Wall clock time and date at job start Tue Mar 31 2020 13:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00041 * 2 1 4 4 H 1.48507 * 109.47376 * 270.00210 * 3 2 1 5 5 H 1.48501 * 109.47117 * 30.00092 * 3 2 1 6 6 H 1.48503 * 109.47362 * 150.00021 * 3 2 1 7 7 C 1.38810 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99914 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99780 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46878 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47059 * 305.00173 * 11 10 9 13 13 C 1.53004 * 109.46990 * 65.00329 * 11 10 9 14 14 C 1.53004 * 109.46990 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.46860 * 299.99968 * 14 13 11 16 16 H 1.08998 * 109.47183 * 299.99800 * 15 14 13 17 17 C 1.52998 * 109.47111 * 180.02562 * 15 14 13 18 18 N 1.46502 * 109.47209 * 64.99455 * 17 15 14 19 19 C 1.34778 * 120.00212 * 180.02562 * 18 17 15 20 20 O 1.21280 * 119.99636 * 0.02562 * 19 18 17 21 21 C 1.50697 * 120.00145 * 180.02562 * 19 18 17 22 22 H 1.09002 * 115.54932 * 325.58291 * 21 19 18 23 23 C 1.53002 * 117.49992 * 111.25454 * 21 19 18 24 24 C 1.53000 * 117.50034 * 179.91227 * 21 19 18 25 25 H 1.09008 * 117.49673 * 359.97438 * 24 21 19 26 26 C 1.50692 * 117.50104 * 144.97111 * 24 21 19 27 27 O 1.20830 * 120.00022 * 0.02562 * 26 24 21 28 28 O 1.34231 * 120.00483 * 179.97438 * 26 24 21 29 29 C 1.52996 * 109.47636 * 59.99936 * 15 14 13 30 30 C 1.52998 * 109.47099 * 184.99996 * 11 10 9 31 31 H 0.97007 * 120.00078 * 0.02562 * 1 2 3 32 32 H 0.96996 * 120.00285 * 359.97438 * 9 7 2 33 33 H 1.08994 * 109.46733 * 60.00244 * 10 9 7 34 34 H 1.08994 * 109.47084 * 299.99989 * 10 9 7 35 35 H 1.09004 * 109.47025 * 299.99773 * 13 11 10 36 36 H 1.08999 * 109.47587 * 59.99531 * 13 11 10 37 37 H 1.09001 * 109.46836 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.47059 * 59.99844 * 14 13 11 39 39 H 1.08997 * 109.47080 * 304.99960 * 17 15 14 40 40 H 1.08997 * 109.47589 * 184.99976 * 17 15 14 41 41 H 0.97004 * 119.99847 * 0.02562 * 18 17 15 42 42 H 1.09000 * 117.49996 * 215.00670 * 23 21 19 43 43 H 1.08999 * 117.49664 * 0.02562 * 23 21 19 44 44 H 0.96696 * 117.00687 * 180.02562 * 28 26 24 45 45 H 1.09007 * 109.46740 * 59.99741 * 29 15 14 46 46 H 1.08996 * 109.47262 * 180.02562 * 29 15 14 47 47 H 1.08996 * 109.47121 * 59.99877 * 30 11 10 48 48 H 1.08999 * 109.46790 * 300.00047 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0638 -4.8197 -0.0031 12 1 0.3800 -4.7134 0.8390 13 6 0.2686 -4.8103 -1.3102 14 6 -0.7253 -5.9736 -1.3109 15 6 0.0362 -7.2949 -1.1866 16 1 0.7200 -7.4007 -2.0287 17 6 -0.9576 -8.4582 -1.1879 18 7 -1.6340 -8.5212 -2.4859 19 6 -2.5590 -9.4735 -2.7182 20 8 -2.8318 -10.2779 -1.8526 21 6 -3.2544 -9.5387 -4.0536 22 1 -3.4416 -8.5781 -4.5335 23 6 -2.9358 -10.7304 -4.9586 24 6 -4.2930 -10.6438 -4.2561 25 1 -4.4729 -11.3240 -3.4236 26 6 -5.4966 -10.3208 -5.1033 27 8 -5.6133 -9.2226 -5.5935 28 8 -6.4387 -11.2534 -5.3144 29 6 0.8314 -7.3043 0.1204 30 6 1.8247 -6.1412 0.1214 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 2.6847 -3.7152 0.8872 34 1 2.6847 -3.7137 -0.8927 35 1 -0.2735 -3.8688 -1.3990 36 1 0.9524 -4.9166 -2.1524 37 1 -1.2921 -5.9667 -2.2419 38 1 -1.4091 -5.8678 -0.4688 39 1 -1.6958 -8.3063 -0.4005 40 1 -0.4241 -9.3920 -1.0105 41 1 -1.4161 -7.8776 -3.1781 42 1 -2.9132 -10.5539 -6.0340 43 1 -2.2235 -11.4675 -4.5880 44 1 -7.1921 -10.9997 -5.8648 45 1 0.1475 -7.1984 0.9626 46 1 1.3742 -8.2454 0.2087 47 1 2.3912 -6.1479 1.0525 48 1 2.5085 -6.2475 -0.7208 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:41 Heat of formation + Delta-G solvation = -145.232071 kcal Electronic energy + Delta-G solvation = -26738.713837 eV Core-core repulsion = 22792.302940 eV Total energy + Delta-G solvation = -3946.410896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.75591 -40.82762 -39.89512 -37.70577 -37.01823 -36.64230 -35.56375 -33.63557 -31.71278 -31.57969 -28.49879 -26.97001 -25.90006 -24.69623 -24.00000 -23.11754 -21.94249 -21.57373 -21.01739 -20.55587 -19.46669 -19.14203 -18.48590 -17.46827 -17.00393 -16.71143 -16.63670 -16.51743 -16.02735 -15.62823 -15.32038 -15.21684 -15.07519 -14.82226 -14.57735 -14.52114 -13.94181 -13.68397 -13.46554 -13.33596 -13.10341 -12.99774 -12.85605 -12.66814 -12.58101 -12.45348 -12.10455 -11.95901 -11.93402 -11.86897 -11.82052 -11.74568 -11.69438 -11.30275 -11.12300 -10.96115 -10.86551 -10.78385 -10.09848 -8.98207 -7.95404 -5.23602 0.92799 1.38658 1.46064 1.48047 1.56567 1.76683 2.31816 2.55749 2.66616 3.37815 3.39054 3.61789 3.65688 3.77552 3.79593 3.86252 4.00174 4.09840 4.23296 4.29116 4.35255 4.43732 4.56932 4.60028 4.61934 4.64202 4.68275 4.79554 4.80942 4.87185 4.91926 4.96292 5.06808 5.11623 5.22916 5.25938 5.31723 5.35607 5.39980 5.46464 5.50576 5.52636 5.61785 5.68924 6.27396 6.48721 6.92503 7.16109 7.33273 8.11608 8.34437 9.28263 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.017397 B = 0.001940 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.112084 B =14430.009949 C =15687.236364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.245 4.245 8 H 0.074 0.926 9 N -0.744 5.744 10 C 0.153 3.847 11 C -0.086 4.086 12 H 0.052 0.948 13 C -0.103 4.103 14 C -0.108 4.108 15 C -0.085 4.085 16 H 0.093 0.907 17 C 0.129 3.871 18 N -0.711 5.711 19 C 0.542 3.458 20 O -0.578 6.578 21 C -0.165 4.165 22 H 0.145 0.855 23 C -0.088 4.088 24 C -0.151 4.151 25 H 0.145 0.855 26 C 0.518 3.482 27 O -0.545 6.545 28 O -0.506 6.506 29 C -0.105 4.105 30 C -0.102 4.102 31 H 0.251 0.749 32 H 0.373 0.627 33 H 0.014 0.986 34 H 0.019 0.981 35 H 0.035 0.965 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.415 0.585 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.432 0.568 45 H 0.060 0.940 46 H 0.085 0.915 47 H 0.065 0.935 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 -27.609 -11.101 30.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.027 3.973 11 C -0.105 4.105 12 H 0.071 0.929 13 C -0.141 4.141 14 C -0.145 4.145 15 C -0.104 4.104 16 H 0.111 0.889 17 C 0.005 3.995 18 N -0.362 5.362 19 C 0.329 3.671 20 O -0.459 6.459 21 C -0.186 4.186 22 H 0.162 0.838 23 C -0.125 4.125 24 C -0.170 4.170 25 H 0.162 0.838 26 C 0.362 3.638 27 O -0.436 6.436 28 O -0.319 6.319 29 C -0.143 4.143 30 C -0.140 4.140 31 H 0.060 0.940 32 H 0.206 0.794 33 H 0.032 0.968 34 H 0.037 0.963 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.252 0.748 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.294 0.706 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.130 -27.891 -10.354 30.190 hybrid contribution -0.728 2.043 -0.336 2.195 sum -5.858 -25.848 -10.690 28.578 Atomic orbital electron populations 1.69821 1.06621 1.26027 1.59664 1.25587 0.96440 1.01167 1.03859 0.85124 0.77675 0.79396 0.77478 1.21298 1.22204 1.19445 1.19665 0.91494 0.85568 1.41006 0.90790 1.42616 1.05624 1.01230 1.89246 1.20901 0.94087 0.85158 0.97193 1.21241 0.96765 0.94566 0.97912 0.92903 1.21417 0.97913 0.97692 0.97097 1.21565 0.97306 0.93715 1.01927 1.21319 0.96412 0.92624 1.00004 0.88901 1.21405 0.94745 0.98887 0.84425 1.45883 1.40269 1.32707 1.17310 1.19735 0.79095 0.80313 0.87945 1.90705 1.65425 1.42201 1.47548 1.22286 1.01737 0.98122 0.96415 0.83758 1.23281 0.93006 0.96628 0.99631 1.21643 0.87925 1.04438 1.03010 0.83763 1.22264 0.83081 0.81224 0.77254 1.90746 1.78041 1.25028 1.49819 1.84459 1.34603 1.44597 1.68288 1.21448 0.97666 0.98623 0.96540 1.21435 0.97706 0.92390 1.02485 0.94044 0.79434 0.96794 0.96277 0.94621 0.91780 0.91114 0.92940 0.92634 0.90806 0.74767 0.84954 0.85217 0.70574 0.92169 0.89660 0.91611 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.40 13.06 21.65 0.28 -60.12 16 2 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 3 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 8 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -38.61 5.33 -343.45 -1.83 -40.44 16 10 C 0.15 6.15 5.65 86.38 0.49 6.63 16 11 C -0.09 -2.65 2.23 -10.79 -0.02 -2.68 16 12 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 13 C -0.10 -3.02 5.08 30.60 0.16 -2.86 16 14 C -0.11 -2.33 5.08 30.59 0.16 -2.17 16 15 C -0.08 -1.39 2.22 -10.80 -0.02 -1.41 16 16 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 17 C 0.13 2.14 5.07 86.38 0.44 2.58 16 18 N -0.71 -10.78 5.28 -463.07 -2.45 -13.22 16 19 C 0.54 10.06 7.61 87.66 0.67 10.72 16 20 O -0.58 -15.09 16.26 -3.03 -0.05 -15.13 16 21 C -0.16 -2.26 5.70 -11.54 -0.07 -2.33 16 22 H 0.14 1.91 7.67 -2.39 -0.02 1.89 16 23 C -0.09 -0.76 9.94 30.62 0.30 -0.45 16 24 C -0.15 -2.07 5.81 -11.52 -0.07 -2.14 16 25 H 0.14 2.18 7.67 -2.38 -0.02 2.16 16 26 C 0.52 7.93 8.11 71.23 0.58 8.50 16 27 O -0.55 -11.66 17.02 21.95 0.37 -11.28 16 28 O -0.51 -5.23 13.42 -51.42 -0.69 -5.92 16 29 C -0.10 -1.83 5.20 30.57 0.16 -1.67 16 30 C -0.10 -2.27 5.20 30.58 0.16 -2.11 16 31 H 0.25 15.10 8.31 -92.70 -0.77 14.33 16 32 H 0.37 20.60 6.85 -92.71 -0.63 19.97 16 33 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.03 1.31 7.18 -2.38 -0.02 1.29 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.34 7.18 -2.39 -0.02 1.32 16 38 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.42 4.54 7.66 -92.71 -0.71 3.83 16 42 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.43 0.77 9.10 -74.06 -0.67 0.10 16 45 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 46 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -77.45 393.07 0.86 -76.58 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: -1.03 Total: 27.43 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 4.23 Total: -6.68 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -3.99 Total: -113.79 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.37 Total: -32.34 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -77.45 0.86 -76.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.648 kcal (2) G-P(sol) polarization free energy of solvation -77.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds