -0.14 -1.22 16 30 C -0.11 -1.33 5.20 -26.76 -0.14 -1.46 16 31 H 0.25 7.49 8.31 -40.82 -0.34 7.16 16 32 H 0.38 10.17 6.85 -40.82 -0.28 9.89 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 1.32 7.18 -51.93 -0.37 0.95 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.58 7.18 -51.93 -0.37 0.21 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.40 2.67 7.66 -40.82 -0.31 2.35 16 42 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.41 0.65 9.10 45.56 0.41 1.07 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 393.07 15.07 5.92 5.92 Total: -1.00 -35.40 393.07 -9.31 -44.71 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.18 Total: 7.59 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -2.36 Total: -6.26 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.09 Total: -53.01 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.76 Total: -16.52 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.40 -9.31 -44.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.134 kcal (2) G-P(sol) polarization free energy of solvation -35.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds