Wall clock time and date at job start Tue Mar 31 2020 13:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 120.00130 * 2 1 4 4 H 1.48504 * 109.46754 * 239.99928 * 3 2 1 5 5 H 1.48497 * 109.47534 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47147 * 120.00155 * 3 2 1 7 7 C 1.38814 * 119.99372 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99861 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99880 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47098 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47295 * 305.00414 * 11 10 9 13 13 C 1.53002 * 109.46986 * 65.00337 * 11 10 9 14 14 C 1.52998 * 109.47217 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47077 * 300.00040 * 14 13 11 16 16 H 1.08997 * 109.47272 * 299.99910 * 15 14 13 17 17 C 1.53003 * 109.47009 * 179.97438 * 15 14 13 18 18 N 1.46502 * 109.46950 * 65.00421 * 17 15 14 19 19 C 1.34775 * 120.00324 * 180.02562 * 18 17 15 20 20 O 1.21286 * 119.99711 * 359.97438 * 19 18 17 21 21 C 1.50697 * 120.00215 * 179.97438 * 19 18 17 22 22 H 1.09002 * 115.54932 * 34.41541 * 21 19 18 23 23 C 1.53000 * 117.50034 * 248.74477 * 21 19 18 24 24 C 1.53002 * 117.49992 * 180.08704 * 21 19 18 25 25 H 1.08999 * 117.49664 * 0.02562 * 24 21 19 26 26 C 1.50695 * 117.50044 * 215.00770 * 24 21 19 27 27 O 1.20833 * 119.99999 * 359.97438 * 26 24 21 28 28 O 1.34229 * 120.00134 * 180.02562 * 26 24 21 29 29 C 1.53002 * 109.47129 * 59.99906 * 15 14 13 30 30 C 1.52995 * 109.47009 * 185.00194 * 11 10 9 31 31 H 0.96998 * 119.99535 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00158 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.47067 * 60.00241 * 10 9 7 34 34 H 1.08996 * 109.47489 * 300.00463 * 10 9 7 35 35 H 1.08997 * 109.46817 * 300.00197 * 13 11 10 36 36 H 1.09006 * 109.47089 * 59.99731 * 13 11 10 37 37 H 1.08999 * 109.46944 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.46996 * 60.00119 * 14 13 11 39 39 H 1.08994 * 109.47298 * 305.00540 * 17 15 14 40 40 H 1.09000 * 109.47221 * 184.99976 * 17 15 14 41 41 H 0.97007 * 119.99935 * 359.97438 * 18 17 15 42 42 H 1.09008 * 117.49673 * 359.97438 * 23 21 19 43 43 H 1.08999 * 117.49942 * 144.97208 * 23 21 19 44 44 H 0.96703 * 117.00042 * 179.97438 * 28 26 24 45 45 H 1.09006 * 109.47089 * 60.00051 * 29 15 14 46 46 H 1.08997 * 109.46817 * 179.97438 * 29 15 14 47 47 H 1.08999 * 109.47270 * 60.00480 * 30 11 10 48 48 H 1.09000 * 109.47739 * 300.00070 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2126 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.3797 -4.7126 0.8432 13 6 0.2684 -4.8115 -1.3059 14 6 -0.7255 -5.9747 -1.3056 15 6 0.0358 -7.2959 -1.1801 16 1 0.7196 -7.4026 -2.0221 17 6 -0.9582 -8.4591 -1.1792 18 7 -1.6354 -8.5238 -2.4767 19 6 -2.5608 -9.4761 -2.7072 20 8 -2.8326 -10.2799 -1.8405 21 6 -3.2578 -9.5423 -4.0416 22 1 -2.6518 -9.2610 -4.9029 23 6 -4.7461 -9.1898 -4.0795 24 6 -4.2996 -10.6450 -4.2406 25 1 -4.4811 -11.3224 -3.4062 26 6 -4.4094 -11.2592 -5.6123 27 8 -3.6901 -10.8769 -6.5048 28 8 -5.3069 -12.2303 -5.8430 29 6 0.8310 -7.3041 0.1270 30 6 1.8244 -6.1411 0.1270 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.6845 -3.7146 0.8905 34 1 2.6846 -3.7146 -0.8893 35 1 -0.2736 -3.8700 -1.3955 36 1 0.9523 -4.9186 -2.1480 37 1 -1.2923 -5.9685 -2.2366 38 1 -1.4094 -5.8680 -0.4636 39 1 -1.6959 -8.3060 -0.3916 40 1 -0.4247 -9.3927 -1.0009 41 1 -1.4183 -7.8806 -3.1697 42 1 -5.2213 -8.9105 -3.1391 43 1 -5.1193 -8.6762 -4.9656 44 1 -5.3405 -12.5933 -6.7387 45 1 0.1470 -7.1975 0.9691 46 1 1.3729 -8.2456 0.2166 47 1 2.3909 -6.1471 1.0582 48 1 2.5082 -6.2484 -0.7150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074547.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:46 Heat of formation + Delta-G solvation = -120.927305 kcal Electronic energy + Delta-G solvation = -26728.784875 eV Core-core repulsion = 22783.427912 eV Total energy + Delta-G solvation = -3945.356963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13266 -40.08417 -38.89658 -37.10152 -36.22708 -35.53300 -34.15497 -32.07494 -30.62982 -30.05828 -27.39445 -26.07724 -24.69010 -23.55845 -22.82853 -21.94130 -21.31890 -20.61039 -20.08181 -19.55181 -18.87231 -17.88878 -17.08754 -16.82200 -16.25655 -16.06154 -15.69110 -14.97388 -14.77106 -14.57123 -14.44189 -14.08610 -13.91985 -13.69860 -13.21159 -13.05757 -13.01506 -12.88568 -12.72692 -12.20772 -12.10975 -12.01104 -11.58800 -11.46867 -11.35942 -11.22608 -11.06899 -10.97636 -10.88580 -10.82376 -10.73216 -10.25500 -10.19473 -10.10924 -9.94502 -9.75456 -9.53221 -9.33317 -8.84039 -6.88316 -5.74642 -3.02379 1.51196 2.06482 2.31213 2.93890 3.25078 3.44874 3.49119 3.50215 3.95786 4.14671 4.34251 4.54573 4.61093 4.63570 4.71088 4.76869 4.78388 5.04937 5.17159 5.31543 5.32309 5.35887 5.36643 5.48714 5.56113 5.61060 5.63369 5.67128 5.72129 5.75278 5.96464 6.03221 6.10855 6.13033 6.22320 6.28189 6.30665 6.35687 6.44001 6.57981 6.75097 6.89443 6.99794 7.16542 7.38136 7.71416 7.86834 8.45053 9.55816 10.15399 10.50015 11.48359 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.019759 B = 0.001878 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.705229 B =14902.025815 C =15833.427351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.156 3.844 11 C -0.094 4.094 12 H 0.069 0.931 13 C -0.109 4.109 14 C -0.113 4.113 15 C -0.098 4.098 16 H 0.076 0.924 17 C 0.123 3.877 18 N -0.718 5.718 19 C 0.543 3.457 20 O -0.540 6.540 21 C -0.158 4.158 22 H 0.141 0.859 23 C -0.113 4.113 24 C -0.139 4.139 25 H 0.151 0.849 26 C 0.512 3.488 27 O -0.513 6.513 28 O -0.509 6.509 29 C -0.108 4.108 30 C -0.110 4.110 31 H 0.255 0.745 32 H 0.383 0.617 33 H 0.016 0.984 34 H 0.017 0.983 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.405 0.595 42 H 0.120 0.880 43 H 0.115 0.885 44 H 0.414 0.586 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.632 -24.258 -9.049 27.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.029 3.971 11 C -0.112 4.112 12 H 0.087 0.913 13 C -0.147 4.147 14 C -0.151 4.151 15 C -0.117 4.117 16 H 0.095 0.905 17 C 0.000 4.000 18 N -0.369 5.369 19 C 0.328 3.672 20 O -0.417 6.417 21 C -0.179 4.179 22 H 0.158 0.842 23 C -0.151 4.151 24 C -0.159 4.159 25 H 0.168 0.832 26 C 0.355 3.645 27 O -0.401 6.401 28 O -0.321 6.321 29 C -0.146 4.146 30 C -0.148 4.148 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.240 0.760 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.273 0.727 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.466 -24.438 -8.251 27.147 hybrid contribution 0.347 1.003 -0.995 1.455 sum -8.119 -23.434 -9.246 26.468 Atomic orbital electron populations 1.69651 1.05072 1.25671 1.57991 1.24731 0.95531 0.97640 1.03226 0.86267 0.78507 0.83603 0.77818 1.21341 1.21718 1.21319 1.19205 0.90999 0.84319 1.42406 0.91345 1.42376 1.05834 0.99987 1.89396 1.20691 0.93302 0.85589 0.97539 1.21320 0.97657 0.94286 0.97986 0.91298 1.21520 0.97599 0.98108 0.97457 1.21631 0.98038 0.93868 1.01567 1.21445 0.96574 0.94100 0.99608 0.90535 1.21529 0.95148 0.98893 0.84432 1.45929 1.40783 1.32830 1.17399 1.19396 0.79385 0.80816 0.87577 1.90725 1.64301 1.40432 1.46233 1.22340 0.93721 1.03118 0.98688 0.84174 1.23145 0.93599 0.92811 1.05531 1.21620 1.05984 0.93823 0.94461 0.83177 1.22196 0.76278 0.76511 0.89530 1.90748 1.42485 1.60686 1.46227 1.84501 1.56820 1.50893 1.39851 1.21466 0.98058 0.98630 0.96457 1.21494 0.97484 0.93946 1.01850 0.93535 0.78263 0.96598 0.96538 0.90708 0.92400 0.92490 0.91794 0.91166 0.91425 0.76024 0.86211 0.86662 0.72698 0.91664 0.92075 0.91888 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.70 9.99 -15.06 -0.15 -6.86 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.46 5.33 -59.91 -0.32 -18.78 16 10 C 0.16 3.12 5.65 -4.04 -0.02 3.10 16 11 C -0.09 -1.44 2.23 -90.62 -0.20 -1.65 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.11 -1.58 5.08 -26.73 -0.14 -1.71 16 14 C -0.11 -1.25 5.08 -26.73 -0.14 -1.39 16 15 C -0.10 -0.92 2.23 -90.62 -0.20 -1.12 16 16 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 17 C 0.12 1.14 5.06 -4.04 -0.02 1.12 16 18 N -0.72 -6.08 5.28 -60.29 -0.32 -6.40 16 19 C 0.54 5.34 7.61 -10.99 -0.08 5.26 16 20 O -0.54 -7.18 16.26 5.55 0.09 -7.09 16 21 C -0.16 -1.19 5.70 -91.77 -0.52 -1.71 16 22 H 0.14 0.97 7.67 -51.93 -0.40 0.57 16 23 C -0.11 -0.67 9.94 -26.70 -0.27 -0.93 16 24 C -0.14 -1.03 5.82 -91.74 -0.53 -1.57 16 25 H 0.15 1.17 7.67 -51.93 -0.40 0.77 16 26 C 0.51 4.06 8.11 36.00 0.29 4.35 16 27 O -0.51 -5.45 17.02 -18.76 -0.32 -5.77 16 28 O -0.51 -2.87 13.42 -39.26 -0.53 -3.40 16 29 C -0.11 -1.08 5.20 -26.76 -0.14 -1.22 16 30 C -0.11 -1.33 5.20 -26.76 -0.14 -1.47 16 31 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.38 10.09 6.85 -40.82 -0.28 9.81 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 1.31 7.18 -51.93 -0.37 0.93 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.56 7.18 -51.93 -0.37 0.18 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.40 2.67 7.65 -40.82 -0.31 2.36 16 42 H 0.12 0.65 8.14 -51.92 -0.42 0.23 16 43 H 0.12 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.41 0.55 9.10 45.56 0.41 0.97 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 393.07 15.07 5.92 5.92 Total: -1.00 -35.08 393.07 -9.31 -44.39 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.18 Total: 7.54 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.36 Total: -6.34 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: 0.09 Total: -52.72 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.76 Total: -16.26 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.08 -9.31 -44.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074547.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.537 kcal (2) G-P(sol) polarization free energy of solvation -35.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds